Wall clock time and date at job start Tue Mar 31 2020 06:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.58904 * 2 1 4 4 C 1.53161 * 109.70646 * 120.36496 * 2 1 3 5 5 C 1.53041 * 109.33100 * 65.21221 * 4 2 1 6 6 H 1.09000 * 109.45702 * 301.35656 * 5 4 2 7 7 N 1.46500 * 109.46241 * 181.38628 * 5 4 2 8 8 C 1.34770 * 120.00157 * 154.97029 * 7 5 4 9 9 O 1.21289 * 119.99936 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00298 * 180.02562 * 8 7 5 11 11 H 1.08996 * 115.51103 * 34.62717 * 10 8 7 12 12 C 1.53000 * 117.43635 * 180.02562 * 10 8 7 13 13 H 1.08998 * 119.80690 * 354.34045 * 12 10 8 14 14 C 1.54483 * 118.06587 * 198.08770 * 12 10 8 15 15 O 1.44422 * 104.80098 * 321.12364 * 14 12 10 16 16 C 1.44426 * 105.27852 * 319.48810 * 15 14 12 17 17 C 1.53000 * 117.43331 * 249.34783 * 10 8 7 18 18 H 1.09002 * 119.80715 * 4.63441 * 17 10 8 19 19 C 1.53038 * 109.52868 * 61.36830 * 5 4 2 20 20 C 1.53189 * 109.31344 * 298.64645 * 19 5 4 21 21 N 1.46926 * 109.58492 * 239.71818 * 2 1 3 22 22 C 1.36934 * 120.63389 * 113.65934 * 21 2 1 23 23 H 1.07998 * 119.99697 * 27.92211 * 22 21 2 24 24 C 1.38805 * 120.00127 * 207.92743 * 22 21 2 25 25 N 1.31616 * 120.00369 * 17.07028 * 24 22 21 26 26 Si 1.86807 * 119.99901 * 197.07538 * 24 22 21 27 27 H 1.48499 * 109.47121 * 94.75058 * 26 24 22 28 28 H 1.48497 * 109.46941 * 214.75134 * 26 24 22 29 29 H 1.48501 * 109.47134 * 334.74900 * 26 24 22 30 30 H 1.09002 * 109.46981 * 180.28440 * 1 2 3 31 31 H 1.09001 * 109.47291 * 300.28216 * 1 2 3 32 32 H 1.09002 * 109.47464 * 60.28304 * 1 2 3 33 33 H 1.08994 * 109.47954 * 305.26158 * 4 2 1 34 34 H 1.09007 * 109.50083 * 185.17177 * 4 2 1 35 35 H 0.96999 * 119.99610 * 334.96874 * 7 5 4 36 36 H 1.08993 * 110.37651 * 79.95473 * 14 12 10 37 37 H 1.09003 * 110.36923 * 202.29354 * 14 12 10 38 38 H 1.08994 * 110.37467 * 159.34186 * 16 15 14 39 39 H 1.08997 * 110.37909 * 281.57401 * 16 15 14 40 40 H 1.08997 * 109.49598 * 58.59690 * 19 5 4 41 41 H 1.09003 * 109.49971 * 178.69283 * 19 5 4 42 42 H 1.09002 * 109.58953 * 174.41879 * 20 19 5 43 43 H 1.09004 * 109.58437 * 294.84367 * 20 19 5 44 44 H 0.97004 * 119.99998 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 1.2441 5 6 1.6473 -2.2044 1.1690 6 1 0.5624 -2.2840 1.0995 7 7 2.1112 -2.8975 2.3734 8 6 1.4864 -4.0167 2.7897 9 8 0.5403 -4.4505 2.1669 10 6 1.9633 -4.7294 4.0290 11 1 2.3465 -4.0870 4.8218 12 6 1.2117 -5.9945 4.4479 13 1 0.3121 -6.2935 3.9099 14 6 1.3846 -6.4957 5.8989 15 8 2.7790 -6.2735 6.2023 16 6 3.4931 -6.6433 5.0027 17 6 2.6302 -6.0940 3.8448 18 1 2.8116 -6.4773 2.8407 19 6 2.2857 -2.8449 -0.0656 20 6 1.7719 -2.1400 -1.3249 21 7 2.0225 -0.6980 -1.1954 22 6 2.7019 -0.0176 -2.1704 23 1 3.2685 0.8662 -1.9171 24 6 2.6621 -0.4638 -3.4842 25 7 1.7309 -1.3133 -3.8628 26 14 3.9303 0.1415 -4.7149 27 1 5.0524 -0.8285 -4.7871 28 1 3.2997 0.2694 -6.0532 29 1 4.4471 1.4650 -4.2828 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5094 -0.8925 33 1 1.6105 -0.2791 2.1361 34 1 3.1326 -0.6477 1.2888 35 1 2.8681 -2.5508 2.8713 36 1 0.7527 -5.9217 6.5765 37 1 1.1465 -7.5574 5.9645 38 1 4.4809 -6.1827 4.9918 39 1 3.5801 -7.7275 4.9317 40 1 3.3694 -2.7438 -0.0086 41 1 2.0200 -3.9013 -0.1060 42 1 2.2969 -2.5250 -2.1992 43 1 0.7016 -2.3167 -1.4317 44 1 1.7029 -1.6248 -4.7811 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947635584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:44 Heat of formation + Delta-G solvation = -30.961013 kcal Electronic energy + Delta-G solvation = -24288.467486 eV Core-core repulsion = 20821.231565 eV Total energy + Delta-G solvation = -3467.235920 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94600 -39.31797 -37.68444 -34.68029 -34.36173 -32.51955 -30.83181 -29.61884 -29.03769 -27.16628 -26.42707 -24.33472 -22.74874 -21.89295 -21.13681 -20.90466 -19.93017 -18.49546 -17.67671 -16.76065 -16.26240 -16.00454 -15.61568 -15.43312 -14.72845 -14.55706 -14.06701 -13.84108 -13.73373 -13.24459 -13.07457 -12.90847 -12.65282 -12.49029 -12.22490 -12.01712 -11.86733 -11.41554 -11.07666 -10.93558 -10.81869 -10.66082 -10.54654 -10.48567 -10.35302 -10.17924 -10.06892 -9.97974 -9.72612 -9.70773 -9.33633 -8.72467 -8.41525 -6.69618 -5.78817 -3.21739 2.44691 3.07489 3.37331 3.43632 3.44493 3.45776 3.69357 4.35763 4.37202 4.48173 4.53595 4.57958 4.98388 5.06957 5.10623 5.26702 5.31172 5.35487 5.38221 5.39855 5.43131 5.59884 5.63676 5.77856 5.81484 6.01612 6.06442 6.25877 6.31327 6.37539 6.42481 6.46077 6.57930 6.65476 6.77957 6.88355 6.95130 7.15487 7.38224 7.66871 7.71955 7.79785 8.37839 8.45251 9.20941 9.84309 10.41043 11.29370 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028268 B = 0.003270 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.289659 B = 8559.809913 C = 8917.780924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.065 0.935 4 C -0.132 4.132 5 C 0.149 3.851 6 H 0.085 0.915 7 N -0.718 5.718 8 C 0.541 3.459 9 O -0.539 6.539 10 C -0.143 4.143 11 H 0.124 0.876 12 C -0.168 4.168 13 H 0.137 0.863 14 C 0.071 3.929 15 O -0.375 6.375 16 C 0.073 3.927 17 C -0.175 4.175 18 H 0.130 0.870 19 C -0.146 4.146 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.253 4.253 23 H 0.066 0.934 24 C 0.003 3.997 25 N -0.900 5.900 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.021 0.979 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 -8.074 18.109 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.046 3.954 6 H 0.103 0.897 7 N -0.367 5.367 8 C 0.326 3.674 9 O -0.416 6.416 10 C -0.165 4.165 11 H 0.142 0.858 12 C -0.187 4.187 13 H 0.154 0.846 14 C -0.005 4.005 15 O -0.294 6.294 16 C -0.004 4.004 17 C -0.193 4.193 18 H 0.148 0.852 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.084 0.916 24 C -0.195 4.195 25 N -0.544 5.544 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.039 0.961 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.293 -8.355 17.660 19.580 hybrid contribution 0.860 0.341 -0.754 1.193 sum 2.153 -8.014 16.907 18.834 Atomic orbital electron populations 1.22303 0.98689 1.01099 1.00099 1.20432 0.91786 0.95119 0.86489 0.91635 1.22294 1.01198 0.94112 0.99615 1.21130 0.99785 0.91360 0.83114 0.89682 1.46245 1.34446 1.26835 1.29174 1.19404 0.82756 0.80804 0.84428 1.90713 1.28117 1.65784 1.57001 1.22120 1.04223 0.91284 0.98827 0.85848 1.24001 0.97318 1.00035 0.97316 0.84552 1.22997 0.83366 1.00442 0.93729 1.89163 1.17938 1.87557 1.34709 1.22970 0.96023 0.99412 0.81978 1.24016 0.95915 0.98241 1.01166 0.85246 1.22567 1.00159 0.99081 0.96864 1.20742 0.97716 0.82906 0.93862 1.44175 1.63929 1.03415 1.19169 1.19186 1.22081 1.10315 0.86691 0.91614 1.25054 0.97694 0.99986 0.96814 1.70038 1.31771 1.35696 1.16908 0.86283 0.81247 0.78451 0.80832 1.21536 1.21818 1.20399 0.93236 0.94488 0.92574 0.92571 0.91845 0.77052 0.88453 0.90814 0.88392 0.90802 0.92679 0.93046 0.89298 0.96084 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.03 37.16 0.34 -2.79 16 2 C 0.17 3.42 3.28 -67.61 -0.22 3.19 16 3 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 4 C -0.13 -2.19 5.02 -26.63 -0.13 -2.32 16 5 C 0.15 2.58 2.21 -67.89 -0.15 2.43 16 6 H 0.09 1.66 5.94 -51.93 -0.31 1.36 16 7 N -0.72 -10.07 5.08 -53.77 -0.27 -10.34 16 8 C 0.54 7.98 7.57 -10.99 -0.08 7.90 16 9 O -0.54 -10.13 16.01 5.55 0.09 -10.04 16 10 C -0.14 -1.59 5.56 -91.77 -0.51 -2.10 16 11 H 0.12 1.21 8.06 -51.93 -0.42 0.79 16 12 C -0.17 -1.71 6.68 -89.08 -0.60 -2.30 16 13 H 0.14 1.52 7.82 -51.93 -0.41 1.11 16 14 C 0.07 0.59 7.53 37.94 0.29 0.88 16 15 O -0.37 -3.70 11.31 -35.23 -0.40 -4.09 16 16 C 0.07 0.59 7.54 37.95 0.29 0.87 16 17 C -0.17 -1.70 6.95 -89.07 -0.62 -2.32 16 18 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 19 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 20 C 0.17 4.18 4.89 -3.71 -0.02 4.16 16 21 N -0.59 -14.23 2.70 -164.80 -0.45 -14.68 16 22 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 23 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 24 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 25 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 26 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.05 0.99 5.74 -51.93 -0.30 0.69 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.40 4.42 8.60 -40.82 -0.35 4.06 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 43 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -31.33 347.01 -9.11 -40.44 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.10 Total: 4.77 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.80 Total: -2.39 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.10 Total: -50.39 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.31 Total: -14.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.33 -9.11 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947635584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.476 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds