Wall clock time and date at job start Tue Mar 31 2020 06:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.58904 * 2 1 4 4 C 1.53161 * 109.70646 * 120.36496 * 2 1 3 5 5 C 1.53041 * 109.33100 * 65.21221 * 4 2 1 6 6 H 1.09000 * 109.45702 * 301.35656 * 5 4 2 7 7 N 1.46500 * 109.46241 * 181.38628 * 5 4 2 8 8 C 1.34770 * 120.00157 * 154.97029 * 7 5 4 9 9 O 1.21289 * 119.99936 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00298 * 180.02562 * 8 7 5 11 11 H 1.08996 * 115.51103 * 34.62717 * 10 8 7 12 12 C 1.53000 * 117.43635 * 180.02562 * 10 8 7 13 13 H 1.08998 * 119.80690 * 354.34045 * 12 10 8 14 14 C 1.54483 * 118.06587 * 198.08770 * 12 10 8 15 15 O 1.44422 * 104.80098 * 321.12364 * 14 12 10 16 16 C 1.44426 * 105.27852 * 319.48810 * 15 14 12 17 17 C 1.53000 * 117.43331 * 249.34783 * 10 8 7 18 18 H 1.09002 * 119.80715 * 4.63441 * 17 10 8 19 19 C 1.53038 * 109.52868 * 61.36830 * 5 4 2 20 20 C 1.53189 * 109.31344 * 298.64645 * 19 5 4 21 21 N 1.46926 * 109.58492 * 239.71818 * 2 1 3 22 22 C 1.36934 * 120.63389 * 113.65934 * 21 2 1 23 23 H 1.07998 * 119.99697 * 27.92211 * 22 21 2 24 24 C 1.38805 * 120.00127 * 207.92743 * 22 21 2 25 25 N 1.31616 * 120.00369 * 17.07028 * 24 22 21 26 26 Si 1.86807 * 119.99901 * 197.07538 * 24 22 21 27 27 H 1.48499 * 109.47121 * 94.75058 * 26 24 22 28 28 H 1.48497 * 109.46941 * 214.75134 * 26 24 22 29 29 H 1.48501 * 109.47134 * 334.74900 * 26 24 22 30 30 H 1.09002 * 109.46981 * 180.28440 * 1 2 3 31 31 H 1.09001 * 109.47291 * 300.28216 * 1 2 3 32 32 H 1.09002 * 109.47464 * 60.28304 * 1 2 3 33 33 H 1.08994 * 109.47954 * 305.26158 * 4 2 1 34 34 H 1.09007 * 109.50083 * 185.17177 * 4 2 1 35 35 H 0.96999 * 119.99610 * 334.96874 * 7 5 4 36 36 H 1.08993 * 110.37651 * 79.95473 * 14 12 10 37 37 H 1.09003 * 110.36923 * 202.29354 * 14 12 10 38 38 H 1.08994 * 110.37467 * 159.34186 * 16 15 14 39 39 H 1.08997 * 110.37909 * 281.57401 * 16 15 14 40 40 H 1.08997 * 109.49598 * 58.59690 * 19 5 4 41 41 H 1.09003 * 109.49971 * 178.69283 * 19 5 4 42 42 H 1.09002 * 109.58953 * 174.41879 * 20 19 5 43 43 H 1.09004 * 109.58437 * 294.84367 * 20 19 5 44 44 H 0.97004 * 119.99998 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 1.2441 5 6 1.6473 -2.2044 1.1690 6 1 0.5624 -2.2840 1.0995 7 7 2.1112 -2.8975 2.3734 8 6 1.4864 -4.0167 2.7897 9 8 0.5403 -4.4505 2.1669 10 6 1.9633 -4.7294 4.0290 11 1 2.3465 -4.0870 4.8218 12 6 1.2117 -5.9945 4.4479 13 1 0.3121 -6.2935 3.9099 14 6 1.3846 -6.4957 5.8989 15 8 2.7790 -6.2735 6.2023 16 6 3.4931 -6.6433 5.0027 17 6 2.6302 -6.0940 3.8448 18 1 2.8116 -6.4773 2.8407 19 6 2.2857 -2.8449 -0.0656 20 6 1.7719 -2.1400 -1.3249 21 7 2.0225 -0.6980 -1.1954 22 6 2.7019 -0.0176 -2.1704 23 1 3.2685 0.8662 -1.9171 24 6 2.6621 -0.4638 -3.4842 25 7 1.7309 -1.3133 -3.8628 26 14 3.9303 0.1415 -4.7149 27 1 5.0524 -0.8285 -4.7871 28 1 3.2997 0.2694 -6.0532 29 1 4.4471 1.4650 -4.2828 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5094 -0.8925 33 1 1.6105 -0.2791 2.1361 34 1 3.1326 -0.6477 1.2888 35 1 2.8681 -2.5508 2.8713 36 1 0.7527 -5.9217 6.5765 37 1 1.1465 -7.5574 5.9645 38 1 4.4809 -6.1827 4.9918 39 1 3.5801 -7.7275 4.9317 40 1 3.3694 -2.7438 -0.0086 41 1 2.0200 -3.9013 -0.1060 42 1 2.2969 -2.5250 -2.1992 43 1 0.7016 -2.3167 -1.4317 44 1 1.7029 -1.6248 -4.7811 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947635584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:44 Heat of formation + Delta-G solvation = -51.719984 kcal Electronic energy + Delta-G solvation = -24289.367662 eV Core-core repulsion = 20821.231565 eV Total energy + Delta-G solvation = -3468.136097 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.82994 -40.53292 -39.18404 -36.08088 -35.33460 -34.31073 -32.51142 -31.38131 -29.67211 -28.72076 -27.42409 -26.13140 -24.07674 -23.58564 -22.38762 -21.68394 -21.06376 -20.02439 -19.00153 -18.36087 -17.40954 -17.00560 -16.73643 -16.36865 -16.25060 -15.76852 -15.53617 -15.46665 -15.20327 -14.66912 -14.35207 -14.18931 -14.12602 -13.90161 -13.51335 -13.17332 -12.93559 -12.77552 -12.68020 -12.59385 -12.54479 -12.31569 -12.05373 -11.99665 -11.79213 -11.51093 -11.40210 -11.26700 -11.12097 -10.92174 -10.57132 -10.56332 -10.02167 -8.69833 -7.86220 -5.31692 1.37160 1.47163 1.48479 1.57649 2.01303 2.51489 2.55513 2.95863 3.29375 3.54724 3.58320 3.62513 3.71044 3.83261 3.85564 4.07069 4.12434 4.27663 4.33091 4.42917 4.49998 4.51666 4.68947 4.69974 4.74778 4.77909 4.82543 4.84030 4.87749 4.89721 4.99397 5.06984 5.11899 5.14814 5.32003 5.42649 5.48388 5.56985 5.67894 5.73861 5.74245 6.40324 6.56771 7.15127 7.24238 7.86888 8.39210 9.20387 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028268 B = 0.003270 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.289659 B = 8559.809913 C = 8917.780924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.062 0.938 7 N -0.705 5.705 8 C 0.539 3.461 9 O -0.585 6.585 10 C -0.146 4.146 11 H 0.144 0.856 12 C -0.173 4.173 13 H 0.121 0.879 14 C 0.076 3.924 15 O -0.389 6.389 16 C 0.076 3.924 17 C -0.168 4.168 18 H 0.122 0.878 19 C -0.131 4.131 20 C 0.185 3.815 21 N -0.600 5.600 22 C -0.258 4.258 23 H 0.073 0.927 24 C -0.053 4.053 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.288 1.288 28 H -0.299 1.299 29 H -0.264 1.264 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.053 0.947 43 H -0.010 1.010 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 -7.680 20.975 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.089 0.911 4 C -0.157 4.157 5 C 0.056 3.944 6 H 0.080 0.920 7 N -0.355 5.355 8 C 0.326 3.674 9 O -0.466 6.466 10 C -0.167 4.167 11 H 0.161 0.839 12 C -0.191 4.191 13 H 0.139 0.861 14 C 0.000 4.000 15 O -0.308 6.308 16 C 0.000 4.000 17 C -0.187 4.187 18 H 0.140 0.860 19 C -0.171 4.171 20 C 0.059 3.941 21 N -0.322 5.322 22 C -0.388 4.388 23 H 0.090 0.910 24 C -0.248 4.248 25 N -0.583 5.583 26 Si 0.795 3.205 27 H -0.215 1.215 28 H -0.226 1.226 29 H -0.189 1.189 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.008 0.992 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.962 -7.934 20.589 22.262 hybrid contribution 0.295 0.212 -1.629 1.669 sum 3.257 -7.722 18.960 20.730 Atomic orbital electron populations 1.22188 0.98228 1.00240 1.00599 1.20707 0.92170 0.95554 0.86264 0.91110 1.22127 1.01947 0.92747 0.98893 1.20736 0.98208 0.92184 0.83246 0.91976 1.45973 1.34905 1.26557 1.28034 1.20032 0.81875 0.80460 0.85016 1.90701 1.30222 1.66906 1.58727 1.22006 1.05418 0.91866 0.97393 0.83873 1.24054 0.97061 0.99241 0.98787 0.86091 1.23086 0.83036 1.01579 0.92321 1.89152 1.18551 1.87814 1.35320 1.23100 0.95971 1.00467 0.80455 1.24098 0.96235 0.96731 1.01643 0.85979 1.22318 1.00313 0.98166 0.96347 1.20406 0.95391 0.83718 0.94611 1.44388 1.64279 1.03542 1.20024 1.19557 1.21760 1.10156 0.87315 0.90974 1.25817 0.99502 1.00745 0.98720 1.70208 1.33721 1.37521 1.16818 0.85264 0.78731 0.78424 0.78112 1.21498 1.22602 1.18883 0.94808 0.90663 0.95241 0.89037 0.90716 0.74813 0.87400 0.89085 0.86990 0.89074 0.92103 0.93960 0.92884 0.99218 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 9.03 71.98 0.65 -5.18 16 2 C 0.16 6.24 3.28 44.96 0.15 6.39 16 3 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 4 C -0.12 -3.57 5.02 30.66 0.15 -3.42 16 5 C 0.16 5.39 2.21 45.02 0.10 5.49 16 6 H 0.06 2.43 5.94 -2.39 -0.01 2.42 16 7 N -0.70 -18.35 5.08 -442.41 -2.25 -20.59 16 8 C 0.54 15.33 7.57 87.66 0.66 16.00 16 9 O -0.59 -22.27 16.01 -3.06 -0.05 -22.31 16 10 C -0.15 -2.95 5.56 -11.54 -0.06 -3.02 16 11 H 0.14 2.34 8.06 -2.39 -0.02 2.32 16 12 C -0.17 -3.25 6.68 -9.79 -0.07 -3.31 16 13 H 0.12 2.68 7.82 -2.39 -0.02 2.66 16 14 C 0.08 1.06 7.53 72.49 0.55 1.61 16 15 O -0.39 -6.45 11.31 -148.98 -1.69 -8.14 16 16 C 0.08 1.00 7.54 72.49 0.55 1.55 16 17 C -0.17 -2.95 6.95 -9.79 -0.07 -3.02 16 18 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 19 C -0.13 -5.27 5.65 30.67 0.17 -5.09 16 20 C 0.19 9.28 4.89 86.36 0.42 9.71 16 21 N -0.60 -29.53 2.70 -675.29 -1.82 -31.35 16 22 C -0.26 -13.92 9.58 84.03 0.81 -13.12 16 23 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 24 C -0.05 -2.94 4.91 84.86 0.42 -2.53 16 25 N -0.94 -56.33 11.19 21.65 0.24 -56.09 16 26 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 27 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 30 H 0.03 1.37 5.74 -2.39 -0.01 1.35 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.41 7.85 8.60 -92.71 -0.80 7.05 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 3.02 6.04 -2.39 -0.01 3.00 16 43 H -0.01 -0.57 7.50 -2.39 -0.02 -0.58 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -70.65 347.01 1.10 -69.56 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.20 Total: 19.95 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.43 Total: 2.05 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.83 Total: -108.04 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.73 Total: -30.45 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.65 1.10 -69.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947635584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.838 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds