Wall clock time and date at job start Tue Mar 31 2020 07:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46906 * 2 1 4 4 C 1.34780 * 120.00198 * 269.99889 * 3 2 1 5 5 O 1.21271 * 119.99931 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.99780 * 0.02562 * 4 3 2 7 7 H 1.09000 * 110.66847 * 61.76013 * 6 4 3 8 8 C 1.55002 * 110.74841 * 298.54700 * 6 4 3 9 9 C 1.55825 * 102.78624 * 241.67615 * 8 6 4 10 10 H 1.09007 * 115.38718 * 158.10813 * 9 8 6 11 11 C 1.55813 * 105.32613 * 286.58444 * 9 8 6 12 12 C 1.55002 * 102.79117 * 72.68856 * 11 9 8 13 13 C 1.55816 * 110.74766 * 185.17672 * 6 4 3 14 14 H 1.09002 * 115.39063 * 319.48625 * 13 6 4 15 15 O 1.46534 * 101.24460 * 85.90808 * 13 6 4 16 16 C 1.46506 * 119.99782 * 90.00028 * 3 2 1 17 17 C 1.53492 * 114.20690 * 60.00164 * 16 3 2 18 18 N 1.47064 * 87.98473 * 220.14379 * 17 16 3 19 19 C 1.36932 * 136.05908 * 207.07584 * 18 17 16 20 20 H 1.08001 * 119.99827 * 7.83717 * 19 18 17 21 21 C 1.38812 * 120.00290 * 187.82461 * 19 18 17 22 22 N 1.31621 * 120.00505 * 195.18017 * 21 19 18 23 23 Si 1.86807 * 119.99618 * 15.18810 * 21 19 18 24 24 H 1.48498 * 109.46821 * 269.99539 * 23 21 19 25 25 H 1.48505 * 109.46823 * 149.99428 * 23 21 19 26 26 H 1.48500 * 109.46992 * 29.99740 * 23 21 19 27 27 C 1.47071 * 87.88256 * 27.34384 * 18 17 16 28 28 H 1.09002 * 109.47169 * 299.99790 * 1 2 3 29 29 H 1.09002 * 109.47280 * 59.99989 * 1 2 3 30 30 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47169 * 240.00210 * 2 1 3 32 32 H 1.08994 * 109.47399 * 119.99752 * 2 1 3 33 33 H 1.09007 * 110.74906 * 359.97438 * 8 6 4 34 34 H 1.09001 * 110.75357 * 123.35111 * 8 6 4 35 35 H 1.09002 * 110.75074 * 191.01480 * 11 9 8 36 36 H 1.08999 * 110.75127 * 314.17871 * 11 9 8 37 37 H 1.09002 * 110.75110 * 118.32376 * 12 11 9 38 38 H 1.08996 * 110.74784 * 241.67337 * 12 11 9 39 39 H 1.09004 * 113.28079 * 193.06657 * 16 3 2 40 40 H 1.08994 * 113.46766 * 105.36488 * 17 16 3 41 41 H 1.09006 * 113.46736 * 334.92469 * 17 16 3 42 42 H 0.97004 * 119.99489 * 354.91795 * 22 21 19 43 43 H 1.08993 * 113.47033 * 87.43798 * 27 18 17 44 44 H 1.09001 * 113.46589 * 217.87539 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0167 -1.1672 5 8 2.6467 3.1602 -1.1671 6 6 1.9912 1.3065 -2.4723 7 1 0.9406 1.0309 -2.5640 8 6 2.8998 0.0573 -2.6018 9 6 3.7551 0.3822 -3.8631 10 1 4.6992 -0.1574 -3.9392 11 6 2.7877 0.2098 -5.0723 12 6 1.8660 1.4504 -4.9539 13 6 2.4422 2.1872 -3.6759 14 1 2.2093 3.2487 -3.5915 15 8 3.8630 1.8404 -3.7673 16 6 2.2624 2.0719 1.2688 17 6 3.3083 1.3929 2.1638 18 7 2.4507 1.7077 3.3162 19 6 2.6392 1.9289 4.6544 20 1 3.6398 2.0102 5.0525 21 6 1.5442 2.0489 5.4991 22 7 1.6962 2.5507 6.7064 23 14 -0.1450 1.4981 4.9224 24 1 -0.8396 2.6354 4.2673 25 1 -0.9405 1.0378 6.0889 26 1 0.0023 0.3831 3.9527 27 6 1.3006 1.6737 2.4002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.5348 -0.0512 -1.7224 34 1 2.3020 -0.8402 -2.7612 35 1 3.3383 0.2262 -6.0128 36 1 2.2132 -0.7118 -4.9790 37 1 1.9574 2.0850 -5.8354 38 1 0.8300 1.1485 -4.8000 39 1 2.4023 3.1468 1.1543 40 1 4.2668 1.9116 2.1816 41 1 3.4104 0.3237 1.9779 42 1 2.5833 2.7680 7.0331 43 1 0.8734 0.6786 2.2766 44 1 0.5485 2.4316 2.6195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952299126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:29 Heat of formation + Delta-G solvation = 6.843193 kcal Electronic energy + Delta-G solvation = -25167.765010 eV Core-core repulsion = 21702.168403 eV Total energy + Delta-G solvation = -3465.596607 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.37077 -39.68575 -37.83876 -35.36542 -32.66608 -32.26859 -31.08457 -30.43849 -29.82697 -27.72709 -25.34460 -24.15113 -23.50726 -22.29656 -21.70284 -20.58058 -19.65899 -18.75955 -17.63926 -17.18158 -16.99595 -16.30284 -15.61394 -15.49990 -15.03651 -14.48788 -14.33278 -13.87174 -13.61265 -13.48413 -13.33695 -12.93162 -12.83037 -12.50517 -12.13578 -12.03655 -11.87579 -11.76670 -11.68814 -11.53933 -11.35434 -11.29754 -11.13972 -11.00938 -10.69562 -10.60364 -10.22644 -10.10024 -9.70614 -9.49685 -9.24709 -8.73924 -8.32567 -7.21606 -6.33921 -3.26030 2.72781 3.03366 3.37824 3.43402 3.58775 3.59750 4.14748 4.24196 4.37846 4.52481 4.56397 4.60527 4.79090 4.80916 4.86625 4.92684 4.95917 5.03706 5.14958 5.19150 5.30933 5.38290 5.40531 5.47298 5.51323 5.62273 5.67170 5.69874 5.74171 5.78960 5.81822 5.85818 5.94029 6.08431 6.23741 6.27976 6.33925 6.39261 6.52933 6.99321 7.07371 7.59686 8.21688 8.33136 8.94637 9.47128 10.32606 11.16296 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032737 B = 0.004021 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.090328 B = 6962.478535 C = 7257.136479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.090 3.910 3 N -0.595 5.595 4 C 0.524 3.476 5 O -0.535 6.535 6 C -0.140 4.140 7 H 0.108 0.892 8 C -0.141 4.141 9 C 0.059 3.941 10 H 0.130 0.870 11 C -0.148 4.148 12 C -0.149 4.149 13 C 0.088 3.912 14 H 0.139 0.861 15 O -0.362 6.362 16 C 0.102 3.898 17 C 0.107 3.893 18 N -0.617 5.617 19 C -0.305 4.305 20 H 0.083 0.917 21 C -0.022 4.022 22 N -0.930 5.930 23 Si 1.062 2.938 24 H -0.293 1.293 25 H -0.294 1.294 26 H -0.282 1.282 27 C 0.092 3.908 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.262 0.738 43 H 0.053 0.947 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -9.166 -25.058 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.033 4.033 3 N -0.328 5.328 4 C 0.311 3.689 5 O -0.412 6.412 6 C -0.161 4.161 7 H 0.126 0.874 8 C -0.179 4.179 9 C 0.001 3.999 10 H 0.147 0.853 11 C -0.186 4.186 12 C -0.187 4.187 13 C 0.030 3.970 14 H 0.157 0.843 15 O -0.281 6.281 16 C -0.002 4.002 17 C -0.020 4.020 18 N -0.345 5.345 19 C -0.431 4.431 20 H 0.101 0.899 21 C -0.222 4.222 22 N -0.571 5.571 23 Si 0.893 3.107 24 H -0.220 1.220 25 H -0.222 1.222 26 H -0.209 1.209 27 C -0.035 4.035 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.141 0.859 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.084 -8.426 -24.310 25.913 hybrid contribution 1.342 -0.352 -0.222 1.405 sum -1.741 -8.778 -24.532 26.113 Atomic orbital electron populations 1.22336 0.95894 1.02305 1.02919 1.21827 0.94692 0.82987 1.03830 1.48001 1.64951 1.13985 1.05845 1.20302 0.77174 0.86511 0.84868 1.90689 1.45322 1.17946 1.87236 1.23102 1.01878 0.97017 0.94148 0.87376 1.23377 0.98151 0.96720 0.99637 1.24703 0.98323 0.83109 0.93758 0.85282 1.23232 0.97837 0.98464 0.99072 1.23685 0.99419 0.96978 0.98611 1.25010 0.80914 0.99668 0.91442 0.84346 1.90152 1.24146 1.19738 1.94047 1.23515 0.98460 0.98343 0.79859 1.22774 0.95422 0.97042 0.86778 1.45887 1.02872 1.81890 1.03821 1.20111 0.95573 1.47713 0.79692 0.89887 1.25787 1.02832 0.98810 0.94739 1.70896 1.24866 1.42697 1.18679 0.83780 0.75665 0.76587 0.74628 1.22038 1.22157 1.20889 1.23206 0.92999 0.99171 0.88108 0.91352 0.92666 0.91518 0.89693 0.89712 0.89848 0.89486 0.90826 0.90454 0.90562 0.90435 0.85880 0.93306 0.94637 0.92738 0.92948 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.92 37.16 0.37 -1.48 16 2 C 0.09 1.03 4.83 -4.04 -0.02 1.01 16 3 N -0.60 -8.89 2.70 -165.74 -0.45 -9.34 16 4 C 0.52 7.90 6.93 -10.98 -0.08 7.82 16 5 O -0.54 -10.26 15.40 5.57 0.09 -10.18 16 6 C -0.14 -1.47 2.12 -89.21 -0.19 -1.66 16 7 H 0.11 0.90 7.01 -51.93 -0.36 0.53 16 8 C -0.14 -1.20 4.10 -24.17 -0.10 -1.30 16 9 C 0.06 0.52 5.66 -23.72 -0.13 0.38 16 10 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.15 -0.99 6.53 -24.17 -0.16 -1.15 16 12 C -0.15 -1.11 6.62 -22.71 -0.15 -1.26 16 13 C 0.09 0.96 4.74 -22.26 -0.11 0.85 16 14 H 0.14 1.63 7.74 -51.93 -0.40 1.23 16 15 O -0.36 -4.71 11.66 -35.23 -0.41 -5.13 16 16 C 0.10 1.93 4.57 -67.68 -0.31 1.62 16 17 C 0.11 2.20 8.24 -8.52 -0.07 2.13 16 18 N -0.62 -15.37 3.62 -184.65 -0.67 -16.04 16 19 C -0.30 -8.87 11.03 -15.06 -0.17 -9.04 16 20 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 21 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 22 N -0.93 -29.49 13.70 55.49 0.76 -28.73 16 23 Si 1.06 26.47 25.50 -169.99 -4.34 22.14 16 24 H -0.29 -7.06 6.97 56.52 0.39 -6.67 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.39 5.66 56.52 0.32 -6.07 16 27 C 0.09 1.93 4.32 -8.38 -0.04 1.89 16 28 H 0.07 0.88 6.10 -51.93 -0.32 0.56 16 29 H 0.05 0.51 7.33 -51.93 -0.38 0.13 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.74 4.12 -51.93 -0.21 0.52 16 32 H 0.08 1.07 6.17 -51.93 -0.32 0.75 16 33 H 0.08 0.83 7.04 -51.92 -0.37 0.46 16 34 H 0.09 0.50 7.37 -51.93 -0.38 0.12 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.39 7.80 -51.93 -0.40 -0.02 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.46 7.84 -51.93 -0.41 0.05 16 39 H 0.12 2.56 7.29 -51.93 -0.38 2.18 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.68 6.96 -51.93 -0.36 0.31 16 42 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 43 H 0.05 1.04 4.08 -51.93 -0.21 0.82 16 44 H 0.05 1.20 6.22 -51.93 -0.32 0.87 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -35.16 328.02 -7.93 -43.09 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.61 Total: 0.18 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.24 Total: -0.94 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.36 Total: -54.11 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.33 Total: -15.30 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -4.34 Total: 22.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.16 -7.93 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952299126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.934 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds