Wall clock time and date at job start Tue Mar 31 2020 07:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46906 * 2 1 4 4 C 1.34780 * 120.00198 * 269.99889 * 3 2 1 5 5 O 1.21271 * 119.99931 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.99780 * 0.02562 * 4 3 2 7 7 H 1.09000 * 110.66847 * 61.76013 * 6 4 3 8 8 C 1.55002 * 110.74841 * 298.54700 * 6 4 3 9 9 C 1.55825 * 102.78624 * 241.67615 * 8 6 4 10 10 H 1.09007 * 115.38718 * 158.10813 * 9 8 6 11 11 C 1.55813 * 105.32613 * 286.58444 * 9 8 6 12 12 C 1.55002 * 102.79117 * 72.68856 * 11 9 8 13 13 C 1.55816 * 110.74766 * 185.17672 * 6 4 3 14 14 H 1.09002 * 115.39063 * 319.48625 * 13 6 4 15 15 O 1.46534 * 101.24460 * 85.90808 * 13 6 4 16 16 C 1.46506 * 119.99782 * 90.00028 * 3 2 1 17 17 C 1.53492 * 114.20690 * 60.00164 * 16 3 2 18 18 N 1.47064 * 87.98473 * 220.14379 * 17 16 3 19 19 C 1.36932 * 136.05908 * 207.07584 * 18 17 16 20 20 H 1.08001 * 119.99827 * 7.83717 * 19 18 17 21 21 C 1.38812 * 120.00290 * 187.82461 * 19 18 17 22 22 N 1.31621 * 120.00505 * 195.18017 * 21 19 18 23 23 Si 1.86807 * 119.99618 * 15.18810 * 21 19 18 24 24 H 1.48498 * 109.46821 * 269.99539 * 23 21 19 25 25 H 1.48505 * 109.46823 * 149.99428 * 23 21 19 26 26 H 1.48500 * 109.46992 * 29.99740 * 23 21 19 27 27 C 1.47071 * 87.88256 * 27.34384 * 18 17 16 28 28 H 1.09002 * 109.47169 * 299.99790 * 1 2 3 29 29 H 1.09002 * 109.47280 * 59.99989 * 1 2 3 30 30 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47169 * 240.00210 * 2 1 3 32 32 H 1.08994 * 109.47399 * 119.99752 * 2 1 3 33 33 H 1.09007 * 110.74906 * 359.97438 * 8 6 4 34 34 H 1.09001 * 110.75357 * 123.35111 * 8 6 4 35 35 H 1.09002 * 110.75074 * 191.01480 * 11 9 8 36 36 H 1.08999 * 110.75127 * 314.17871 * 11 9 8 37 37 H 1.09002 * 110.75110 * 118.32376 * 12 11 9 38 38 H 1.08996 * 110.74784 * 241.67337 * 12 11 9 39 39 H 1.09004 * 113.28079 * 193.06657 * 16 3 2 40 40 H 1.08994 * 113.46766 * 105.36488 * 17 16 3 41 41 H 1.09006 * 113.46736 * 334.92469 * 17 16 3 42 42 H 0.97004 * 119.99489 * 354.91795 * 22 21 19 43 43 H 1.08993 * 113.47033 * 87.43798 * 27 18 17 44 44 H 1.09001 * 113.46589 * 217.87539 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0167 -1.1672 5 8 2.6467 3.1602 -1.1671 6 6 1.9912 1.3065 -2.4723 7 1 0.9406 1.0309 -2.5640 8 6 2.8998 0.0573 -2.6018 9 6 3.7551 0.3822 -3.8631 10 1 4.6992 -0.1574 -3.9392 11 6 2.7877 0.2098 -5.0723 12 6 1.8660 1.4504 -4.9539 13 6 2.4422 2.1872 -3.6759 14 1 2.2093 3.2487 -3.5915 15 8 3.8630 1.8404 -3.7673 16 6 2.2624 2.0719 1.2688 17 6 3.3083 1.3929 2.1638 18 7 2.4507 1.7077 3.3162 19 6 2.6392 1.9289 4.6544 20 1 3.6398 2.0102 5.0525 21 6 1.5442 2.0489 5.4991 22 7 1.6962 2.5507 6.7064 23 14 -0.1450 1.4981 4.9224 24 1 -0.8396 2.6354 4.2673 25 1 -0.9405 1.0378 6.0889 26 1 0.0023 0.3831 3.9527 27 6 1.3006 1.6737 2.4002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.5348 -0.0512 -1.7224 34 1 2.3020 -0.8402 -2.7612 35 1 3.3383 0.2262 -6.0128 36 1 2.2132 -0.7118 -4.9790 37 1 1.9574 2.0850 -5.8354 38 1 0.8300 1.1485 -4.8000 39 1 2.4023 3.1468 1.1543 40 1 4.2668 1.9116 2.1816 41 1 3.4104 0.3237 1.9779 42 1 2.5833 2.7680 7.0331 43 1 0.8734 0.6786 2.2766 44 1 0.5485 2.4316 2.6195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952299126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:28 Heat of formation + Delta-G solvation = -19.158205 kcal Electronic energy + Delta-G solvation = -25168.892515 eV Core-core repulsion = 21702.168403 eV Total energy + Delta-G solvation = -3466.724112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.27054 -40.96193 -39.27093 -36.63925 -34.58198 -33.30797 -31.88303 -31.47222 -30.49211 -29.57658 -27.05786 -25.33026 -24.70326 -23.26292 -22.70604 -21.53443 -20.94989 -19.97122 -19.62492 -18.31093 -17.99871 -17.42625 -16.90484 -16.56809 -16.26366 -15.84481 -15.34693 -15.31627 -15.20690 -14.59048 -14.48614 -14.12937 -13.75863 -13.60273 -13.50503 -13.25210 -13.19316 -12.78252 -12.71447 -12.58797 -12.46554 -12.31378 -12.02589 -12.01166 -11.89681 -11.72911 -11.56713 -11.41363 -11.30193 -10.93933 -10.85127 -10.59509 -9.65089 -9.30973 -8.68924 -5.53751 1.36479 1.47988 1.57883 1.64358 1.85132 2.51597 2.89694 3.00674 3.11208 3.33895 3.51640 3.55575 3.69024 3.80894 3.96401 4.03037 4.11291 4.15040 4.24397 4.29355 4.36403 4.46530 4.48027 4.51610 4.52376 4.61023 4.63701 4.68624 4.86574 4.88525 4.99404 5.00945 5.05913 5.10835 5.12843 5.14771 5.19408 5.28616 5.43022 5.59671 5.69905 5.89158 6.43474 6.63298 7.15986 7.26028 8.19141 8.82941 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032737 B = 0.004021 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.090328 B = 6962.478535 C = 7257.136479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 N -0.592 5.592 4 C 0.517 3.483 5 O -0.588 6.588 6 C -0.130 4.130 7 H 0.143 0.857 8 C -0.137 4.137 9 C 0.050 3.950 10 H 0.140 0.860 11 C -0.140 4.140 12 C -0.139 4.139 13 C 0.072 3.928 14 H 0.114 0.886 15 O -0.408 6.408 16 C 0.122 3.878 17 C 0.110 3.890 18 N -0.649 5.649 19 C -0.297 4.297 20 H 0.048 0.952 21 C -0.081 4.081 22 N -0.965 5.965 23 Si 1.101 2.899 24 H -0.282 1.282 25 H -0.298 1.298 26 H -0.243 1.243 27 C 0.096 3.904 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.065 0.935 42 H 0.247 0.753 43 H 0.081 0.919 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -12.624 -28.654 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.039 4.039 3 N -0.324 5.324 4 C 0.307 3.693 5 O -0.468 6.468 6 C -0.151 4.151 7 H 0.160 0.840 8 C -0.175 4.175 9 C -0.007 4.007 10 H 0.158 0.842 11 C -0.177 4.177 12 C -0.176 4.176 13 C 0.014 3.986 14 H 0.131 0.869 15 O -0.328 6.328 16 C 0.016 3.984 17 C -0.017 4.017 18 N -0.378 5.378 19 C -0.424 4.424 20 H 0.066 0.934 21 C -0.273 4.273 22 N -0.609 5.609 23 Si 0.925 3.075 24 H -0.209 1.209 25 H -0.225 1.225 26 H -0.167 1.167 27 C -0.029 4.029 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.246 -11.930 -27.974 30.861 hybrid contribution 2.189 0.777 0.819 2.463 sum -3.057 -11.153 -27.155 29.515 Atomic orbital electron populations 1.22345 0.94548 1.04067 1.02419 1.22183 0.95784 0.80638 1.05289 1.48021 1.64884 1.15299 1.04180 1.21261 0.75719 0.86062 0.86228 1.90673 1.47530 1.20541 1.88007 1.23166 1.04168 0.97226 0.90525 0.83984 1.23458 0.97976 0.97118 0.98932 1.25008 0.99655 0.81058 0.95008 0.84247 1.23242 0.97276 0.99142 0.98055 1.23666 1.00717 0.96851 0.96415 1.25083 0.80682 0.99134 0.93730 0.86862 1.90119 1.25601 1.22616 1.94419 1.22777 0.96721 0.97201 0.81666 1.22926 0.94877 0.98561 0.85308 1.45859 1.05952 1.82812 1.03185 1.19934 0.94138 1.46272 0.82057 0.93396 1.27207 1.06914 0.98817 0.94377 1.71016 1.23936 1.45554 1.20403 0.83366 0.71271 0.77786 0.75110 1.20897 1.22535 1.16702 1.23361 0.92016 1.00145 0.87386 0.93959 0.91129 0.88585 0.86073 0.90484 0.91356 0.85128 0.90613 0.87457 0.90690 0.87953 0.88586 0.94615 0.91702 0.94387 0.90134 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 9.92 71.98 0.71 -2.04 16 2 C 0.08 1.51 4.83 86.38 0.42 1.93 16 3 N -0.59 -16.39 2.70 -796.67 -2.15 -18.54 16 4 C 0.52 14.87 6.93 87.66 0.61 15.48 16 5 O -0.59 -23.07 15.40 -3.00 -0.05 -23.12 16 6 C -0.13 -2.28 2.12 -9.88 -0.02 -2.30 16 7 H 0.14 1.54 7.01 -2.39 -0.02 1.52 16 8 C -0.14 -1.72 4.10 32.26 0.13 -1.58 16 9 C 0.05 0.71 5.66 32.54 0.18 0.89 16 10 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 11 C -0.14 -1.22 6.53 32.25 0.21 -1.01 16 12 C -0.14 -1.55 6.62 33.20 0.22 -1.33 16 13 C 0.07 1.46 4.74 33.49 0.16 1.62 16 14 H 0.11 2.76 7.74 -2.39 -0.02 2.75 16 15 O -0.41 -10.28 11.66 -148.98 -1.74 -12.02 16 16 C 0.12 4.55 4.57 45.55 0.21 4.75 16 17 C 0.11 4.46 8.24 83.17 0.69 5.15 16 18 N -0.65 -32.43 3.62 -738.10 -2.67 -35.10 16 19 C -0.30 -17.80 11.03 84.03 0.93 -16.87 16 20 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 21 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 22 N -0.96 -63.43 13.70 21.65 0.30 -63.14 16 23 Si 1.10 52.82 25.50 68.60 1.75 54.57 16 24 H -0.28 -12.97 6.97 99.48 0.69 -12.28 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 26 H -0.24 -9.94 5.66 99.48 0.56 -9.38 16 27 C 0.10 3.91 4.32 83.26 0.36 4.26 16 28 H 0.04 0.90 6.10 -2.39 -0.01 0.89 16 29 H 0.07 0.90 7.33 -2.39 -0.02 0.89 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.12 1.38 4.12 -2.39 -0.01 1.37 16 32 H 0.08 1.59 6.17 -2.39 -0.01 1.57 16 33 H 0.07 1.10 7.04 -2.38 -0.02 1.08 16 34 H 0.13 0.53 7.37 -2.39 -0.02 0.52 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.11 0.35 7.80 -2.39 -0.02 0.33 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.65 7.84 -2.39 -0.02 0.63 16 39 H 0.10 4.13 7.29 -2.38 -0.02 4.11 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 2.31 6.96 -2.38 -0.02 2.29 16 42 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 43 H 0.08 2.87 4.08 -2.39 -0.01 2.87 16 44 H 0.04 1.85 6.22 -2.39 -0.01 1.84 16 Total: -1.00 -82.92 328.02 1.52 -81.40 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.81 Total: 11.46 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.27 Total: 4.49 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.53 Total: -116.78 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.78 Total: -35.14 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 1.75 Total: 54.57 kcal Total: -82.92 1.52 -81.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952299126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.243 kcal (2) G-P(sol) polarization free energy of solvation -82.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds