Wall clock time and date at job start Tue Mar 31 2020 07:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.34784 * 119.99893 * 90.00083 * 3 2 1 5 5 O 1.21274 * 119.99897 * 179.73022 * 4 3 2 6 6 C 1.50695 * 119.99635 * 0.02562 * 4 3 2 7 7 H 1.08999 * 115.56830 * 34.39150 * 6 4 3 8 8 C 1.53191 * 117.52290 * 248.60663 * 6 4 3 9 9 C 1.52114 * 59.76913 * 252.58160 * 8 6 4 10 10 C 1.53708 * 121.73617 * 111.09673 * 9 8 6 11 11 C 1.54697 * 103.69344 * 143.46877 * 10 9 8 12 12 O 1.44495 * 104.86746 * 23.84407 * 11 10 9 13 13 C 1.44642 * 105.46689 * 320.02208 * 12 11 10 14 14 C 1.46499 * 120.00136 * 270.00278 * 3 2 1 15 15 C 1.53940 * 113.74296 * 36.67641 * 14 3 2 16 16 N 1.47585 * 86.11413 * 222.04719 * 15 14 3 17 17 C 1.36939 * 134.48863 * 204.63915 * 16 15 14 18 18 H 1.08008 * 119.99749 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00278 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00074 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47139 * 59.99347 * 21 19 17 23 23 H 1.48497 * 109.47079 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46746 * 299.99938 * 21 19 17 25 25 C 1.47575 * 91.01663 * 24.63634 * 16 15 14 26 26 H 1.08998 * 109.47554 * 59.99767 * 1 2 3 27 27 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47172 * 299.99762 * 1 2 3 29 29 H 1.08997 * 109.47172 * 240.00238 * 2 1 3 30 30 H 1.08998 * 109.47554 * 120.00233 * 2 1 3 31 31 H 1.09002 * 117.51969 * 0.02562 * 8 6 4 32 32 H 1.08999 * 117.52183 * 145.15548 * 8 6 4 33 33 H 1.08999 * 110.58288 * 262.02144 * 10 9 8 34 34 H 1.09000 * 110.57733 * 24.77074 * 10 9 8 35 35 H 1.08998 * 110.36217 * 142.69303 * 11 10 9 36 36 H 1.09008 * 110.36359 * 264.89482 * 11 10 9 37 37 H 1.08996 * 110.41699 * 280.88175 * 13 12 11 38 38 H 1.09000 * 110.41554 * 158.41750 * 13 12 11 39 39 H 1.09008 * 112.94224 * 168.40357 * 14 3 2 40 40 H 1.09004 * 113.76701 * 336.34442 * 15 14 3 41 41 H 1.08997 * 113.77318 * 107.74897 * 15 14 3 42 42 H 0.96990 * 119.99846 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.77191 * 221.05684 * 25 16 15 44 44 H 1.09004 * 113.86882 * 89.67785 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6519 3.1583 1.1673 6 6 1.9923 1.3059 2.4723 7 1 2.2037 0.2366 2.4738 8 6 0.8248 1.7978 3.3334 9 6 2.2591 2.0779 3.7556 10 6 2.8447 3.4989 3.7367 11 6 3.7663 3.5318 4.9788 12 8 4.1032 2.1488 5.2271 13 6 2.8853 1.4061 4.9878 14 6 2.2624 2.0718 -1.2687 15 6 1.2459 1.7219 -2.3705 16 7 2.4043 1.6725 -3.2837 17 6 2.5694 1.8322 -4.6337 18 1 3.5528 1.7438 -5.0716 19 6 1.4729 2.1066 -5.4395 20 7 0.2744 2.2129 -4.9061 21 14 1.6982 2.3237 -7.2812 22 1 2.2668 1.0802 -7.8603 23 1 0.3833 2.6063 -7.9107 24 1 2.6236 3.4568 -7.5364 25 6 3.3129 1.3821 -2.1578 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.2381 2.6352 2.9555 32 1 0.2689 1.0522 3.9017 33 1 3.4219 3.6635 2.8269 34 1 2.0515 4.2413 3.8256 35 1 4.6663 4.1094 4.7681 36 1 3.2368 3.9540 5.8329 37 1 2.2168 1.4855 5.8451 38 1 3.1124 0.3611 4.7769 39 1 2.4269 3.1423 -1.1450 40 1 0.7577 0.7578 -2.2277 41 1 0.5449 2.5263 -2.5932 42 1 -0.4917 2.4050 -5.4691 43 1 4.2622 1.9151 -2.2105 44 1 3.4333 0.3186 -1.9512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957108805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:19 Heat of formation + Delta-G solvation = 15.753596 kcal Electronic energy + Delta-G solvation = -24557.745587 eV Core-core repulsion = 21092.535364 eV Total energy + Delta-G solvation = -3465.210223 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69023 -39.27353 -37.68468 -35.71888 -35.00212 -32.08034 -30.42374 -30.11433 -28.01334 -27.29106 -24.87481 -24.63637 -23.33394 -22.86883 -22.39945 -20.25114 -19.13270 -18.33824 -17.38530 -16.73934 -16.30831 -15.97817 -15.80707 -15.37354 -14.85964 -14.63661 -14.22723 -13.86487 -13.53073 -13.49156 -12.99431 -12.86151 -12.58244 -12.48118 -12.24983 -12.10326 -11.63622 -11.53744 -11.53490 -11.21021 -11.04320 -10.90469 -10.86182 -10.67414 -10.52381 -10.26947 -10.11160 -10.03442 -9.85883 -9.55446 -9.13813 -8.81765 -8.16455 -6.92659 -5.80835 -3.13441 2.64161 3.16850 3.38763 3.42664 3.43736 3.56979 3.88408 4.23483 4.44664 4.47461 4.62315 4.76730 4.90024 5.05896 5.12200 5.19006 5.29269 5.31205 5.37782 5.39984 5.44160 5.46733 5.56626 5.59092 5.66250 5.70221 5.80307 5.88296 5.92460 5.98398 6.07545 6.19751 6.35778 6.38596 6.48012 6.59985 6.64156 6.84798 7.17015 7.34014 7.49608 7.78665 7.93638 8.47741 9.00637 9.66496 10.53760 11.36306 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031918 B = 0.003411 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.041739 B = 8207.280747 C = 8584.315221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.542 3.458 5 O -0.541 6.541 6 C -0.169 4.169 7 H 0.125 0.875 8 C -0.133 4.133 9 C -0.132 4.132 10 C -0.129 4.129 11 C 0.045 3.955 12 O -0.375 6.375 13 C 0.083 3.917 14 C 0.091 3.909 15 C 0.155 3.845 16 N -0.606 5.606 17 C -0.224 4.224 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.108 3.892 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.255 0.745 43 H 0.046 0.954 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 -3.817 19.722 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.018 4.018 3 N -0.321 5.321 4 C 0.330 3.670 5 O -0.420 6.420 6 C -0.190 4.190 7 H 0.142 0.858 8 C -0.170 4.170 9 C -0.133 4.133 10 C -0.166 4.166 11 C -0.032 4.032 12 O -0.294 6.294 13 C 0.006 3.994 14 C -0.013 4.013 15 C 0.029 3.971 16 N -0.332 5.332 17 C -0.351 4.351 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.019 4.019 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.132 0.868 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.688 -3.232 19.411 19.690 hybrid contribution -0.277 -0.149 -1.214 1.254 sum 0.410 -3.381 18.197 18.513 Atomic orbital electron populations 1.22347 0.95647 1.02087 1.03277 1.21536 0.94810 0.82688 1.02792 1.48144 1.63985 1.14012 1.05963 1.19583 0.77189 0.85973 0.84252 1.90561 1.46495 1.18145 1.86759 1.22279 1.06073 1.00122 0.90562 0.85752 1.22883 0.89978 1.03330 1.00835 1.22139 0.98831 0.97513 0.94835 1.22720 0.99822 0.93457 1.00590 1.23512 0.99523 0.83652 0.96486 1.89152 1.31555 1.18402 1.90266 1.22781 0.86323 0.96143 0.94131 1.24021 0.99470 0.97856 0.79930 1.22761 0.91391 0.99439 0.83544 1.45654 1.03513 1.81997 1.02065 1.18954 0.94039 1.41922 0.80220 0.90129 1.24791 0.95212 1.02028 0.98239 1.69799 0.98137 1.54511 1.34312 0.86169 0.76750 0.78042 0.84610 1.21152 1.21516 1.20989 1.22970 0.94737 0.96932 0.87299 0.90697 0.91952 0.92713 0.89813 0.90991 0.87845 0.87588 0.86586 0.90618 0.89144 0.92662 0.91537 0.89087 0.86811 0.94409 0.90689 0.93524 0.93565 0.94780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.91 37.16 0.37 -1.78 16 2 C 0.10 1.36 5.10 -4.04 -0.02 1.33 16 3 N -0.59 -9.41 2.69 -167.92 -0.45 -9.87 16 4 C 0.54 8.48 7.46 -10.98 -0.08 8.40 16 5 O -0.54 -10.09 12.83 5.56 0.07 -10.02 16 6 C -0.17 -1.94 5.17 -92.12 -0.48 -2.42 16 7 H 0.12 1.18 6.44 -51.93 -0.33 0.85 16 8 C -0.13 -1.26 10.01 -27.08 -0.27 -1.53 16 9 C -0.13 -1.44 2.50 -154.69 -0.39 -1.82 16 10 C -0.13 -1.55 5.96 -25.47 -0.15 -1.71 16 11 C 0.04 0.48 7.65 38.05 0.29 0.77 16 12 O -0.38 -4.61 11.65 -35.23 -0.41 -5.02 16 13 C 0.08 0.80 7.44 37.51 0.28 1.08 16 14 C 0.09 1.80 4.39 -70.16 -0.31 1.49 16 15 C 0.15 3.56 6.33 -2.97 -0.02 3.54 16 16 N -0.61 -15.54 3.70 -178.11 -0.66 -16.20 16 17 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 18 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -26.99 11.39 55.49 0.63 -26.35 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.11 2.26 8.46 -2.98 -0.03 2.24 16 26 H 0.07 1.13 5.85 -51.93 -0.30 0.83 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.19 6.36 -51.93 -0.33 0.86 16 30 H 0.07 0.72 6.00 -51.93 -0.31 0.41 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.12 1.75 5.47 -51.93 -0.28 1.47 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 39 H 0.11 2.48 7.25 -51.92 -0.38 2.10 16 40 H 0.04 0.85 5.01 -51.93 -0.26 0.59 16 41 H 0.07 1.96 7.16 -51.93 -0.37 1.59 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.68 6.98 -51.93 -0.36 0.31 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -32.24 343.76 -8.43 -40.67 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.71 Total: 1.70 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.06 Total: 2.88 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.48 Total: -52.42 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.34 Total: -15.04 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.24 -8.43 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957108805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.420 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds