Wall clock time and date at job start Tue Mar 31 2020 07:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.34784 * 119.99893 * 90.00083 * 3 2 1 5 5 O 1.21274 * 119.99897 * 179.73022 * 4 3 2 6 6 C 1.50695 * 119.99635 * 0.02562 * 4 3 2 7 7 H 1.08999 * 115.56830 * 34.39150 * 6 4 3 8 8 C 1.53191 * 117.52290 * 248.60663 * 6 4 3 9 9 C 1.52114 * 59.76913 * 252.58160 * 8 6 4 10 10 C 1.53708 * 121.73617 * 111.09673 * 9 8 6 11 11 C 1.54697 * 103.69344 * 143.46877 * 10 9 8 12 12 O 1.44495 * 104.86746 * 23.84407 * 11 10 9 13 13 C 1.44642 * 105.46689 * 320.02208 * 12 11 10 14 14 C 1.46499 * 120.00136 * 270.00278 * 3 2 1 15 15 C 1.53940 * 113.74296 * 36.67641 * 14 3 2 16 16 N 1.47585 * 86.11413 * 222.04719 * 15 14 3 17 17 C 1.36939 * 134.48863 * 204.63915 * 16 15 14 18 18 H 1.08008 * 119.99749 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00278 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00074 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47139 * 59.99347 * 21 19 17 23 23 H 1.48497 * 109.47079 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46746 * 299.99938 * 21 19 17 25 25 C 1.47575 * 91.01663 * 24.63634 * 16 15 14 26 26 H 1.08998 * 109.47554 * 59.99767 * 1 2 3 27 27 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47172 * 299.99762 * 1 2 3 29 29 H 1.08997 * 109.47172 * 240.00238 * 2 1 3 30 30 H 1.08998 * 109.47554 * 120.00233 * 2 1 3 31 31 H 1.09002 * 117.51969 * 0.02562 * 8 6 4 32 32 H 1.08999 * 117.52183 * 145.15548 * 8 6 4 33 33 H 1.08999 * 110.58288 * 262.02144 * 10 9 8 34 34 H 1.09000 * 110.57733 * 24.77074 * 10 9 8 35 35 H 1.08998 * 110.36217 * 142.69303 * 11 10 9 36 36 H 1.09008 * 110.36359 * 264.89482 * 11 10 9 37 37 H 1.08996 * 110.41699 * 280.88175 * 13 12 11 38 38 H 1.09000 * 110.41554 * 158.41750 * 13 12 11 39 39 H 1.09008 * 112.94224 * 168.40357 * 14 3 2 40 40 H 1.09004 * 113.76701 * 336.34442 * 15 14 3 41 41 H 1.08997 * 113.77318 * 107.74897 * 15 14 3 42 42 H 0.96990 * 119.99846 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.77191 * 221.05684 * 25 16 15 44 44 H 1.09004 * 113.86882 * 89.67785 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6519 3.1583 1.1673 6 6 1.9923 1.3059 2.4723 7 1 2.2037 0.2366 2.4738 8 6 0.8248 1.7978 3.3334 9 6 2.2591 2.0779 3.7556 10 6 2.8447 3.4989 3.7367 11 6 3.7663 3.5318 4.9788 12 8 4.1032 2.1488 5.2271 13 6 2.8853 1.4061 4.9878 14 6 2.2624 2.0718 -1.2687 15 6 1.2459 1.7219 -2.3705 16 7 2.4043 1.6725 -3.2837 17 6 2.5694 1.8322 -4.6337 18 1 3.5528 1.7438 -5.0716 19 6 1.4729 2.1066 -5.4395 20 7 0.2744 2.2129 -4.9061 21 14 1.6982 2.3237 -7.2812 22 1 2.2668 1.0802 -7.8603 23 1 0.3833 2.6063 -7.9107 24 1 2.6236 3.4568 -7.5364 25 6 3.3129 1.3821 -2.1578 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.2381 2.6352 2.9555 32 1 0.2689 1.0522 3.9017 33 1 3.4219 3.6635 2.8269 34 1 2.0515 4.2413 3.8256 35 1 4.6663 4.1094 4.7681 36 1 3.2368 3.9540 5.8329 37 1 2.2168 1.4855 5.8451 38 1 3.1124 0.3611 4.7769 39 1 2.4269 3.1423 -1.1450 40 1 0.7577 0.7578 -2.2277 41 1 0.5449 2.5263 -2.5932 42 1 -0.4917 2.4050 -5.4691 43 1 4.2622 1.9151 -2.2105 44 1 3.4333 0.3186 -1.9512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957108805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:19 Heat of formation + Delta-G solvation = -5.126997 kcal Electronic energy + Delta-G solvation = -24558.651038 eV Core-core repulsion = 21092.535364 eV Total energy + Delta-G solvation = -3466.115673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78716 -40.48618 -39.10281 -36.67755 -36.39907 -34.10614 -31.43005 -31.20255 -29.65008 -28.35468 -26.66902 -26.00680 -24.53802 -23.96587 -23.56716 -21.45638 -20.40399 -19.59738 -18.95129 -18.31013 -17.51792 -16.91854 -16.84673 -16.72103 -16.30439 -15.88098 -15.70621 -15.30975 -14.83535 -14.50815 -14.38110 -13.87522 -13.80425 -13.69970 -13.35588 -13.27054 -13.19140 -13.17309 -12.83485 -12.65860 -12.41885 -12.39232 -12.10514 -11.98870 -11.92837 -11.84886 -11.52733 -11.37572 -10.96161 -10.87849 -10.64458 -10.32208 -9.56291 -8.97330 -7.94437 -5.28826 1.44345 1.48092 1.50002 1.54234 1.93048 2.46895 2.70591 3.07188 3.23948 3.32553 3.43803 3.62853 3.73113 3.79990 3.94398 4.03531 4.13935 4.27115 4.30342 4.41582 4.44202 4.51947 4.53246 4.62723 4.72571 4.74966 4.78595 4.81992 4.85752 4.88723 4.92638 4.98997 5.02559 5.10550 5.16875 5.26542 5.41202 5.44467 5.49638 5.74057 5.85980 5.88047 6.52841 6.87409 7.23786 7.55283 8.49238 9.22213 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031918 B = 0.003411 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.041739 B = 8207.280747 C = 8584.315221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.534 3.466 5 O -0.579 6.579 6 C -0.176 4.176 7 H 0.155 0.845 8 C -0.111 4.111 9 C -0.139 4.139 10 C -0.133 4.133 11 C 0.048 3.952 12 O -0.400 6.400 13 C 0.084 3.916 14 C 0.115 3.885 15 C 0.162 3.838 16 N -0.637 5.637 17 C -0.240 4.240 18 H 0.084 0.916 19 C -0.063 4.063 20 N -0.951 5.951 21 Si 0.982 3.018 22 H -0.275 1.275 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.114 3.886 26 H 0.037 0.963 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.250 0.750 43 H 0.046 0.954 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 -5.857 21.761 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.322 5.322 4 C 0.325 3.675 5 O -0.460 6.460 6 C -0.196 4.196 7 H 0.172 0.828 8 C -0.148 4.148 9 C -0.140 4.140 10 C -0.170 4.170 11 C -0.029 4.029 12 O -0.319 6.319 13 C 0.008 3.992 14 C 0.010 3.990 15 C 0.037 3.963 16 N -0.364 5.364 17 C -0.369 4.369 18 H 0.102 0.898 19 C -0.256 4.256 20 N -0.599 5.599 21 Si 0.810 3.190 22 H -0.200 1.200 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.013 4.013 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.163 0.837 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.607 -5.302 21.487 22.140 hybrid contribution -0.225 0.524 -1.782 1.870 sum 0.382 -4.778 19.706 20.280 Atomic orbital electron populations 1.22281 0.95042 1.03388 1.02038 1.21793 0.95276 0.80790 1.04161 1.48127 1.64298 1.15145 1.04598 1.20411 0.76024 0.85708 0.85395 1.90572 1.47925 1.20106 1.87413 1.22307 1.08214 1.01076 0.88024 0.82770 1.23020 0.89177 1.03372 0.99225 1.22235 1.00102 0.96598 0.95038 1.22624 0.99788 0.94865 0.99761 1.23533 0.99403 0.83465 0.96454 1.89122 1.33304 1.19081 1.90384 1.22987 0.85694 0.96440 0.94072 1.23226 0.97428 0.96765 0.81562 1.22613 0.90812 0.98446 0.84470 1.45980 1.05552 1.82550 1.02312 1.19352 0.94347 1.41400 0.81754 0.89805 1.25651 0.94983 1.02301 1.02677 1.69994 0.98677 1.55721 1.35518 0.85107 0.76442 0.78266 0.79216 1.20041 1.21808 1.20403 1.23061 0.94332 0.98151 0.85716 0.94435 0.89349 0.91355 0.91095 0.86851 0.89244 0.83699 0.90178 0.90685 0.89303 0.90528 0.89153 0.87398 0.89428 0.93459 0.94707 0.94100 0.93550 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 9.91 71.98 0.71 -3.08 16 2 C 0.10 2.38 5.10 86.38 0.44 2.82 16 3 N -0.59 -18.49 2.69 -803.57 -2.16 -20.66 16 4 C 0.53 16.34 7.46 87.65 0.65 17.00 16 5 O -0.58 -22.29 12.83 -3.01 -0.04 -22.32 16 6 C -0.18 -3.50 5.17 -11.77 -0.06 -3.56 16 7 H 0.15 2.13 6.44 -2.39 -0.02 2.12 16 8 C -0.11 -1.71 10.01 30.37 0.30 -1.40 16 9 C -0.14 -2.65 2.50 -52.30 -0.13 -2.78 16 10 C -0.13 -3.15 5.96 31.41 0.19 -2.96 16 11 C 0.05 0.95 7.65 72.56 0.56 1.51 16 12 O -0.40 -8.95 11.65 -148.98 -1.74 -10.69 16 13 C 0.08 1.31 7.44 72.21 0.54 1.85 16 14 C 0.12 4.72 4.39 46.75 0.21 4.93 16 15 C 0.16 7.80 6.33 86.48 0.55 8.34 16 16 N -0.64 -33.53 3.70 -717.43 -2.65 -36.19 16 17 C -0.24 -13.76 10.70 84.03 0.90 -12.86 16 18 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 19 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 20 N -0.95 -57.53 11.39 21.65 0.25 -57.28 16 21 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 C 0.11 4.80 8.46 86.48 0.73 5.53 16 26 H 0.04 1.12 5.85 -2.39 -0.01 1.11 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.87 6.36 -2.39 -0.02 1.86 16 30 H 0.11 1.76 6.00 -2.39 -0.01 1.75 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 2.52 5.47 -2.39 -0.01 2.51 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 1.30 8.12 -2.39 -0.02 1.29 16 39 H 0.09 4.05 7.25 -2.38 -0.02 4.03 16 40 H 0.05 2.18 5.01 -2.39 -0.01 2.17 16 41 H 0.03 1.93 7.16 -2.39 -0.02 1.91 16 42 H 0.25 14.69 8.31 -92.72 -0.77 13.92 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 44 H 0.06 2.20 6.98 -2.39 -0.02 2.19 16 Total: -1.00 -73.65 343.76 2.73 -70.92 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.00 Total: 16.00 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.05 Total: 12.19 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -4.57 Total: -114.13 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.77 Total: -33.01 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -73.65 2.73 -70.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957108805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.793 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds