Wall clock time and date at job start Tue Mar 31 2020 07:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47249 * 2 1 4 4 C 1.34777 * 119.99808 * 270.00521 * 3 2 1 5 5 O 1.21285 * 120.00096 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.99961 * 359.97438 * 4 3 2 7 7 H 1.09000 * 115.56499 * 54.21800 * 6 4 3 8 8 C 1.53184 * 117.52309 * 200.07397 * 6 4 3 9 9 C 1.52121 * 59.77444 * 107.42604 * 8 6 4 10 10 C 1.54044 * 121.47637 * 249.14212 * 9 8 6 11 11 C 1.55177 * 101.82896 * 195.70319 * 10 9 8 12 12 O 1.44457 * 103.63581 * 36.33021 * 11 10 9 13 13 C 1.43993 * 107.04388 * 320.42948 * 12 11 10 14 14 C 1.46499 * 120.00436 * 90.00188 * 3 2 1 15 15 C 1.53502 * 114.20155 * 300.00440 * 14 3 2 16 16 N 1.47060 * 87.98644 * 87.71608 * 15 14 3 17 17 C 1.36939 * 136.05773 * 207.08706 * 16 15 14 18 18 H 1.08001 * 119.99714 * 6.43196 * 17 16 15 19 19 C 1.38806 * 120.00177 * 186.16331 * 17 16 15 20 20 N 1.31619 * 120.00212 * 355.33671 * 19 17 16 21 21 Si 1.86807 * 120.00148 * 175.33398 * 19 17 16 22 22 H 1.48505 * 109.46772 * 94.97833 * 21 19 17 23 23 H 1.48497 * 109.47121 * 214.97661 * 21 19 17 24 24 H 1.48495 * 109.46879 * 334.97966 * 21 19 17 25 25 C 1.47066 * 87.88816 * 27.33946 * 16 15 14 26 26 H 1.08998 * 109.46681 * 299.99790 * 1 2 3 27 27 H 1.08994 * 109.47199 * 60.00017 * 1 2 3 28 28 H 1.09005 * 109.46896 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47164 * 240.00166 * 2 1 3 30 30 H 1.08998 * 109.47686 * 120.00033 * 2 1 3 31 31 H 1.08992 * 117.52320 * 214.85314 * 8 6 4 32 32 H 1.09002 * 117.52112 * 359.97438 * 8 6 4 33 33 H 1.08992 * 110.95581 * 313.84009 * 10 9 8 34 34 H 1.09000 * 110.95257 * 77.56859 * 10 9 8 35 35 H 1.09000 * 110.59565 * 277.79347 * 11 10 9 36 36 H 1.09000 * 110.59235 * 154.86984 * 11 10 9 37 37 H 1.08994 * 109.97293 * 266.92885 * 13 12 11 38 38 H 1.09000 * 109.96608 * 145.66567 * 13 12 11 39 39 H 1.08999 * 113.28302 * 166.93701 * 14 3 2 40 40 H 1.09000 * 113.46793 * 332.93093 * 15 14 3 41 41 H 1.09001 * 113.51472 * 202.50527 * 15 14 3 42 42 H 0.96997 * 120.00539 * 179.97438 * 20 19 17 43 43 H 1.08998 * 113.46656 * 87.43949 * 25 16 15 44 44 H 1.08994 * 113.46915 * 217.88213 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.6468 3.1602 -1.1673 6 6 1.9921 1.3059 -2.4723 7 1 0.9959 0.8803 -2.5923 8 6 2.6820 1.8588 -3.7233 9 6 3.1574 0.5554 -3.0994 10 6 4.5217 0.4531 -2.3913 11 6 4.7231 -1.0833 -2.3092 12 8 4.1584 -1.5675 -3.5476 13 6 2.9691 -0.7958 -3.7994 14 6 2.2626 2.0719 1.2687 15 6 1.0223 2.2011 2.1638 16 7 1.3573 0.8856 2.7293 17 6 0.6649 -0.1439 3.3089 18 1 -0.4145 -0.1205 3.3364 19 6 1.3500 -1.2199 3.8561 20 7 2.6586 -1.2962 3.7372 21 14 0.4148 -2.5599 4.7614 22 1 0.1218 -3.6765 3.8271 23 1 1.2385 -3.0623 5.8902 24 1 -0.8592 -2.0063 5.2861 25 6 2.7642 1.1647 2.4043 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.1394 1.7972 -4.6665 32 1 3.3168 2.7366 -3.6021 33 1 5.3064 0.9179 -2.9881 34 1 4.4780 0.8944 -1.3956 35 1 4.1850 -1.4955 -1.4556 36 1 5.7835 -1.3283 -2.2497 37 1 2.0988 -1.3089 -3.3904 38 1 2.8432 -0.6452 -4.8716 39 1 2.8293 2.9959 1.1540 40 1 0.0847 2.2087 1.6079 41 1 1.0903 3.0143 2.8864 42 1 3.1374 -2.0479 4.1199 43 1 3.2923 1.7048 3.1901 44 1 3.3106 0.2893 2.0533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957108807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:26 Heat of formation + Delta-G solvation = 16.727834 kcal Electronic energy + Delta-G solvation = -25601.056973 eV Core-core repulsion = 22135.888997 eV Total energy + Delta-G solvation = -3465.167977 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65351 -39.27882 -37.80328 -35.67692 -34.44045 -32.23322 -30.34524 -29.93044 -27.83929 -27.32960 -24.88343 -24.64812 -23.14151 -22.80782 -22.09015 -20.27706 -19.30708 -18.00223 -17.05905 -16.65214 -16.47305 -16.17474 -15.51725 -15.08748 -14.86237 -14.47254 -13.90792 -13.83458 -13.60584 -13.15217 -12.90564 -12.82602 -12.63520 -12.56680 -12.26472 -12.08721 -11.52101 -11.47696 -11.37582 -11.10346 -11.06214 -10.93398 -10.62329 -10.47394 -10.32605 -10.12268 -10.04439 -9.88757 -9.69247 -9.43382 -9.38978 -8.86946 -8.02027 -6.95111 -5.86984 -3.18054 2.74424 3.28949 3.32940 3.39659 3.40745 3.68744 3.86002 4.25467 4.38726 4.56845 4.67675 4.83354 4.99849 5.16399 5.20537 5.36158 5.40209 5.43065 5.47912 5.53641 5.60957 5.62435 5.68098 5.75889 5.89344 5.93667 5.95836 5.98844 6.02825 6.12733 6.19338 6.34729 6.39058 6.51776 6.68498 6.75409 6.93525 6.98279 7.10729 7.25572 7.46308 7.86143 7.97997 8.56110 8.94761 9.61311 10.55368 11.30405 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.005400 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.554909 B = 5184.201197 C = 5915.391028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.108 3.892 3 N -0.565 5.565 4 C 0.542 3.458 5 O -0.553 6.553 6 C -0.163 4.163 7 H 0.127 0.873 8 C -0.129 4.129 9 C -0.143 4.143 10 C -0.121 4.121 11 C 0.049 3.951 12 O -0.378 6.378 13 C 0.085 3.915 14 C 0.081 3.919 15 C 0.102 3.898 16 N -0.603 5.603 17 C -0.212 4.212 18 H 0.080 0.920 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.905 3.095 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.149 3.851 26 H 0.076 0.924 27 H 0.033 0.967 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.254 0.746 43 H 0.038 0.962 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 2.342 -13.633 13.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.014 4.014 3 N -0.295 5.295 4 C 0.330 3.670 5 O -0.432 6.432 6 C -0.184 4.184 7 H 0.145 0.855 8 C -0.166 4.166 9 C -0.144 4.144 10 C -0.159 4.159 11 C -0.027 4.027 12 O -0.297 6.297 13 C 0.009 3.991 14 C -0.024 4.024 15 C -0.025 4.025 16 N -0.330 5.330 17 C -0.340 4.340 18 H 0.098 0.902 19 C -0.201 4.201 20 N -0.564 5.564 21 Si 0.735 3.265 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.023 3.977 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.994 2.414 -13.555 13.805 hybrid contribution -0.782 -0.605 0.998 1.405 sum 0.212 1.809 -12.558 12.689 Atomic orbital electron populations 1.22138 0.96238 1.01701 1.01559 1.21643 0.94550 0.81499 1.03732 1.47430 1.63263 1.14401 1.04374 1.19492 0.77359 0.85899 0.84289 1.90644 1.47249 1.17936 1.87414 1.22306 0.98524 1.04286 0.93260 0.85517 1.22932 1.02058 0.96309 0.95291 1.22233 0.95150 0.94651 1.02393 1.22628 0.94622 0.97307 1.01331 1.23598 0.99556 0.92288 0.87253 1.88902 1.40450 1.59185 1.41125 1.22535 0.88704 0.88051 0.99858 1.22738 0.99336 0.96682 0.83675 1.22912 0.96235 0.89781 0.93554 1.45688 1.03377 1.12513 1.71385 1.18833 0.89910 0.95084 1.30143 0.90243 1.24763 0.95599 0.98887 1.00852 1.69817 1.05791 1.31618 1.49166 0.86214 0.78739 0.81885 0.79634 1.21602 1.21675 1.20699 1.22446 0.88963 0.95725 0.90602 0.90501 0.94807 0.92359 0.92560 0.86429 0.87811 0.87313 0.89907 0.89742 0.91349 0.88789 0.91691 0.89442 0.88531 0.93812 0.94194 0.93580 0.94434 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.93 37.16 0.37 -2.23 16 2 C 0.11 1.86 5.17 -4.04 -0.02 1.84 16 3 N -0.57 -9.89 2.73 -165.73 -0.45 -10.34 16 4 C 0.54 9.09 6.01 -10.98 -0.07 9.03 16 5 O -0.55 -10.81 15.97 5.55 0.09 -10.72 16 6 C -0.16 -2.13 4.29 -92.12 -0.40 -2.53 16 7 H 0.13 1.50 7.39 -51.93 -0.38 1.11 16 8 C -0.13 -1.44 9.82 -27.08 -0.27 -1.71 16 9 C -0.14 -1.70 2.19 -154.68 -0.34 -2.04 16 10 C -0.12 -1.52 6.74 -25.03 -0.17 -1.69 16 11 C 0.05 0.61 7.73 38.31 0.30 0.90 16 12 O -0.38 -4.99 11.53 -35.23 -0.41 -5.40 16 13 C 0.09 0.95 7.50 37.33 0.28 1.23 16 14 C 0.08 1.54 4.68 -67.67 -0.32 1.22 16 15 C 0.10 2.04 7.65 -8.51 -0.07 1.98 16 16 N -0.60 -13.97 2.07 -184.62 -0.38 -14.35 16 17 C -0.21 -5.40 9.63 -15.06 -0.14 -5.54 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 20 N -0.92 -25.16 11.61 55.49 0.64 -24.52 16 21 Si 0.90 20.96 29.56 -169.99 -5.02 15.93 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 C 0.15 3.27 6.36 -8.37 -0.05 3.22 16 26 H 0.08 1.45 4.80 -51.93 -0.25 1.20 16 27 H 0.03 0.48 7.42 -51.93 -0.39 0.10 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.86 6.67 -51.93 -0.35 0.51 16 30 H 0.12 2.51 5.41 -51.93 -0.28 2.23 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.11 1.35 7.82 -51.93 -0.41 0.94 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.22 6.93 -51.93 -0.36 0.86 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.82 7.29 -51.93 -0.38 1.44 16 40 H 0.04 0.86 6.66 -51.93 -0.35 0.51 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.75 6.44 -51.93 -0.33 1.42 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -28.93 344.24 -8.15 -37.09 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.82 Total: 3.65 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.99 Total: 3.49 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.19 Total: -49.22 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.32 Total: -16.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.93 -8.15 -37.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957108807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.813 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds