Wall clock time and date at job start Tue Mar 31 2020 07:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47249 * 2 1 4 4 C 1.34777 * 119.99808 * 270.00521 * 3 2 1 5 5 O 1.21285 * 120.00096 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.99961 * 359.97438 * 4 3 2 7 7 H 1.09000 * 115.56499 * 54.21800 * 6 4 3 8 8 C 1.53184 * 117.52309 * 200.07397 * 6 4 3 9 9 C 1.52121 * 59.77444 * 107.42604 * 8 6 4 10 10 C 1.54044 * 121.47637 * 249.14212 * 9 8 6 11 11 C 1.55177 * 101.82896 * 195.70319 * 10 9 8 12 12 O 1.44457 * 103.63581 * 36.33021 * 11 10 9 13 13 C 1.43993 * 107.04388 * 320.42948 * 12 11 10 14 14 C 1.46499 * 120.00436 * 90.00188 * 3 2 1 15 15 C 1.53502 * 114.20155 * 300.00440 * 14 3 2 16 16 N 1.47060 * 87.98644 * 87.71608 * 15 14 3 17 17 C 1.36939 * 136.05773 * 207.08706 * 16 15 14 18 18 H 1.08001 * 119.99714 * 6.43196 * 17 16 15 19 19 C 1.38806 * 120.00177 * 186.16331 * 17 16 15 20 20 N 1.31619 * 120.00212 * 355.33671 * 19 17 16 21 21 Si 1.86807 * 120.00148 * 175.33398 * 19 17 16 22 22 H 1.48505 * 109.46772 * 94.97833 * 21 19 17 23 23 H 1.48497 * 109.47121 * 214.97661 * 21 19 17 24 24 H 1.48495 * 109.46879 * 334.97966 * 21 19 17 25 25 C 1.47066 * 87.88816 * 27.33946 * 16 15 14 26 26 H 1.08998 * 109.46681 * 299.99790 * 1 2 3 27 27 H 1.08994 * 109.47199 * 60.00017 * 1 2 3 28 28 H 1.09005 * 109.46896 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47164 * 240.00166 * 2 1 3 30 30 H 1.08998 * 109.47686 * 120.00033 * 2 1 3 31 31 H 1.08992 * 117.52320 * 214.85314 * 8 6 4 32 32 H 1.09002 * 117.52112 * 359.97438 * 8 6 4 33 33 H 1.08992 * 110.95581 * 313.84009 * 10 9 8 34 34 H 1.09000 * 110.95257 * 77.56859 * 10 9 8 35 35 H 1.09000 * 110.59565 * 277.79347 * 11 10 9 36 36 H 1.09000 * 110.59235 * 154.86984 * 11 10 9 37 37 H 1.08994 * 109.97293 * 266.92885 * 13 12 11 38 38 H 1.09000 * 109.96608 * 145.66567 * 13 12 11 39 39 H 1.08999 * 113.28302 * 166.93701 * 14 3 2 40 40 H 1.09000 * 113.46793 * 332.93093 * 15 14 3 41 41 H 1.09001 * 113.51472 * 202.50527 * 15 14 3 42 42 H 0.96997 * 120.00539 * 179.97438 * 20 19 17 43 43 H 1.08998 * 113.46656 * 87.43949 * 25 16 15 44 44 H 1.08994 * 113.46915 * 217.88213 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.6468 3.1602 -1.1673 6 6 1.9921 1.3059 -2.4723 7 1 0.9959 0.8803 -2.5923 8 6 2.6820 1.8588 -3.7233 9 6 3.1574 0.5554 -3.0994 10 6 4.5217 0.4531 -2.3913 11 6 4.7231 -1.0833 -2.3092 12 8 4.1584 -1.5675 -3.5476 13 6 2.9691 -0.7958 -3.7994 14 6 2.2626 2.0719 1.2687 15 6 1.0223 2.2011 2.1638 16 7 1.3573 0.8856 2.7293 17 6 0.6649 -0.1439 3.3089 18 1 -0.4145 -0.1205 3.3364 19 6 1.3500 -1.2199 3.8561 20 7 2.6586 -1.2962 3.7372 21 14 0.4148 -2.5599 4.7614 22 1 0.1218 -3.6765 3.8271 23 1 1.2385 -3.0623 5.8902 24 1 -0.8592 -2.0063 5.2861 25 6 2.7642 1.1647 2.4043 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.1394 1.7972 -4.6665 32 1 3.3168 2.7366 -3.6021 33 1 5.3064 0.9179 -2.9881 34 1 4.4780 0.8944 -1.3956 35 1 4.1850 -1.4955 -1.4556 36 1 5.7835 -1.3283 -2.2497 37 1 2.0988 -1.3089 -3.3904 38 1 2.8432 -0.6452 -4.8716 39 1 2.8293 2.9959 1.1540 40 1 0.0847 2.2087 1.6079 41 1 1.0903 3.0143 2.8864 42 1 3.1374 -2.0479 4.1199 43 1 3.2923 1.7048 3.1901 44 1 3.3106 0.2893 2.0533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957108807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:25 Heat of formation + Delta-G solvation = 0.369290 kcal Electronic energy + Delta-G solvation = -25601.766333 eV Core-core repulsion = 22135.888997 eV Total energy + Delta-G solvation = -3465.877336 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88261 -40.57616 -39.23018 -36.75194 -35.95450 -34.14817 -31.44937 -31.29113 -29.44326 -28.45862 -26.58305 -26.04311 -24.67886 -23.82134 -23.51746 -21.48503 -20.57494 -19.45269 -18.69840 -18.19633 -17.51231 -17.25722 -16.93846 -16.61956 -16.01882 -15.86484 -15.61849 -15.32827 -14.76523 -14.52086 -14.48288 -14.21804 -13.90016 -13.55375 -13.47019 -13.36386 -13.23658 -12.95948 -12.80033 -12.67668 -12.45865 -12.28599 -12.03841 -11.97705 -11.73577 -11.67677 -11.40439 -11.21569 -11.13853 -10.90482 -10.68499 -10.52692 -9.51739 -8.86938 -7.86928 -5.17869 1.47356 1.47442 1.50015 1.57045 1.96501 2.49050 2.67279 2.93608 3.22235 3.34258 3.48637 3.61108 3.67481 3.77570 3.86356 3.97768 4.18584 4.23456 4.42060 4.42540 4.47706 4.53014 4.59319 4.70349 4.73762 4.74689 4.77975 4.82191 4.84241 4.89075 4.93330 4.98080 5.02923 5.05811 5.13023 5.23935 5.39897 5.48761 5.54573 5.76783 5.82758 5.92125 6.57898 6.94317 7.18900 7.64053 8.63556 9.30428 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.005400 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.554909 B = 5184.201197 C = 5915.391028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.119 3.881 3 N -0.568 5.568 4 C 0.542 3.458 5 O -0.583 6.583 6 C -0.175 4.175 7 H 0.147 0.853 8 C -0.112 4.112 9 C -0.139 4.139 10 C -0.122 4.122 11 C 0.051 3.949 12 O -0.392 6.392 13 C 0.084 3.916 14 C 0.100 3.900 15 C 0.107 3.893 16 N -0.617 5.617 17 C -0.207 4.207 18 H 0.082 0.918 19 C -0.055 4.055 20 N -0.946 5.946 21 Si 0.963 3.037 22 H -0.286 1.286 23 H -0.301 1.301 24 H -0.273 1.273 25 C 0.152 3.848 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.247 0.753 43 H 0.027 0.973 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 2.364 -15.845 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.003 4.003 3 N -0.297 5.297 4 C 0.332 3.668 5 O -0.464 6.464 6 C -0.196 4.196 7 H 0.165 0.835 8 C -0.149 4.149 9 C -0.140 4.140 10 C -0.160 4.160 11 C -0.025 4.025 12 O -0.311 6.311 13 C 0.008 3.992 14 C -0.006 4.006 15 C -0.019 4.019 16 N -0.344 5.344 17 C -0.335 4.335 18 H 0.100 0.900 19 C -0.248 4.248 20 N -0.595 5.595 21 Si 0.793 3.207 22 H -0.213 1.213 23 H -0.228 1.228 24 H -0.198 1.198 25 C 0.025 3.975 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.297 2.451 -15.786 15.977 hybrid contribution -0.366 -0.546 1.660 1.785 sum -0.662 1.905 -14.126 14.269 Atomic orbital electron populations 1.22046 0.95230 1.02081 1.01506 1.21456 0.95176 0.81014 1.02638 1.47475 1.63549 1.14513 1.04202 1.20108 0.76058 0.85613 0.85034 1.90627 1.48446 1.19410 1.87902 1.22326 0.99976 1.05462 0.91811 0.83517 1.23059 1.01027 0.95155 0.95615 1.22257 0.93927 0.95702 1.02118 1.22600 0.95823 0.97306 1.00264 1.23569 1.00174 0.92048 0.86728 1.88891 1.41357 1.59825 1.41050 1.22718 0.88124 0.87058 1.01337 1.22436 0.98351 0.95969 0.83831 1.22976 0.96878 0.88459 0.93619 1.45799 1.03912 1.13473 1.71171 1.19055 0.90171 0.95487 1.28808 0.90035 1.25391 0.96270 1.00980 1.02206 1.69980 1.07023 1.32039 1.50445 0.85293 0.77668 0.79673 0.78107 1.21312 1.22807 1.19836 1.22332 0.88384 0.95206 0.91548 0.93044 0.92210 0.91774 0.90453 0.90686 0.84358 0.88606 0.88890 0.92232 0.92811 0.87541 0.91035 0.86865 0.88114 0.93052 0.93188 0.94427 0.95523 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 9.93 71.98 0.71 -3.99 16 2 C 0.12 4.06 5.17 86.38 0.45 4.50 16 3 N -0.57 -19.62 2.73 -796.63 -2.17 -21.80 16 4 C 0.54 17.51 6.01 87.66 0.53 18.04 16 5 O -0.58 -22.29 15.97 -3.05 -0.05 -22.34 16 6 C -0.18 -4.10 4.29 -11.76 -0.05 -4.15 16 7 H 0.15 2.87 7.39 -2.39 -0.02 2.86 16 8 C -0.11 -2.13 9.82 30.37 0.30 -1.83 16 9 C -0.14 -2.94 2.19 -52.29 -0.11 -3.05 16 10 C -0.12 -2.93 6.74 31.69 0.21 -2.72 16 11 C 0.05 1.21 7.73 72.73 0.56 1.78 16 12 O -0.39 -9.54 11.53 -148.98 -1.72 -11.26 16 13 C 0.08 1.59 7.50 72.09 0.54 2.13 16 14 C 0.10 3.83 4.68 45.55 0.21 4.04 16 15 C 0.11 4.24 7.65 83.18 0.64 4.87 16 16 N -0.62 -28.95 2.07 -738.00 -1.53 -30.48 16 17 C -0.21 -10.59 9.63 84.03 0.81 -9.78 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.05 -2.90 5.50 84.86 0.47 -2.44 16 20 N -0.95 -53.44 11.61 21.65 0.25 -53.19 16 21 Si 0.96 43.49 29.56 68.60 2.03 45.52 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 C 0.15 6.89 6.36 83.27 0.53 7.42 16 26 H 0.05 1.88 4.80 -2.39 -0.01 1.87 16 27 H 0.06 1.54 7.42 -2.39 -0.02 1.52 16 28 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.08 2.27 6.67 -2.39 -0.02 2.26 16 30 H 0.07 3.28 5.41 -2.39 -0.01 3.27 16 31 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 2.14 7.82 -2.39 -0.02 2.12 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.73 6.93 -2.39 -0.02 1.71 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.10 3.81 7.29 -2.39 -0.02 3.79 16 40 H 0.05 1.96 6.66 -2.39 -0.02 1.95 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.05 2.43 6.44 -2.39 -0.02 2.41 16 Total: -1.00 -62.85 344.24 3.60 -59.25 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.99 Total: 19.48 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 5.79 Total: 14.81 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -3.45 Total: -105.47 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.77 Total: -33.60 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -62.85 3.60 -59.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957108807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.622 kcal (2) G-P(sol) polarization free energy of solvation -62.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds