Wall clock time and date at job start Tue Mar 31 2020 06:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.45065 * 2 1 4 4 C 1.53048 * 109.46175 * 240.03426 * 2 1 3 5 5 C 1.53191 * 109.31185 * 178.61188 * 4 2 1 6 6 N 1.46921 * 108.77594 * 54.63791 * 5 4 2 7 7 C 1.36941 * 120.63168 * 126.41201 * 6 5 4 8 8 H 1.08001 * 119.99882 * 331.81008 * 7 6 5 9 9 C 1.38808 * 120.00109 * 151.80814 * 7 6 5 10 10 N 1.31616 * 120.00320 * 343.08312 * 9 7 6 11 11 Si 1.86804 * 119.99981 * 163.07726 * 9 7 6 12 12 H 1.48497 * 109.46834 * 90.00235 * 11 9 7 13 13 H 1.48496 * 109.47167 * 210.00281 * 11 9 7 14 14 H 1.48503 * 109.47299 * 330.00305 * 11 9 7 15 15 C 1.46923 * 118.74142 * 306.39016 * 6 5 4 16 16 C 1.53039 * 109.46224 * 119.96933 * 2 1 3 17 17 H 1.09007 * 109.52495 * 301.34972 * 16 2 1 18 18 N 1.46496 * 109.50092 * 61.43375 * 16 2 1 19 19 C 1.34781 * 120.00008 * 204.83890 * 18 16 2 20 20 O 1.21738 * 120.00082 * 359.72650 * 19 18 16 21 21 C 1.41796 * 119.99944 * 179.97438 * 19 18 16 22 22 C 1.33448 * 118.78676 * 179.73488 * 21 19 18 23 23 O 1.34358 * 123.07872 * 180.11443 * 22 21 19 24 24 C 1.45344 * 117.54691 * 344.22032 * 23 22 21 25 25 C 1.53480 * 108.26417 * 47.22466 * 24 23 22 26 26 C 1.50424 * 118.78616 * 0.02562 * 21 19 18 27 27 H 1.08999 * 109.47340 * 300.02744 * 1 2 3 28 28 H 1.08992 * 109.47397 * 60.03459 * 1 2 3 29 29 H 1.09005 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.49405 * 58.65962 * 4 2 1 31 31 H 1.08995 * 109.52402 * 298.58045 * 4 2 1 32 32 H 1.09003 * 109.58714 * 294.84687 * 5 4 2 33 33 H 1.09002 * 109.70001 * 174.49344 * 5 4 2 34 34 H 0.96998 * 120.00579 * 180.02562 * 10 9 7 35 35 H 1.09006 * 109.58766 * 293.82425 * 15 6 5 36 36 H 1.09001 * 109.59091 * 173.39650 * 15 6 5 37 37 H 0.97004 * 120.00172 * 24.84150 * 18 16 2 38 38 H 1.07995 * 118.46433 * 0.39503 * 22 21 19 39 39 H 1.08999 * 109.70696 * 287.53096 * 24 23 22 40 40 H 1.09007 * 109.70656 * 166.91796 * 24 23 22 41 41 H 1.09003 * 109.70670 * 177.60687 * 25 24 23 42 42 H 1.08995 * 109.74359 * 57.01119 * 25 24 23 43 43 H 1.09002 * 109.45164 * 282.35348 * 26 21 19 44 44 H 1.09002 * 109.45564 * 42.29639 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0679 -1.2487 -0.0001 7 6 4.9765 -2.2733 -0.0001 8 1 5.0044 -2.9703 -0.8246 9 6 5.8617 -2.4159 1.0595 10 7 6.0662 -1.4122 1.8859 11 14 6.7628 -4.0326 1.3127 12 1 8.0470 -4.0054 0.5677 13 1 7.0339 -4.2268 2.7597 14 1 5.9236 -5.1507 0.8120 15 6 3.5714 -0.6886 1.2642 16 6 2.0399 -0.7208 1.2500 17 1 1.6573 -0.2213 2.1402 18 7 1.5802 -2.1117 1.2342 19 6 1.4549 -2.7932 2.3902 20 8 1.7283 -2.2545 3.4471 21 6 1.0094 -4.1393 2.3750 22 6 0.8992 -4.7929 3.5332 23 8 0.4883 -6.0692 3.6187 24 6 -0.1738 -6.6415 2.4583 25 6 0.6587 -6.3032 1.2140 26 6 0.6849 -4.7799 1.0532 27 1 -0.3634 0.5142 0.8897 28 1 -0.3634 0.5132 -0.8902 29 1 -0.3633 -1.0277 0.0005 30 1 1.6572 -0.2207 -2.1399 31 1 1.6979 -1.7556 -1.2389 32 1 3.9143 0.3410 -1.3674 33 1 3.9438 -1.2829 -2.0986 34 1 6.6851 -1.5117 2.6262 35 1 3.9143 0.3410 1.3673 36 1 3.9418 -1.2845 2.0984 37 1 1.3661 -2.5422 0.3917 38 1 1.1476 -4.2701 4.4449 39 1 -1.1728 -6.2170 2.3586 40 1 -0.2432 -7.7235 2.5710 41 1 0.2051 -6.7581 0.3334 42 1 1.6751 -6.6769 1.3383 43 1 -0.2909 -4.4343 0.7121 44 1 1.4437 -4.5050 0.3205 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965396832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:51 Heat of formation + Delta-G solvation = -45.798623 kcal Electronic energy + Delta-G solvation = -25589.956502 eV Core-core repulsion = 22122.077175 eV Total energy + Delta-G solvation = -3467.879327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41015 -39.14298 -37.43876 -34.26128 -33.96592 -32.55024 -31.48730 -30.95199 -29.02739 -27.27401 -25.71227 -24.38871 -23.80526 -22.16682 -21.14398 -21.01078 -18.88276 -18.51611 -17.72760 -16.65784 -16.16170 -15.62920 -15.05221 -14.88809 -14.56656 -14.32415 -13.87601 -13.82156 -13.61518 -13.35049 -13.24009 -13.03854 -12.97896 -12.50511 -12.42544 -11.87763 -11.54982 -11.37249 -11.24680 -11.01891 -10.97227 -10.87820 -10.67705 -10.63489 -10.46906 -10.19200 -9.87681 -9.63621 -9.44389 -9.18847 -8.41191 -8.40325 -8.10215 -6.58215 -5.71554 -3.14542 1.72494 3.25261 3.40648 3.47962 3.49525 3.90630 4.12813 4.54531 4.62349 4.68388 4.87124 5.13360 5.24495 5.25205 5.28764 5.37210 5.39686 5.47561 5.57411 5.60271 5.64530 5.88033 5.92234 5.97753 6.02379 6.05665 6.17998 6.19666 6.34757 6.38403 6.42918 6.49200 6.61277 6.73773 6.79334 6.93892 7.10490 7.34077 7.49918 7.74941 7.86399 8.29608 8.52597 8.99535 9.27092 9.91537 10.47438 11.36252 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.007546 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.639133 B = 3709.495873 C = 5124.051860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.586 5.586 7 C -0.253 4.253 8 H 0.062 0.938 9 C 0.007 3.993 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.161 3.839 16 C 0.126 3.874 17 H 0.074 0.926 18 N -0.695 5.695 19 C 0.568 3.432 20 O -0.567 6.567 21 C -0.300 4.300 22 C 0.142 3.858 23 O -0.315 6.315 24 C 0.054 3.946 25 C -0.157 4.157 26 C -0.074 4.074 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.052 0.948 34 H 0.253 0.747 35 H 0.023 0.977 36 H 0.097 0.903 37 H 0.393 0.607 38 H 0.179 0.821 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.954 -5.726 -3.426 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.167 4.167 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.382 4.382 8 H 0.079 0.921 9 C -0.192 4.192 10 N -0.541 5.541 11 Si 0.726 3.274 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.034 3.966 16 C 0.020 3.980 17 H 0.092 0.908 18 N -0.346 5.346 19 C 0.359 3.641 20 O -0.449 6.449 21 C -0.304 4.304 22 C 0.074 3.926 23 O -0.226 6.226 24 C -0.020 4.020 25 C -0.195 4.195 26 C -0.111 4.111 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.115 0.885 37 H 0.229 0.771 38 H 0.196 0.804 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.618 -5.477 -2.409 15.795 hybrid contribution 0.502 -0.886 -0.552 1.159 sum -14.116 -6.363 -2.961 15.764 Atomic orbital electron populations 1.21837 0.96097 1.01273 1.00842 1.21312 0.94520 0.99861 0.95642 0.90558 1.22072 0.99266 0.99318 0.96087 1.20923 0.90688 0.96494 0.90323 1.43959 1.48219 1.39579 0.99131 1.19032 1.09707 1.02965 1.06528 0.92059 1.24997 0.97185 0.97111 0.99878 1.69993 1.37150 1.28958 1.17975 0.86401 0.79624 0.84126 0.77220 1.21524 1.21553 1.20645 1.21200 0.86865 0.97605 0.90916 1.21732 0.98762 0.80905 0.96604 0.90786 1.45721 1.66826 1.13823 1.08212 1.16439 0.77717 0.85755 0.84235 1.90771 1.52688 1.70750 1.30730 1.20127 1.16856 0.97816 0.95623 1.22904 0.88624 0.82169 0.98859 1.86240 1.71198 1.25088 1.40116 1.23486 0.95193 0.98995 0.84332 1.22181 1.01907 0.97101 0.98273 1.20267 1.02019 0.93908 0.94911 0.93137 0.93266 0.93122 0.92895 0.92868 0.96518 0.92919 0.93637 0.95914 0.88478 0.77138 0.80439 0.91168 0.87750 0.89802 0.90195 0.91171 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.05 37.16 0.34 -1.55 16 2 C -0.09 -1.51 2.48 -90.58 -0.22 -1.73 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.13 -2.05 5.20 -26.61 -0.14 -2.19 16 5 C 0.14 2.86 6.52 -3.71 -0.02 2.84 16 6 N -0.59 -14.35 2.91 -172.32 -0.50 -14.85 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 8 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 9 C 0.01 0.21 4.92 -17.43 -0.09 0.13 16 10 N -0.90 -26.92 11.20 55.49 0.62 -26.30 16 11 Si 0.90 22.45 29.59 -169.99 -5.03 17.42 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 15 C 0.16 3.94 4.90 -3.71 -0.02 3.92 16 16 C 0.13 2.47 2.24 -67.81 -0.15 2.32 16 17 H 0.07 1.51 7.58 -51.93 -0.39 1.12 16 18 N -0.70 -12.82 4.17 -56.53 -0.24 -13.06 16 19 C 0.57 11.21 7.50 -14.90 -0.11 11.10 16 20 O -0.57 -13.16 15.58 5.15 0.08 -13.08 16 21 C -0.30 -4.85 5.70 -105.07 -0.60 -5.45 16 22 C 0.14 2.16 10.47 29.06 0.30 2.47 16 23 O -0.32 -4.20 10.47 -14.91 -0.16 -4.36 16 24 C 0.05 0.52 7.15 37.41 0.27 0.79 16 25 C -0.16 -1.65 6.23 -26.38 -0.16 -1.81 16 26 C -0.07 -0.94 5.08 -27.92 -0.14 -1.08 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 34 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 2.81 6.06 -51.93 -0.31 2.50 16 37 H 0.39 6.54 4.75 -40.82 -0.19 6.34 16 38 H 0.18 2.77 7.21 -52.49 -0.38 2.40 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.19 7.15 -51.93 -0.37 0.82 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -32.54 342.62 -7.94 -40.48 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.99 Total: 5.88 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.90 Total: 2.70 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.12 Total: -54.21 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.08 Total: -17.44 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.54 -7.94 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965396832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.323 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds