Wall clock time and date at job start Tue Mar 31 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.44664 * 2 1 4 4 C 1.53042 * 109.46240 * 240.03222 * 2 1 3 5 5 C 1.53191 * 109.31143 * 178.61351 * 4 2 1 6 6 N 1.46924 * 108.77430 * 54.63982 * 5 4 2 7 7 C 1.36935 * 120.63068 * 126.36808 * 6 5 4 8 8 H 1.08000 * 120.00186 * 331.84135 * 7 6 5 9 9 C 1.38819 * 119.99869 * 151.84465 * 7 6 5 10 10 N 1.31622 * 119.99744 * 343.10100 * 9 7 6 11 11 Si 1.86799 * 119.99948 * 163.10662 * 9 7 6 12 12 H 1.48501 * 109.47375 * 59.99895 * 11 9 7 13 13 H 1.48501 * 109.47313 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47228 * 299.99795 * 11 9 7 15 15 C 1.46926 * 118.73717 * 306.38878 * 6 5 4 16 16 C 1.53039 * 109.46017 * 119.96596 * 2 1 3 17 17 H 1.09005 * 109.52149 * 301.35798 * 16 2 1 18 18 N 1.46504 * 109.49946 * 61.43123 * 16 2 1 19 19 C 1.34774 * 120.00046 * 204.84279 * 18 16 2 20 20 O 1.21278 * 119.99973 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99488 * 180.02562 * 19 18 16 22 22 H 1.08999 * 115.48490 * 325.32375 * 21 19 18 23 23 C 1.55598 * 117.95914 * 111.14117 * 21 19 18 24 24 H 1.09007 * 120.88110 * 355.56597 * 23 21 19 25 25 C 1.54480 * 118.08249 * 197.34319 * 23 21 19 26 26 O 1.44428 * 104.80252 * 273.79232 * 25 23 21 27 27 C 1.44428 * 105.27226 * 40.50885 * 26 25 23 28 28 C 1.53002 * 117.43017 * 179.97438 * 21 19 18 29 29 H 1.09001 * 119.81087 * 4.63130 * 28 21 19 30 30 H 1.09000 * 109.47494 * 300.03635 * 1 2 3 31 31 H 1.09000 * 109.47080 * 60.03657 * 1 2 3 32 32 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49456 * 58.66620 * 4 2 1 34 34 H 1.09004 * 109.52375 * 298.58546 * 4 2 1 35 35 H 1.09001 * 109.59003 * 294.84759 * 5 4 2 36 36 H 1.09009 * 109.58331 * 174.42135 * 5 4 2 37 37 H 0.96997 * 119.99455 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.58583 * 293.82146 * 15 6 5 39 39 H 1.08997 * 109.70550 * 173.47454 * 15 6 5 40 40 H 0.97000 * 119.99806 * 24.84273 * 18 16 2 41 41 H 1.08999 * 110.37206 * 154.96189 * 25 23 21 42 42 H 1.08997 * 110.46393 * 32.67090 * 25 23 21 43 43 H 1.09005 * 110.36678 * 200.65340 * 27 26 25 44 44 H 1.09005 * 110.36748 * 78.32337 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6885 -1.2642 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2739 0.0001 8 1 5.0032 -2.9709 -0.8244 9 6 5.8606 -2.4173 1.0600 10 7 6.0653 -1.4138 1.8868 11 14 6.7611 -4.0343 1.3127 12 1 7.5850 -4.3347 0.1143 13 1 7.6411 -3.9299 2.5043 14 1 5.7735 -5.1238 1.5201 15 6 3.5712 -0.6886 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6571 -0.2212 2.1401 18 7 1.5801 -2.1117 1.2343 19 6 1.4546 -2.7931 2.3903 20 8 1.7227 -2.2549 3.4436 21 6 0.9822 -4.2240 2.3739 22 1 0.2457 -4.4660 1.6077 23 6 2.0035 -5.3338 2.7564 24 1 3.0465 -5.0891 2.9577 25 6 1.6768 -6.7907 2.3598 26 8 0.8644 -7.2945 3.4425 27 6 -0.0209 -6.2080 3.7914 28 6 0.8615 -4.9419 3.7197 29 1 1.0408 -4.3934 4.6444 30 1 -0.3634 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6573 -0.2207 -2.1398 34 1 1.6978 -1.7557 -1.2389 35 1 3.9143 0.3410 -1.3673 36 1 3.9417 -1.2846 -2.0984 37 1 6.6833 -1.5142 2.6276 38 1 3.9142 0.3410 1.3674 39 1 3.9415 -1.2823 2.1000 40 1 1.3660 -2.5422 0.3919 41 1 2.5931 -7.3740 2.2697 42 1 1.1188 -6.8149 1.4238 43 1 -0.4087 -6.3438 4.8010 44 1 -0.8399 -6.1410 3.0752 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967782322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:53 Heat of formation + Delta-G solvation = -29.375249 kcal Electronic energy + Delta-G solvation = -25345.648427 eV Core-core repulsion = 21878.481271 eV Total energy + Delta-G solvation = -3467.167156 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.48514 -39.20507 -37.45647 -34.35866 -34.11337 -32.77494 -31.03608 -29.32903 -28.73941 -27.42014 -25.93380 -24.07366 -22.71005 -21.79063 -21.10832 -20.56973 -19.94003 -18.67619 -17.49563 -16.71650 -15.86835 -15.75353 -15.17159 -15.00273 -14.77069 -14.25859 -14.01740 -13.79216 -13.62985 -13.29233 -13.11895 -12.74675 -12.63025 -12.54440 -12.00613 -11.74302 -11.61446 -11.50284 -11.39676 -11.11037 -10.92799 -10.73572 -10.53909 -10.34764 -10.25727 -10.13801 -9.93589 -9.71362 -9.69080 -9.52373 -9.29172 -8.46605 -8.36006 -6.65168 -5.77432 -3.20673 2.77634 3.36244 3.42278 3.44386 3.47337 3.86633 3.97177 4.48886 4.58351 4.66283 4.89339 4.93049 5.13927 5.16536 5.22325 5.27096 5.30393 5.35436 5.41492 5.54411 5.59029 5.67220 5.71999 5.86009 5.91200 5.98914 6.12676 6.14413 6.17359 6.27503 6.34626 6.42743 6.53086 6.62761 6.64801 6.73634 6.87102 6.99482 7.36890 7.66389 7.79608 8.10595 8.46098 8.79130 9.20918 9.85090 10.41221 11.30424 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.007221 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.398765 B = 3876.837504 C = 5527.874291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.586 5.586 7 C -0.253 4.253 8 H 0.063 0.937 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.897 3.103 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.161 3.839 16 C 0.126 3.874 17 H 0.075 0.925 18 N -0.691 5.691 19 C 0.543 3.457 20 O -0.545 6.545 21 C -0.142 4.142 22 H 0.118 0.882 23 C -0.163 4.163 24 H 0.131 0.869 25 C 0.074 3.926 26 O -0.375 6.375 27 C 0.074 3.926 28 C -0.164 4.164 29 H 0.132 0.868 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.018 0.982 36 H 0.053 0.947 37 H 0.254 0.746 38 H 0.024 0.976 39 H 0.096 0.904 40 H 0.395 0.605 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.463 -4.154 -2.447 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.383 4.383 8 H 0.080 0.920 9 C -0.192 4.192 10 N -0.541 5.541 11 Si 0.727 3.273 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.210 1.210 15 C 0.034 3.966 16 C 0.020 3.980 17 H 0.093 0.907 18 N -0.341 5.341 19 C 0.328 3.672 20 O -0.423 6.423 21 C -0.164 4.164 22 H 0.135 0.865 23 C -0.182 4.182 24 H 0.149 0.851 25 C -0.002 4.002 26 O -0.294 6.294 27 C -0.003 4.003 28 C -0.183 4.183 29 H 0.150 0.850 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.115 0.885 40 H 0.230 0.770 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.112 -3.961 -1.457 13.774 hybrid contribution 0.530 -0.670 -0.392 0.940 sum -12.582 -4.631 -1.849 13.534 Atomic orbital electron populations 1.21845 0.96012 1.01316 1.00946 1.21313 0.94579 0.99895 0.95527 0.90458 1.22080 0.99258 0.99396 0.96064 1.20934 0.90685 0.96525 0.90290 1.43950 1.48283 1.39553 0.99098 1.19025 1.09762 1.02948 1.06558 0.91964 1.25015 0.97149 0.97160 0.99917 1.69990 1.37242 1.28971 1.17945 0.86466 0.79445 0.84085 0.77340 1.20964 1.21674 1.20989 1.21184 0.86688 0.97741 0.91001 1.21801 0.98938 0.80424 0.96839 0.90714 1.45713 1.66436 1.13910 1.08022 1.19218 0.77642 0.86097 0.84215 1.90677 1.50715 1.69782 1.31096 1.22744 1.02302 0.91861 0.99452 0.86459 1.24554 0.97154 0.92907 1.03593 0.85116 1.22945 0.95707 0.91586 0.89984 1.89171 1.51120 1.36203 1.52860 1.22942 0.91844 0.83948 1.01536 1.24164 0.99566 0.99324 0.95262 0.84977 0.93126 0.93158 0.93081 0.92810 0.92721 0.96462 0.92827 0.93557 0.95780 0.88549 0.76985 0.88115 0.91735 0.88352 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.05 37.16 0.34 -1.46 16 2 C -0.09 -1.44 2.48 -90.58 -0.22 -1.66 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.13 -1.97 5.19 -26.61 -0.14 -2.11 16 5 C 0.14 2.77 6.52 -3.71 -0.02 2.75 16 6 N -0.59 -13.90 2.91 -172.32 -0.50 -14.41 16 7 C -0.25 -6.71 9.58 -15.06 -0.14 -6.86 16 8 H 0.06 1.62 7.88 -52.49 -0.41 1.21 16 9 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 10 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 11 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.16 3.80 4.90 -3.72 -0.02 3.78 16 16 C 0.13 2.34 2.24 -67.81 -0.15 2.19 16 17 H 0.07 1.46 7.58 -51.93 -0.39 1.07 16 18 N -0.69 -11.96 4.25 -53.69 -0.23 -12.19 16 19 C 0.54 9.99 7.62 -10.99 -0.08 9.91 16 20 O -0.54 -12.10 16.01 5.56 0.09 -12.01 16 21 C -0.14 -2.08 5.83 -90.39 -0.53 -2.60 16 22 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 23 C -0.16 -2.48 7.06 -87.69 -0.62 -3.10 16 24 H 0.13 2.33 8.14 -51.92 -0.42 1.91 16 25 C 0.07 0.95 7.45 37.93 0.28 1.23 16 26 O -0.37 -5.11 11.65 -35.23 -0.41 -5.52 16 27 C 0.07 0.85 7.44 37.94 0.28 1.13 16 28 C -0.16 -2.30 6.56 -89.07 -0.58 -2.88 16 29 H 0.13 2.01 7.81 -51.93 -0.41 1.61 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.82 6.41 -51.93 -0.33 0.49 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 1.03 7.93 -51.92 -0.41 0.62 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 2.70 6.06 -51.93 -0.31 2.38 16 40 H 0.40 6.11 6.64 -40.82 -0.27 5.84 16 41 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -31.26 347.63 -9.06 -40.32 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.14 Total: 7.12 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.70 Total: 0.43 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.11 Total: -52.28 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.32 Total: -17.53 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.26 -9.06 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967782322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.948 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds