Wall clock time and date at job start Tue Mar 31 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.44664 * 2 1 4 4 C 1.53042 * 109.46240 * 240.03222 * 2 1 3 5 5 C 1.53191 * 109.31143 * 178.61351 * 4 2 1 6 6 N 1.46924 * 108.77430 * 54.63982 * 5 4 2 7 7 C 1.36935 * 120.63068 * 126.36808 * 6 5 4 8 8 H 1.08000 * 120.00186 * 331.84135 * 7 6 5 9 9 C 1.38819 * 119.99869 * 151.84465 * 7 6 5 10 10 N 1.31622 * 119.99744 * 343.10100 * 9 7 6 11 11 Si 1.86799 * 119.99948 * 163.10662 * 9 7 6 12 12 H 1.48501 * 109.47375 * 59.99895 * 11 9 7 13 13 H 1.48501 * 109.47313 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47228 * 299.99795 * 11 9 7 15 15 C 1.46926 * 118.73717 * 306.38878 * 6 5 4 16 16 C 1.53039 * 109.46017 * 119.96596 * 2 1 3 17 17 H 1.09005 * 109.52149 * 301.35798 * 16 2 1 18 18 N 1.46504 * 109.49946 * 61.43123 * 16 2 1 19 19 C 1.34774 * 120.00046 * 204.84279 * 18 16 2 20 20 O 1.21278 * 119.99973 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99488 * 180.02562 * 19 18 16 22 22 H 1.08999 * 115.48490 * 325.32375 * 21 19 18 23 23 C 1.55598 * 117.95914 * 111.14117 * 21 19 18 24 24 H 1.09007 * 120.88110 * 355.56597 * 23 21 19 25 25 C 1.54480 * 118.08249 * 197.34319 * 23 21 19 26 26 O 1.44428 * 104.80252 * 273.79232 * 25 23 21 27 27 C 1.44428 * 105.27226 * 40.50885 * 26 25 23 28 28 C 1.53002 * 117.43017 * 179.97438 * 21 19 18 29 29 H 1.09001 * 119.81087 * 4.63130 * 28 21 19 30 30 H 1.09000 * 109.47494 * 300.03635 * 1 2 3 31 31 H 1.09000 * 109.47080 * 60.03657 * 1 2 3 32 32 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49456 * 58.66620 * 4 2 1 34 34 H 1.09004 * 109.52375 * 298.58546 * 4 2 1 35 35 H 1.09001 * 109.59003 * 294.84759 * 5 4 2 36 36 H 1.09009 * 109.58331 * 174.42135 * 5 4 2 37 37 H 0.96997 * 119.99455 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.58583 * 293.82146 * 15 6 5 39 39 H 1.08997 * 109.70550 * 173.47454 * 15 6 5 40 40 H 0.97000 * 119.99806 * 24.84273 * 18 16 2 41 41 H 1.08999 * 110.37206 * 154.96189 * 25 23 21 42 42 H 1.08997 * 110.46393 * 32.67090 * 25 23 21 43 43 H 1.09005 * 110.36678 * 200.65340 * 27 26 25 44 44 H 1.09005 * 110.36748 * 78.32337 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6885 -1.2642 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2739 0.0001 8 1 5.0032 -2.9709 -0.8244 9 6 5.8606 -2.4173 1.0600 10 7 6.0653 -1.4138 1.8868 11 14 6.7611 -4.0343 1.3127 12 1 7.5850 -4.3347 0.1143 13 1 7.6411 -3.9299 2.5043 14 1 5.7735 -5.1238 1.5201 15 6 3.5712 -0.6886 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6571 -0.2212 2.1401 18 7 1.5801 -2.1117 1.2343 19 6 1.4546 -2.7931 2.3903 20 8 1.7227 -2.2549 3.4436 21 6 0.9822 -4.2240 2.3739 22 1 0.2457 -4.4660 1.6077 23 6 2.0035 -5.3338 2.7564 24 1 3.0465 -5.0891 2.9577 25 6 1.6768 -6.7907 2.3598 26 8 0.8644 -7.2945 3.4425 27 6 -0.0209 -6.2080 3.7914 28 6 0.8615 -4.9419 3.7197 29 1 1.0408 -4.3934 4.6444 30 1 -0.3634 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6573 -0.2207 -2.1398 34 1 1.6978 -1.7557 -1.2389 35 1 3.9143 0.3410 -1.3673 36 1 3.9417 -1.2846 -2.0984 37 1 6.6833 -1.5142 2.6276 38 1 3.9142 0.3410 1.3674 39 1 3.9415 -1.2823 2.1000 40 1 1.3660 -2.5422 0.3919 41 1 2.5931 -7.3740 2.2697 42 1 1.1188 -6.8149 1.4238 43 1 -0.4087 -6.3438 4.8010 44 1 -0.8399 -6.1410 3.0752 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967782322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:53 Heat of formation + Delta-G solvation = -50.162103 kcal Electronic energy + Delta-G solvation = -25346.549813 eV Core-core repulsion = 21878.481271 eV Total energy + Delta-G solvation = -3468.068542 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70565 -40.57470 -38.96485 -35.94457 -35.46269 -34.30669 -32.83202 -30.94149 -29.70112 -28.97237 -27.18944 -25.78110 -24.10799 -23.12510 -22.73152 -21.69231 -21.22584 -20.27886 -18.80955 -18.58319 -17.08969 -17.01613 -16.79368 -16.16295 -16.10771 -15.81796 -15.67680 -15.34011 -14.95202 -14.78942 -14.63555 -14.11644 -13.97167 -13.60088 -13.55888 -13.14986 -13.02077 -12.86568 -12.70972 -12.61026 -12.53964 -12.48925 -12.28202 -11.95617 -11.56678 -11.45915 -11.32525 -11.27417 -11.07075 -10.82972 -10.66094 -10.53505 -9.94634 -8.64820 -7.86970 -5.31939 1.39101 1.40598 1.42469 1.48234 2.15091 2.47768 2.60462 3.01329 3.28808 3.41129 3.55984 3.67705 3.77025 3.85763 3.88810 3.99689 4.05674 4.12223 4.15610 4.38586 4.52104 4.65592 4.69085 4.71653 4.73667 4.78093 4.84113 4.91288 4.95354 4.96314 5.04028 5.10072 5.17302 5.25204 5.26981 5.47245 5.52508 5.59966 5.69057 5.70333 5.73046 6.38108 6.68109 7.13658 7.36240 7.87287 8.38357 9.17760 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.007221 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.398765 B = 3876.837504 C = 5527.874291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.052 4.052 10 N -0.936 5.936 11 Si 0.952 3.048 12 H -0.271 1.271 13 H -0.305 1.305 14 H -0.274 1.274 15 C 0.171 3.829 16 C 0.137 3.863 17 H 0.061 0.939 18 N -0.680 5.680 19 C 0.533 3.467 20 O -0.593 6.593 21 C -0.133 4.133 22 H 0.161 0.839 23 C -0.182 4.182 24 H 0.091 0.909 25 C 0.082 3.918 26 O -0.390 6.390 27 C 0.080 3.920 28 C -0.161 4.161 29 H 0.110 0.890 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.011 0.989 36 H 0.058 0.942 37 H 0.243 0.757 38 H -0.007 1.007 39 H 0.047 0.953 40 H 0.408 0.592 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.565 -5.758 -4.998 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.322 5.322 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.247 4.247 10 N -0.582 5.582 11 Si 0.781 3.219 12 H -0.196 1.196 13 H -0.232 1.232 14 H -0.200 1.200 15 C 0.044 3.956 16 C 0.030 3.970 17 H 0.079 0.921 18 N -0.330 5.330 19 C 0.320 3.680 20 O -0.474 6.474 21 C -0.153 4.153 22 H 0.178 0.822 23 C -0.201 4.201 24 H 0.109 0.891 25 C 0.006 3.994 26 O -0.309 6.309 27 C 0.004 3.996 28 C -0.180 4.180 29 H 0.128 0.872 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.011 0.989 39 H 0.065 0.935 40 H 0.246 0.754 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.133 0.867 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.249 -5.582 -4.078 17.658 hybrid contribution 1.556 -0.073 0.397 1.607 sum -14.693 -5.656 -3.681 16.168 Atomic orbital electron populations 1.21756 0.92857 1.02347 1.02199 1.21270 0.97025 0.99005 0.93352 0.90836 1.21955 0.95425 1.00596 0.97399 1.21167 0.93880 0.95808 0.88181 1.44148 1.48113 1.39399 1.00530 1.19393 1.08976 1.03332 1.06013 0.91101 1.25732 0.98797 0.99785 1.00398 1.70177 1.38517 1.30931 1.18611 0.85564 0.78436 0.81056 0.76884 1.19600 1.23235 1.19976 1.20857 0.90235 0.94825 0.89718 1.21464 0.95078 0.81835 0.98581 0.92133 1.45606 1.65563 1.13345 1.08488 1.19994 0.76747 0.87653 0.83635 1.90657 1.52689 1.71220 1.32862 1.22759 1.02627 0.88841 1.01107 0.82152 1.24517 0.95515 0.94852 1.05251 0.89091 1.22984 0.96360 0.89244 0.90800 1.89159 1.51609 1.36790 1.53318 1.23102 0.91413 0.81485 1.03559 1.24223 0.99692 0.99968 0.94114 0.87239 0.93312 0.90548 0.92141 0.89068 0.91632 0.97135 0.92350 0.94779 0.98879 0.93492 0.75426 0.87944 0.88860 0.86718 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.05 71.98 0.65 -2.16 16 2 C -0.09 -2.47 2.48 -10.77 -0.03 -2.50 16 3 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.11 -3.11 5.19 30.67 0.16 -2.95 16 5 C 0.13 5.06 6.52 86.36 0.56 5.62 16 6 N -0.60 -28.73 2.91 -699.10 -2.03 -30.76 16 7 C -0.25 -13.21 9.58 84.04 0.81 -12.40 16 8 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 9 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 10 N -0.94 -58.05 11.19 21.65 0.24 -57.80 16 11 Si 0.95 45.96 29.59 68.60 2.03 47.99 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 C 0.17 8.47 4.90 86.36 0.42 8.89 16 16 C 0.14 5.14 2.24 45.06 0.10 5.24 16 17 H 0.06 2.45 7.58 -2.38 -0.02 2.43 16 18 N -0.68 -22.92 4.25 -442.17 -1.88 -24.80 16 19 C 0.53 19.67 7.62 87.66 0.67 20.33 16 20 O -0.59 -27.65 16.01 -3.02 -0.05 -27.69 16 21 C -0.13 -3.64 5.83 -10.64 -0.06 -3.70 16 22 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16 23 C -0.18 -5.43 7.06 -8.90 -0.06 -5.49 16 24 H 0.09 3.43 8.14 -2.38 -0.02 3.41 16 25 C 0.08 1.90 7.45 72.49 0.54 2.44 16 26 O -0.39 -9.55 11.65 -148.98 -1.74 -11.28 16 27 C 0.08 1.60 7.44 72.49 0.54 2.13 16 28 C -0.16 -4.35 6.56 -9.79 -0.06 -4.41 16 29 H 0.11 3.45 7.81 -2.39 -0.02 3.43 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.17 7.54 -2.39 -0.02 1.15 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.67 6.41 -2.38 -0.02 1.65 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.06 2.12 7.93 -2.38 -0.02 2.10 16 37 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 38 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 39 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 40 H 0.41 11.48 6.64 -92.71 -0.62 10.87 16 41 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -73.65 347.63 1.60 -72.05 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.38 Total: 23.80 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 4.65 Total: 8.50 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -3.67 Total: -113.36 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.78 Total: -38.98 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -73.65 1.60 -72.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967782322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.885 kcal (2) G-P(sol) polarization free energy of solvation -73.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds