Wall clock time and date at job start Tue Mar 31 2020 07:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.45406 * 2 1 4 4 C 1.53045 * 109.45899 * 240.02864 * 2 1 3 5 5 C 1.53193 * 109.30964 * 178.61736 * 4 2 1 6 6 N 1.46928 * 108.77490 * 54.63695 * 5 4 2 7 7 C 1.36937 * 120.62690 * 126.36891 * 6 5 4 8 8 H 1.08003 * 119.99771 * 207.98384 * 7 6 5 9 9 C 1.38811 * 120.00101 * 27.98451 * 7 6 5 10 10 N 1.31620 * 120.00253 * 17.49899 * 9 7 6 11 11 Si 1.86802 * 119.99800 * 197.50131 * 9 7 6 12 12 H 1.48502 * 109.47088 * 94.06619 * 11 9 7 13 13 H 1.48501 * 109.47139 * 214.06919 * 11 9 7 14 14 H 1.48499 * 109.47414 * 334.06726 * 11 9 7 15 15 C 1.46923 * 118.74199 * 306.39310 * 6 5 4 16 16 C 1.53043 * 109.45696 * 119.96839 * 2 1 3 17 17 H 1.08998 * 109.52756 * 61.41401 * 16 2 1 18 18 N 1.46506 * 109.49510 * 301.33706 * 16 2 1 19 19 C 1.34768 * 120.00442 * 155.16664 * 18 16 2 20 20 O 1.21282 * 119.99787 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00414 * 180.27567 * 19 18 16 22 22 H 1.08993 * 115.50639 * 34.13381 * 21 19 18 23 23 C 1.53004 * 117.43133 * 179.50970 * 21 19 18 24 24 H 1.08989 * 119.80879 * 355.36597 * 23 21 19 25 25 C 1.54478 * 118.06278 * 199.09570 * 23 21 19 26 26 O 1.44427 * 104.80515 * 321.13356 * 25 23 21 27 27 C 1.44420 * 105.27399 * 319.48838 * 26 25 23 28 28 C 1.53002 * 117.43027 * 248.76920 * 21 19 18 29 29 H 1.09001 * 119.80748 * 4.62484 * 28 21 19 30 30 H 1.08994 * 109.47380 * 300.04089 * 1 2 3 31 31 H 1.09007 * 109.47073 * 60.03730 * 1 2 3 32 32 H 1.08997 * 109.47528 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.49363 * 58.66914 * 4 2 1 34 34 H 1.08999 * 109.49877 * 298.56587 * 4 2 1 35 35 H 1.09002 * 109.59121 * 294.85061 * 5 4 2 36 36 H 1.08993 * 109.58705 * 174.42480 * 5 4 2 37 37 H 0.97000 * 119.99902 * 179.97438 * 10 9 7 38 38 H 1.09010 * 109.58509 * 293.82071 * 15 6 5 39 39 H 1.08990 * 109.58884 * 173.39731 * 15 6 5 40 40 H 0.97001 * 119.99755 * 335.16260 * 18 16 2 41 41 H 1.09002 * 110.36696 * 79.96336 * 25 23 21 42 42 H 1.08991 * 110.37250 * 202.29865 * 25 23 21 43 43 H 1.09002 * 110.37502 * 159.34538 * 27 26 25 44 44 H 1.09007 * 110.36911 * 281.56400 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2501 5 6 3.5714 -0.6887 -1.2642 6 7 4.0678 -1.2490 0.0002 7 6 4.9756 -2.2742 0.0002 8 1 5.0051 -2.9693 0.8263 9 6 5.8579 -2.4200 -1.0615 10 7 6.0696 -1.4146 -1.8841 11 14 6.7448 -4.0431 -1.3227 12 1 5.9774 -4.8777 -2.2818 13 1 8.1017 -3.7838 -1.8674 14 1 6.8603 -4.7583 -0.0264 15 6 3.5713 -0.6887 1.2644 16 6 2.0398 -0.7208 1.2501 17 1 1.6977 -1.7557 1.2389 18 7 1.5254 -0.0487 2.4460 19 6 1.4000 -0.7313 3.6012 20 8 1.7125 -1.9021 3.6508 21 6 0.8650 -0.0416 4.8298 22 1 0.1058 0.7190 4.6479 23 6 0.7364 -0.8751 6.1064 24 1 0.9556 -1.9424 6.0809 25 6 -0.1987 -0.3569 7.2215 26 8 -0.0009 1.0737 7.2337 27 6 1.4193 1.2631 7.0527 28 6 1.8397 0.1973 5.9847 29 1 2.8924 -0.0601 5.8674 30 1 -0.3634 0.5144 0.8895 31 1 -0.3633 0.5133 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 1.6573 -0.2208 -2.1398 34 1 1.6978 -1.7558 -1.2382 35 1 3.9144 0.3407 -1.3673 36 1 3.9417 -1.2847 -2.0982 37 1 6.6865 -1.5164 -2.6258 38 1 3.9142 0.3409 1.3675 39 1 3.9415 -1.2846 2.0985 40 1 1.2752 0.8876 2.4062 41 1 -1.2364 -0.5945 6.9873 42 1 0.0824 -0.7870 8.1827 43 1 1.6246 2.2699 6.6891 44 1 1.9484 1.0834 7.9887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967782325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:02 Heat of formation + Delta-G solvation = -31.827527 kcal Electronic energy + Delta-G solvation = -24383.625470 eV Core-core repulsion = 20916.351974 eV Total energy + Delta-G solvation = -3467.273495 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85074 -39.30339 -37.58580 -34.60844 -34.37785 -32.97915 -31.10146 -29.16916 -28.90056 -27.47773 -26.31265 -24.09744 -22.91449 -21.48658 -20.96963 -20.86031 -19.95504 -19.21544 -17.65206 -16.80077 -16.23069 -15.79476 -15.54520 -15.41335 -14.74396 -14.56853 -14.08296 -13.74410 -13.56739 -13.39337 -13.15360 -13.07656 -12.86100 -12.47920 -12.07564 -11.98057 -11.79058 -11.63812 -11.50371 -11.04800 -10.81471 -10.67415 -10.51333 -10.45029 -10.26501 -10.14982 -10.00141 -9.90373 -9.84530 -9.63791 -9.43474 -8.79823 -8.39465 -6.67087 -5.78124 -3.20341 2.51354 3.11829 3.40184 3.47027 3.49634 3.49706 3.72951 4.37050 4.41650 4.53662 4.54270 4.60399 5.01849 5.09577 5.12305 5.17652 5.28688 5.32170 5.38485 5.38884 5.45397 5.48037 5.60811 5.70463 5.84091 5.91000 5.96537 6.06679 6.17653 6.22440 6.29516 6.40610 6.56454 6.62544 6.68252 6.73205 6.83227 7.00397 7.35471 7.64293 7.75060 7.83749 8.42003 8.48451 9.22596 9.84840 10.40626 11.30602 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.003769 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.100422 B = 7427.495656 C = 8255.491147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.168 3.832 6 N -0.587 5.587 7 C -0.251 4.251 8 H 0.066 0.934 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.143 3.857 16 C 0.132 3.868 17 H 0.086 0.914 18 N -0.714 5.714 19 C 0.541 3.459 20 O -0.535 6.535 21 C -0.145 4.145 22 H 0.123 0.877 23 C -0.170 4.170 24 H 0.136 0.864 25 C 0.072 3.928 26 O -0.374 6.374 27 C 0.072 3.928 28 C -0.173 4.173 29 H 0.134 0.866 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.019 0.981 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.396 0.604 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.908 6.845 13.011 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.310 5.310 7 C -0.381 4.381 8 H 0.084 0.916 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.732 3.268 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.203 1.203 15 C 0.015 3.985 16 C 0.027 3.973 17 H 0.104 0.896 18 N -0.363 5.363 19 C 0.326 3.674 20 O -0.412 6.412 21 C -0.166 4.166 22 H 0.141 0.859 23 C -0.188 4.188 24 H 0.154 0.846 25 C -0.004 4.004 26 O -0.293 6.293 27 C -0.004 4.004 28 C -0.192 4.192 29 H 0.151 0.849 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.229 0.771 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.701 6.150 12.930 19.139 hybrid contribution 0.565 -0.476 -0.341 0.813 sum -12.136 5.674 12.589 18.384 Atomic orbital electron populations 1.21853 0.95994 1.01553 1.00743 1.21306 0.94572 0.99668 0.95464 0.91463 1.22250 1.00656 0.99555 0.94870 1.20839 0.87334 0.97300 0.90339 1.43995 1.48120 1.39779 0.99116 1.19240 1.09615 1.02710 1.06488 0.91586 1.25019 0.97151 0.97469 0.99897 1.70045 1.37613 1.28827 1.18309 0.86264 0.78692 0.83692 0.78108 1.21425 1.21783 1.20329 1.21181 0.90097 0.96585 0.90663 1.21785 0.96706 0.96910 0.81873 0.89623 1.46025 1.65745 1.14267 1.10305 1.19387 0.77938 0.86586 0.83522 1.90732 1.49753 1.16179 1.84554 1.22128 1.02800 1.02815 0.88844 0.85876 1.23969 1.00066 0.99028 0.95776 0.84643 1.22990 1.00130 0.80921 0.96396 1.89157 1.23530 1.22570 1.94052 1.23346 0.81766 0.99023 0.96293 1.24473 0.97337 0.99486 0.97866 0.84861 0.93384 0.92953 0.92955 0.92695 0.92425 0.96315 0.89316 0.93673 0.96520 0.92482 0.77077 0.88487 0.90848 0.88379 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.02 37.16 0.34 -1.54 16 2 C -0.09 -1.45 2.27 -90.57 -0.21 -1.66 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.13 -2.48 5.36 -26.61 -0.14 -2.62 16 5 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 6 N -0.59 -14.96 2.99 -172.32 -0.52 -15.47 16 7 C -0.25 -7.09 9.58 -15.06 -0.14 -7.23 16 8 H 0.07 1.89 7.89 -52.48 -0.41 1.47 16 9 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 10 N -0.90 -26.30 11.22 55.49 0.62 -25.68 16 11 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.14 3.11 6.09 -3.72 -0.02 3.09 16 16 C 0.13 2.37 2.06 -67.81 -0.14 2.23 16 17 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 18 N -0.71 -10.19 4.37 -53.69 -0.23 -10.43 16 19 C 0.54 8.21 7.58 -10.99 -0.08 8.13 16 20 O -0.54 -10.49 16.01 5.56 0.09 -10.41 16 21 C -0.14 -1.65 5.54 -91.77 -0.51 -2.16 16 22 H 0.12 1.23 8.04 -51.93 -0.42 0.81 16 23 C -0.17 -1.79 6.63 -89.14 -0.59 -2.39 16 24 H 0.14 1.59 7.81 -51.94 -0.41 1.18 16 25 C 0.07 0.62 7.53 37.93 0.29 0.91 16 26 O -0.37 -3.77 11.30 -35.23 -0.40 -4.17 16 27 C 0.07 0.61 7.58 39.12 0.30 0.90 16 28 C -0.17 -1.76 7.12 -87.96 -0.63 -2.38 16 29 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 39 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 40 H 0.40 4.46 8.30 -40.82 -0.34 4.12 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -32.23 350.36 -9.12 -41.35 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.29 Total: 3.23 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.65 Total: -0.80 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.13 Total: -51.58 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.31 Total: -14.57 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.23 -9.12 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967782325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.526 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds