Wall clock time and date at job start Tue Mar 31 2020 07:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.45406 * 2 1 4 4 C 1.53045 * 109.45899 * 240.02864 * 2 1 3 5 5 C 1.53193 * 109.30964 * 178.61736 * 4 2 1 6 6 N 1.46928 * 108.77490 * 54.63695 * 5 4 2 7 7 C 1.36937 * 120.62690 * 126.36891 * 6 5 4 8 8 H 1.08003 * 119.99771 * 207.98384 * 7 6 5 9 9 C 1.38811 * 120.00101 * 27.98451 * 7 6 5 10 10 N 1.31620 * 120.00253 * 17.49899 * 9 7 6 11 11 Si 1.86802 * 119.99800 * 197.50131 * 9 7 6 12 12 H 1.48502 * 109.47088 * 94.06619 * 11 9 7 13 13 H 1.48501 * 109.47139 * 214.06919 * 11 9 7 14 14 H 1.48499 * 109.47414 * 334.06726 * 11 9 7 15 15 C 1.46923 * 118.74199 * 306.39310 * 6 5 4 16 16 C 1.53043 * 109.45696 * 119.96839 * 2 1 3 17 17 H 1.08998 * 109.52756 * 61.41401 * 16 2 1 18 18 N 1.46506 * 109.49510 * 301.33706 * 16 2 1 19 19 C 1.34768 * 120.00442 * 155.16664 * 18 16 2 20 20 O 1.21282 * 119.99787 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00414 * 180.27567 * 19 18 16 22 22 H 1.08993 * 115.50639 * 34.13381 * 21 19 18 23 23 C 1.53004 * 117.43133 * 179.50970 * 21 19 18 24 24 H 1.08989 * 119.80879 * 355.36597 * 23 21 19 25 25 C 1.54478 * 118.06278 * 199.09570 * 23 21 19 26 26 O 1.44427 * 104.80515 * 321.13356 * 25 23 21 27 27 C 1.44420 * 105.27399 * 319.48838 * 26 25 23 28 28 C 1.53002 * 117.43027 * 248.76920 * 21 19 18 29 29 H 1.09001 * 119.80748 * 4.62484 * 28 21 19 30 30 H 1.08994 * 109.47380 * 300.04089 * 1 2 3 31 31 H 1.09007 * 109.47073 * 60.03730 * 1 2 3 32 32 H 1.08997 * 109.47528 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.49363 * 58.66914 * 4 2 1 34 34 H 1.08999 * 109.49877 * 298.56587 * 4 2 1 35 35 H 1.09002 * 109.59121 * 294.85061 * 5 4 2 36 36 H 1.08993 * 109.58705 * 174.42480 * 5 4 2 37 37 H 0.97000 * 119.99902 * 179.97438 * 10 9 7 38 38 H 1.09010 * 109.58509 * 293.82071 * 15 6 5 39 39 H 1.08990 * 109.58884 * 173.39731 * 15 6 5 40 40 H 0.97001 * 119.99755 * 335.16260 * 18 16 2 41 41 H 1.09002 * 110.36696 * 79.96336 * 25 23 21 42 42 H 1.08991 * 110.37250 * 202.29865 * 25 23 21 43 43 H 1.09002 * 110.37502 * 159.34538 * 27 26 25 44 44 H 1.09007 * 110.36911 * 281.56400 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2501 5 6 3.5714 -0.6887 -1.2642 6 7 4.0678 -1.2490 0.0002 7 6 4.9756 -2.2742 0.0002 8 1 5.0051 -2.9693 0.8263 9 6 5.8579 -2.4200 -1.0615 10 7 6.0696 -1.4146 -1.8841 11 14 6.7448 -4.0431 -1.3227 12 1 5.9774 -4.8777 -2.2818 13 1 8.1017 -3.7838 -1.8674 14 1 6.8603 -4.7583 -0.0264 15 6 3.5713 -0.6887 1.2644 16 6 2.0398 -0.7208 1.2501 17 1 1.6977 -1.7557 1.2389 18 7 1.5254 -0.0487 2.4460 19 6 1.4000 -0.7313 3.6012 20 8 1.7125 -1.9021 3.6508 21 6 0.8650 -0.0416 4.8298 22 1 0.1058 0.7190 4.6479 23 6 0.7364 -0.8751 6.1064 24 1 0.9556 -1.9424 6.0809 25 6 -0.1987 -0.3569 7.2215 26 8 -0.0009 1.0737 7.2337 27 6 1.4193 1.2631 7.0527 28 6 1.8397 0.1973 5.9847 29 1 2.8924 -0.0601 5.8674 30 1 -0.3634 0.5144 0.8895 31 1 -0.3633 0.5133 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 1.6573 -0.2208 -2.1398 34 1 1.6978 -1.7558 -1.2382 35 1 3.9144 0.3407 -1.3673 36 1 3.9417 -1.2847 -2.0982 37 1 6.6865 -1.5164 -2.6258 38 1 3.9142 0.3409 1.3675 39 1 3.9415 -1.2846 2.0985 40 1 1.2752 0.8876 2.4062 41 1 -1.2364 -0.5945 6.9873 42 1 0.0824 -0.7870 8.1827 43 1 1.6246 2.2699 6.6891 44 1 1.9484 1.0834 7.9887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967782325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:01 Heat of formation + Delta-G solvation = -53.324128 kcal Electronic energy + Delta-G solvation = -24384.557632 eV Core-core repulsion = 20916.351974 eV Total energy + Delta-G solvation = -3468.205658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.79795 -40.53141 -39.06695 -36.22772 -35.35527 -34.47888 -33.05984 -30.74557 -29.57824 -29.05551 -27.35968 -25.88295 -24.27240 -22.83344 -22.49133 -21.67112 -21.35121 -20.54160 -18.81721 -18.64722 -17.24770 -16.98124 -16.76902 -16.40877 -16.28712 -15.83873 -15.57336 -15.26411 -15.21489 -14.87668 -14.50574 -14.20219 -14.15116 -13.60908 -13.50396 -13.23548 -13.16561 -12.81283 -12.76775 -12.67541 -12.52731 -12.31899 -12.05703 -11.97685 -11.69309 -11.50046 -11.36920 -11.28774 -11.19588 -10.94295 -10.62611 -10.57977 -10.12952 -8.72675 -7.93539 -5.39318 1.37998 1.42458 1.43642 1.53466 1.99097 2.47596 2.57205 2.96144 3.20433 3.53439 3.58376 3.68926 3.71518 3.75487 3.81395 3.98972 4.07570 4.13259 4.31346 4.42151 4.50899 4.51934 4.63857 4.70519 4.73671 4.78237 4.84357 4.88792 4.90118 4.93163 4.99820 5.01431 5.07627 5.17363 5.21294 5.42399 5.44466 5.54400 5.59937 5.73356 5.74142 6.33600 6.56602 7.09729 7.25518 7.79051 8.29270 9.12190 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.003769 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.100422 B = 7427.495656 C = 8255.491147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.081 0.919 4 C -0.123 4.123 5 C 0.173 3.827 6 N -0.607 5.607 7 C -0.271 4.271 8 H 0.052 0.948 9 C -0.041 4.041 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.145 3.855 16 C 0.150 3.850 17 H 0.054 0.946 18 N -0.699 5.699 19 C 0.538 3.462 20 O -0.586 6.586 21 C -0.146 4.146 22 H 0.146 0.854 23 C -0.174 4.174 24 H 0.118 0.882 25 C 0.078 3.922 26 O -0.387 6.387 27 C 0.078 3.922 28 C -0.168 4.168 29 H 0.123 0.877 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.005 0.995 36 H 0.054 0.946 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.028 0.972 40 H 0.416 0.584 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.770 8.355 13.987 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.048 3.952 6 N -0.331 5.331 7 C -0.401 4.401 8 H 0.069 0.931 9 C -0.237 4.237 10 N -0.573 5.573 11 Si 0.793 3.207 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.200 1.200 15 C 0.018 3.982 16 C 0.044 3.956 17 H 0.072 0.928 18 N -0.350 5.350 19 C 0.325 3.675 20 O -0.466 6.466 21 C -0.167 4.167 22 H 0.164 0.836 23 C -0.193 4.193 24 H 0.136 0.864 25 C 0.002 3.998 26 O -0.306 6.306 27 C 0.001 3.999 28 C -0.187 4.187 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.132 0.868 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.600 7.708 13.923 21.597 hybrid contribution 1.204 -0.947 -0.603 1.647 sum -13.396 6.761 13.320 20.064 Atomic orbital electron populations 1.21772 0.92862 1.01663 1.02921 1.21237 0.96998 0.99363 0.92596 0.90048 1.22087 0.96677 0.99796 0.97712 1.20708 0.90679 0.95411 0.88450 1.44215 1.48275 1.39730 1.00833 1.19394 1.10566 1.03602 1.06507 0.93071 1.25709 0.97973 1.00445 0.99596 1.70168 1.38174 1.30372 1.18597 0.85298 0.77549 0.79918 0.77956 1.20849 1.21365 1.20026 1.21207 0.92937 0.95679 0.88350 1.21257 0.93665 0.96230 0.84490 0.92763 1.45796 1.65014 1.15078 1.09119 1.20081 0.76794 0.86048 0.84527 1.90714 1.51920 1.18632 1.85372 1.22019 1.03881 1.03436 0.87318 0.83595 1.24024 1.01168 0.98298 0.95838 0.86417 1.23073 1.00262 0.80351 0.96152 1.89149 1.24289 1.23099 1.94066 1.23465 0.81215 0.98995 0.96187 1.24558 0.96644 1.00231 0.97296 0.85912 0.91205 0.90814 0.93902 0.89792 0.93637 0.97648 0.92748 0.93785 0.96118 0.95352 0.74725 0.87322 0.89126 0.86840 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.02 71.98 0.65 -2.42 16 2 C -0.08 -2.50 2.27 -10.76 -0.02 -2.52 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.12 -4.49 5.36 30.67 0.16 -4.33 16 5 C 0.17 8.34 5.31 86.36 0.46 8.80 16 6 N -0.61 -32.08 2.99 -699.11 -2.09 -34.17 16 7 C -0.27 -15.92 9.58 84.03 0.81 -15.11 16 8 H 0.05 3.09 7.89 -2.91 -0.02 3.06 16 9 C -0.04 -2.37 4.90 84.86 0.42 -1.96 16 10 N -0.93 -55.42 11.22 21.65 0.24 -55.18 16 11 Si 0.97 46.56 29.59 68.60 2.03 48.59 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 C 0.15 6.56 6.09 86.36 0.53 7.08 16 16 C 0.15 5.37 2.06 45.07 0.09 5.46 16 17 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 18 N -0.70 -19.22 4.37 -442.17 -1.93 -21.16 16 19 C 0.54 16.24 7.58 87.66 0.66 16.90 16 20 O -0.59 -23.84 16.01 -3.04 -0.05 -23.89 16 21 C -0.15 -3.10 5.54 -11.54 -0.06 -3.17 16 22 H 0.15 2.46 8.04 -2.39 -0.02 2.44 16 23 C -0.17 -3.49 6.63 -9.83 -0.07 -3.55 16 24 H 0.12 2.80 7.81 -2.39 -0.02 2.78 16 25 C 0.08 1.14 7.53 72.48 0.55 1.69 16 26 O -0.39 -6.58 11.30 -148.98 -1.68 -8.26 16 27 C 0.08 1.07 7.58 73.25 0.56 1.63 16 28 C -0.17 -3.17 7.12 -9.07 -0.06 -3.24 16 29 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.07 1.31 7.35 -2.39 -0.02 1.29 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.05 2.98 6.06 -2.39 -0.01 2.97 16 37 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.03 1.40 7.93 -2.39 -0.02 1.38 16 40 H 0.42 8.24 8.30 -92.71 -0.77 7.47 16 41 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -73.34 350.36 1.39 -71.95 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.22 Total: 16.86 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 4.66 Total: 5.26 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.78 Total: -110.51 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.73 Total: -32.15 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -73.34 1.39 -71.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967782325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.622 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds