Wall clock time and date at job start Tue Mar 31 2020 07:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.56408 * 2 1 4 4 C 1.54508 * 110.50623 * 237.32276 * 2 1 3 5 5 C 1.54485 * 104.05928 * 241.35203 * 4 2 1 6 6 O 1.44420 * 104.80231 * 23.98412 * 5 4 2 7 7 C 1.44429 * 105.27372 * 319.48604 * 6 5 4 8 8 H 1.08999 * 110.46188 * 281.63203 * 7 6 5 9 9 C 1.50700 * 110.37155 * 159.34842 * 7 6 5 10 10 O 1.21283 * 119.99854 * 359.33987 * 9 7 6 11 11 N 1.34776 * 119.99957 * 179.61820 * 9 7 6 12 12 C 1.46505 * 119.99877 * 179.72122 * 11 9 7 13 13 C 1.53004 * 109.46739 * 180.02562 * 12 11 9 14 14 H 1.08995 * 115.51807 * 29.58592 * 13 12 11 15 15 C 1.53003 * 117.43989 * 244.23654 * 13 12 11 16 16 H 1.08995 * 119.53713 * 4.11968 * 15 13 12 17 17 C 1.57694 * 116.10837 * 161.64045 * 15 13 12 18 18 N 1.48144 * 104.67261 * 87.30848 * 17 15 13 19 19 C 1.36932 * 127.83472 * 139.77148 * 18 17 15 20 20 H 1.08003 * 119.99792 * 195.59283 * 19 18 17 21 21 C 1.38814 * 120.00157 * 15.59447 * 19 18 17 22 22 N 1.31620 * 120.00176 * 9.01772 * 21 19 18 23 23 Si 1.86808 * 120.00132 * 189.01231 * 21 19 18 24 24 H 1.48499 * 109.46785 * 94.45612 * 23 21 19 25 25 H 1.48491 * 109.47197 * 214.45785 * 23 21 19 26 26 H 1.48506 * 109.46947 * 334.46020 * 23 21 19 27 27 C 1.48144 * 104.32510 * 319.77407 * 18 17 15 28 28 C 1.53003 * 117.43823 * 174.99867 * 13 12 11 29 29 H 1.08996 * 119.53957 * 355.88299 * 28 13 12 30 30 H 1.08996 * 109.47117 * 297.32073 * 1 2 3 31 31 H 1.09000 * 109.47304 * 57.32010 * 1 2 3 32 32 H 1.08993 * 109.47245 * 177.32291 * 1 2 3 33 33 H 1.08991 * 110.51524 * 359.97438 * 4 2 1 34 34 H 1.09005 * 110.50947 * 122.57751 * 4 2 1 35 35 H 1.09007 * 110.36913 * 142.81092 * 5 4 2 36 36 H 1.08997 * 110.37280 * 265.04153 * 5 4 2 37 37 H 0.96999 * 120.00160 * 359.72385 * 11 9 7 38 38 H 1.09000 * 109.47128 * 299.99968 * 12 11 9 39 39 H 1.08993 * 109.47018 * 59.99917 * 12 11 9 40 40 H 1.09002 * 110.91983 * 328.22830 * 17 15 13 41 41 H 1.09000 * 109.93106 * 205.89369 * 17 15 13 42 42 H 0.96997 * 120.00258 * 179.97438 * 22 21 19 43 43 H 1.09000 * 110.40689 * 280.79757 * 27 18 17 44 44 H 1.09000 * 110.40628 * 158.36825 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7813 -1.2181 5 6 2.8757 -1.9422 -0.5921 6 8 2.3069 -2.1177 0.7237 7 6 2.0713 -0.7812 1.2177 8 1 3.0013 -0.3361 1.5713 9 6 1.0479 -0.8035 2.3238 10 8 0.5453 -1.8537 2.6637 11 7 0.6872 0.3441 2.9314 12 6 -0.3122 0.3232 4.0025 13 6 -0.5383 1.7463 4.5169 14 1 -0.3862 2.5397 3.7852 15 6 -0.1504 2.0417 5.9671 16 1 0.3306 1.2664 6.5634 17 6 0.0353 3.5627 6.3397 18 7 -1.3203 4.0244 6.7187 19 6 -1.6656 4.8642 7.7437 20 1 -2.6935 4.9242 8.0696 21 6 -0.6945 5.6383 8.3639 22 7 0.5188 5.7019 7.8577 23 14 -1.1097 6.5901 9.9168 24 1 -0.7375 5.7828 11.1064 25 1 -0.3549 7.8688 9.9304 26 1 -2.5669 6.8749 9.9481 27 6 -2.2176 3.3715 5.7373 28 6 -1.6365 1.9520 5.5622 29 1 -2.2624 1.1097 5.8568 30 1 -0.3633 0.4717 0.9130 31 1 -0.3634 0.5549 -0.8650 32 1 -0.3633 -1.0265 -0.0480 33 1 1.2490 -1.1679 -1.8200 34 1 2.7200 -0.1463 -1.8216 35 1 2.7534 -2.8503 -1.1826 36 1 3.9304 -1.6770 -0.5192 37 1 1.0891 1.1840 2.6595 38 1 -1.2499 -0.0766 3.6167 39 1 0.0429 -0.3064 4.8183 40 1 0.4053 4.1303 5.4858 41 1 0.7190 3.6579 7.1833 42 1 1.1973 6.2432 8.2908 43 1 -2.1996 3.9092 4.7894 44 1 -3.2343 3.3205 6.1271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978730126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:26 Heat of formation + Delta-G solvation = -22.445994 kcal Electronic energy + Delta-G solvation = -23686.875125 eV Core-core repulsion = 20220.008444 eV Total energy + Delta-G solvation = -3466.866681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74181 -39.02586 -38.26414 -35.04867 -33.91053 -33.19034 -31.03067 -30.28827 -27.86227 -27.01482 -26.66067 -24.86384 -23.18107 -21.56658 -21.12487 -20.46416 -19.60976 -19.26571 -17.42367 -17.12007 -16.82072 -16.28988 -15.55828 -15.24686 -14.99397 -14.70768 -14.19233 -14.03966 -13.65220 -13.59053 -13.23980 -12.91719 -12.89536 -12.68936 -12.65813 -11.86813 -11.79891 -11.59305 -11.28362 -11.27123 -11.15343 -11.09824 -10.86118 -10.68381 -10.26079 -10.20819 -10.13060 -9.78556 -9.75964 -9.42789 -9.11534 -8.95238 -8.67164 -6.89722 -5.82765 -3.17105 2.52288 2.78003 3.36486 3.42095 3.43892 3.75396 4.07249 4.15730 4.34251 4.42875 4.44046 4.69041 4.77435 4.87194 4.93895 5.05522 5.20965 5.30476 5.31659 5.35355 5.36706 5.41334 5.49801 5.54562 5.61157 5.68861 5.75318 5.88222 5.90994 5.93038 5.96808 6.10990 6.30793 6.41600 6.53432 6.64753 6.70150 6.88878 7.31222 7.42957 7.50252 7.69244 8.14735 8.18295 9.08465 9.71012 10.48085 11.31461 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035910 B = 0.002657 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.549859 B =10535.243155 C =10665.576719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 H 0.094 0.906 4 C -0.151 4.151 5 C 0.041 3.959 6 O -0.344 6.344 7 C 0.058 3.942 8 H 0.095 0.905 9 C 0.523 3.477 10 O -0.524 6.524 11 N -0.722 5.722 12 C 0.156 3.844 13 C -0.153 4.153 14 H 0.103 0.897 15 C -0.170 4.170 16 H 0.106 0.894 17 C 0.186 3.814 18 N -0.594 5.594 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.154 3.846 28 C -0.165 4.165 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.402 0.598 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.088 0.912 42 H 0.254 0.746 43 H 0.025 0.975 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 -10.784 -18.026 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.134 4.134 3 H 0.112 0.888 4 C -0.188 4.188 5 C -0.036 4.036 6 O -0.261 6.261 7 C -0.004 4.004 8 H 0.113 0.887 9 C 0.308 3.692 10 O -0.399 6.399 11 N -0.375 5.375 12 C 0.033 3.967 13 C -0.172 4.172 14 H 0.121 0.879 15 C -0.190 4.190 16 H 0.124 0.876 17 C 0.060 3.940 18 N -0.318 5.318 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.028 3.972 28 C -0.186 4.186 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.237 0.763 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.837 -11.552 -17.459 21.284 hybrid contribution 0.166 1.040 0.516 1.173 sum 4.002 -10.512 -16.943 20.337 Atomic orbital electron populations 1.22034 0.93428 1.02966 1.03024 1.22495 0.97719 0.99923 0.93269 0.88796 1.23054 1.00701 0.97313 0.97756 1.23488 0.96885 0.99252 0.83976 1.89280 1.82870 1.23328 1.30666 1.22979 0.97805 0.85582 0.93985 0.88725 1.20017 0.82730 0.84032 0.82453 1.90728 1.54353 1.30637 1.64178 1.45982 1.43944 1.09411 1.38205 1.20873 0.91108 0.95722 0.89006 1.22541 1.05407 0.95719 0.93547 0.87906 1.25103 0.97936 1.01787 0.94140 0.87641 1.21655 0.88820 0.84443 0.99085 1.45152 1.01677 1.53156 1.31769 1.19022 0.94561 1.14824 1.07071 0.90533 1.24899 0.96451 0.98842 1.00107 1.69890 1.02998 1.43382 1.39970 0.86084 0.77581 0.79088 0.82905 1.21507 1.21662 1.20479 1.21159 0.94269 0.88887 0.92906 1.23793 0.92308 1.00106 1.02386 0.87948 0.91230 0.91836 0.91897 0.90161 0.90080 0.88679 0.91929 0.76293 0.91287 0.91364 0.95633 0.89386 0.93564 0.95771 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.10 37.16 0.30 -1.08 16 2 C -0.12 -0.88 3.62 -89.06 -0.32 -1.20 16 3 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.15 -0.96 6.74 -25.16 -0.17 -1.13 16 5 C 0.04 0.31 7.63 37.94 0.29 0.60 16 6 O -0.34 -4.21 10.91 -54.45 -0.59 -4.80 16 7 C 0.06 0.59 3.63 -27.11 -0.10 0.49 16 8 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 9 C 0.52 6.90 5.53 -10.99 -0.06 6.84 16 10 O -0.52 -9.29 16.55 -13.66 -0.23 -9.51 16 11 N -0.72 -8.26 4.32 -60.29 -0.26 -8.52 16 12 C 0.16 2.07 5.95 -4.04 -0.02 2.04 16 13 C -0.15 -2.26 5.34 -90.61 -0.48 -2.74 16 14 H 0.10 1.48 8.04 -51.93 -0.42 1.07 16 15 C -0.17 -3.11 7.03 -87.38 -0.61 -3.72 16 16 H 0.11 1.86 8.12 -51.93 -0.42 1.44 16 17 C 0.19 4.35 5.76 -0.57 0.00 4.34 16 18 N -0.59 -15.00 3.38 -166.73 -0.56 -15.56 16 19 C -0.23 -6.25 10.35 -15.06 -0.16 -6.41 16 20 H 0.08 2.05 7.85 -52.48 -0.41 1.63 16 21 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 22 N -0.92 -26.44 10.86 55.49 0.60 -25.84 16 23 Si 0.91 21.75 29.56 -169.99 -5.03 16.72 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 28 C -0.17 -2.86 6.77 -89.22 -0.60 -3.47 16 29 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.07 0.67 6.10 -51.93 -0.32 0.35 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.51 7.73 -51.93 -0.40 0.11 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 3.66 8.40 -40.82 -0.34 3.32 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 2.32 6.51 -51.93 -0.34 1.98 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -33.11 352.49 -10.08 -43.20 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.27 Total: 1.56 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.06 Total: -2.55 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.22 Total: -49.93 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.82 Total: -14.32 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.11 -10.08 -43.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978730126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.749 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds