Wall clock time and date at job start Tue Mar 31 2020 07:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.56408 * 2 1 4 4 C 1.54508 * 110.50623 * 237.32276 * 2 1 3 5 5 C 1.54485 * 104.05928 * 241.35203 * 4 2 1 6 6 O 1.44420 * 104.80231 * 23.98412 * 5 4 2 7 7 C 1.44429 * 105.27372 * 319.48604 * 6 5 4 8 8 H 1.08999 * 110.46188 * 281.63203 * 7 6 5 9 9 C 1.50700 * 110.37155 * 159.34842 * 7 6 5 10 10 O 1.21283 * 119.99854 * 359.33987 * 9 7 6 11 11 N 1.34776 * 119.99957 * 179.61820 * 9 7 6 12 12 C 1.46505 * 119.99877 * 179.72122 * 11 9 7 13 13 C 1.53004 * 109.46739 * 180.02562 * 12 11 9 14 14 H 1.08995 * 115.51807 * 29.58592 * 13 12 11 15 15 C 1.53003 * 117.43989 * 244.23654 * 13 12 11 16 16 H 1.08995 * 119.53713 * 4.11968 * 15 13 12 17 17 C 1.57694 * 116.10837 * 161.64045 * 15 13 12 18 18 N 1.48144 * 104.67261 * 87.30848 * 17 15 13 19 19 C 1.36932 * 127.83472 * 139.77148 * 18 17 15 20 20 H 1.08003 * 119.99792 * 195.59283 * 19 18 17 21 21 C 1.38814 * 120.00157 * 15.59447 * 19 18 17 22 22 N 1.31620 * 120.00176 * 9.01772 * 21 19 18 23 23 Si 1.86808 * 120.00132 * 189.01231 * 21 19 18 24 24 H 1.48499 * 109.46785 * 94.45612 * 23 21 19 25 25 H 1.48491 * 109.47197 * 214.45785 * 23 21 19 26 26 H 1.48506 * 109.46947 * 334.46020 * 23 21 19 27 27 C 1.48144 * 104.32510 * 319.77407 * 18 17 15 28 28 C 1.53003 * 117.43823 * 174.99867 * 13 12 11 29 29 H 1.08996 * 119.53957 * 355.88299 * 28 13 12 30 30 H 1.08996 * 109.47117 * 297.32073 * 1 2 3 31 31 H 1.09000 * 109.47304 * 57.32010 * 1 2 3 32 32 H 1.08993 * 109.47245 * 177.32291 * 1 2 3 33 33 H 1.08991 * 110.51524 * 359.97438 * 4 2 1 34 34 H 1.09005 * 110.50947 * 122.57751 * 4 2 1 35 35 H 1.09007 * 110.36913 * 142.81092 * 5 4 2 36 36 H 1.08997 * 110.37280 * 265.04153 * 5 4 2 37 37 H 0.96999 * 120.00160 * 359.72385 * 11 9 7 38 38 H 1.09000 * 109.47128 * 299.99968 * 12 11 9 39 39 H 1.08993 * 109.47018 * 59.99917 * 12 11 9 40 40 H 1.09002 * 110.91983 * 328.22830 * 17 15 13 41 41 H 1.09000 * 109.93106 * 205.89369 * 17 15 13 42 42 H 0.96997 * 120.00258 * 179.97438 * 22 21 19 43 43 H 1.09000 * 110.40689 * 280.79757 * 27 18 17 44 44 H 1.09000 * 110.40628 * 158.36825 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0713 -0.7813 -1.2181 5 6 2.8757 -1.9422 -0.5921 6 8 2.3069 -2.1177 0.7237 7 6 2.0713 -0.7812 1.2177 8 1 3.0013 -0.3361 1.5713 9 6 1.0479 -0.8035 2.3238 10 8 0.5453 -1.8537 2.6637 11 7 0.6872 0.3441 2.9314 12 6 -0.3122 0.3232 4.0025 13 6 -0.5383 1.7463 4.5169 14 1 -0.3862 2.5397 3.7852 15 6 -0.1504 2.0417 5.9671 16 1 0.3306 1.2664 6.5634 17 6 0.0353 3.5627 6.3397 18 7 -1.3203 4.0244 6.7187 19 6 -1.6656 4.8642 7.7437 20 1 -2.6935 4.9242 8.0696 21 6 -0.6945 5.6383 8.3639 22 7 0.5188 5.7019 7.8577 23 14 -1.1097 6.5901 9.9168 24 1 -0.7375 5.7828 11.1064 25 1 -0.3549 7.8688 9.9304 26 1 -2.5669 6.8749 9.9481 27 6 -2.2176 3.3715 5.7373 28 6 -1.6365 1.9520 5.5622 29 1 -2.2624 1.1097 5.8568 30 1 -0.3633 0.4717 0.9130 31 1 -0.3634 0.5549 -0.8650 32 1 -0.3633 -1.0265 -0.0480 33 1 1.2490 -1.1679 -1.8200 34 1 2.7200 -0.1463 -1.8216 35 1 2.7534 -2.8503 -1.1826 36 1 3.9304 -1.6770 -0.5192 37 1 1.0891 1.1840 2.6595 38 1 -1.2499 -0.0766 3.6167 39 1 0.0429 -0.3064 4.8183 40 1 0.4053 4.1303 5.4858 41 1 0.7190 3.6579 7.1833 42 1 1.1973 6.2432 8.2908 43 1 -2.1996 3.9092 4.7894 44 1 -3.2343 3.3205 6.1271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978730126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:26 Heat of formation + Delta-G solvation = -43.443051 kcal Electronic energy + Delta-G solvation = -23687.785626 eV Core-core repulsion = 20220.008444 eV Total energy + Delta-G solvation = -3467.777182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60632 -40.37228 -39.34325 -36.37524 -35.18646 -34.30970 -32.73348 -31.11239 -29.00274 -28.71668 -27.83550 -26.40117 -23.93931 -22.79876 -22.29706 -21.69014 -20.90176 -20.59328 -18.82994 -18.31163 -17.83419 -17.25358 -16.85008 -16.40183 -16.18723 -15.87352 -15.62144 -15.15071 -14.72930 -14.64133 -14.53172 -14.46105 -14.10087 -13.73731 -13.52183 -13.34213 -13.17382 -12.88321 -12.74392 -12.37769 -12.32485 -12.24916 -11.91792 -11.90441 -11.88491 -11.75022 -11.68014 -11.05957 -10.92438 -10.75316 -10.64297 -10.50894 -10.05245 -8.89951 -7.91743 -5.27716 1.46531 1.48148 1.53379 1.57159 1.85629 2.47783 2.74045 3.08255 3.26459 3.44994 3.58757 3.64639 3.72661 3.81451 3.86471 4.06904 4.20073 4.23389 4.27952 4.29519 4.41913 4.46592 4.49745 4.63174 4.68363 4.70565 4.74986 4.85538 4.94071 4.96644 5.03184 5.07665 5.15265 5.19906 5.29731 5.35634 5.43172 5.45067 5.53552 5.67466 5.76533 6.18915 6.50620 7.02044 7.18001 7.68738 8.47079 9.21709 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035910 B = 0.002657 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.549859 B =10535.243155 C =10665.576719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 H 0.123 0.877 4 C -0.145 4.145 5 C 0.033 3.967 6 O -0.385 6.385 7 C 0.056 3.944 8 H 0.119 0.881 9 C 0.521 3.479 10 O -0.576 6.576 11 N -0.709 5.709 12 C 0.164 3.836 13 C -0.109 4.109 14 H 0.114 0.886 15 C -0.179 4.179 16 H 0.113 0.887 17 C 0.190 3.810 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.079 0.921 21 C -0.062 4.062 22 N -0.946 5.946 23 Si 0.979 3.021 24 H -0.288 1.288 25 H -0.293 1.293 26 H -0.267 1.267 27 C 0.149 3.851 28 C -0.161 4.161 29 H 0.122 0.878 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.417 0.583 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.010 0.990 41 H 0.049 0.951 42 H 0.250 0.750 43 H 0.030 0.970 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -10.751 -19.634 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.130 4.130 3 H 0.141 0.859 4 C -0.182 4.182 5 C -0.043 4.043 6 O -0.303 6.303 7 C -0.005 4.005 8 H 0.136 0.864 9 C 0.308 3.692 10 O -0.455 6.455 11 N -0.363 5.363 12 C 0.040 3.960 13 C -0.128 4.128 14 H 0.132 0.868 15 C -0.199 4.199 16 H 0.131 0.869 17 C 0.064 3.936 18 N -0.345 5.345 19 C -0.369 4.369 20 H 0.097 0.903 21 C -0.256 4.256 22 N -0.593 5.593 23 Si 0.807 3.193 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.192 1.192 27 C 0.024 3.976 28 C -0.181 4.181 29 H 0.140 0.860 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.254 0.746 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.028 0.972 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.884 -11.505 -19.102 22.635 hybrid contribution 0.127 1.005 0.961 1.397 sum 4.012 -10.499 -18.141 21.341 Atomic orbital electron populations 1.22017 0.94562 1.01445 1.03315 1.22574 0.96698 1.01210 0.92474 0.85872 1.23058 1.00876 0.96967 0.97307 1.23738 0.97886 1.00282 0.82384 1.89243 1.83518 1.24737 1.32841 1.23152 0.97794 0.85661 0.93904 0.86379 1.20633 0.82602 0.83319 0.82615 1.90701 1.56406 1.32507 1.65895 1.45834 1.43264 1.09895 1.37317 1.20679 0.91867 0.94124 0.89306 1.22422 1.01767 0.96873 0.91752 0.86811 1.24778 0.99220 0.98482 0.97430 0.86900 1.21413 0.87605 0.87647 0.96927 1.45459 1.03215 1.53393 1.32423 1.19384 0.94786 1.14968 1.07808 0.90292 1.25715 0.96472 1.00273 1.03112 1.70075 1.03781 1.44261 1.41228 0.85065 0.77820 0.77371 0.79086 1.21480 1.21932 1.19161 1.21304 0.94038 0.90225 0.92010 1.23726 0.91779 0.98862 1.03757 0.85991 0.92175 0.90108 0.94460 0.90399 0.87404 0.88189 0.90146 0.74583 0.90801 0.92222 0.97185 0.93212 0.94108 0.95263 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.10 71.98 0.58 -1.86 16 2 C -0.11 -1.36 3.62 -9.78 -0.04 -1.40 16 3 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.14 -1.41 6.74 31.61 0.21 -1.20 16 5 C 0.03 0.44 7.63 72.49 0.55 0.99 16 6 O -0.38 -9.06 10.91 -130.60 -1.42 -10.48 16 7 C 0.06 1.03 3.63 30.35 0.11 1.14 16 8 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 9 C 0.52 13.16 5.53 87.66 0.48 13.64 16 10 O -0.58 -20.47 16.55 15.34 0.25 -20.21 16 11 N -0.71 -14.79 4.32 -463.05 -2.00 -16.79 16 12 C 0.16 4.01 5.95 86.38 0.51 4.53 16 13 C -0.11 -2.98 5.34 -10.79 -0.06 -3.03 16 14 H 0.11 2.95 8.04 -2.39 -0.02 2.93 16 15 C -0.18 -6.41 7.03 -8.69 -0.06 -6.47 16 16 H 0.11 3.89 8.12 -2.39 -0.02 3.87 16 17 C 0.19 9.04 5.76 87.73 0.51 9.55 16 18 N -0.62 -31.61 3.38 -681.43 -2.30 -33.91 16 19 C -0.24 -13.42 10.35 84.03 0.87 -12.55 16 20 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 21 C -0.06 -3.49 5.40 84.86 0.46 -3.03 16 22 N -0.95 -56.05 10.86 21.65 0.24 -55.81 16 23 Si 0.98 45.20 29.56 68.60 2.03 47.22 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 C 0.15 5.98 7.04 86.53 0.61 6.59 16 28 C -0.16 -5.28 6.77 -9.88 -0.07 -5.34 16 29 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 30 H 0.06 1.04 6.10 -2.39 -0.01 1.02 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.81 7.73 -2.39 -0.02 0.79 16 34 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.42 6.36 8.40 -92.71 -0.78 5.59 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.63 7.94 -2.39 -0.02 1.61 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.05 2.73 6.51 -2.39 -0.02 2.71 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -74.48 352.49 1.68 -72.80 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.21 Total: 15.62 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 4.68 Total: 1.56 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -4.07 Total: -106.51 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -1.17 Total: -30.70 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -74.48 1.68 -72.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978730126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.361 kcal (2) G-P(sol) polarization free energy of solvation -74.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds