Wall clock time and date at job start Tue Mar 31 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.55294 * 2 1 4 4 C 1.54990 * 110.62043 * 237.11470 * 2 1 3 5 5 C 1.54807 * 102.09614 * 204.31615 * 4 2 1 6 6 C 1.54109 * 104.18647 * 20.88148 * 5 4 2 7 7 H 1.08995 * 109.87759 * 242.45398 * 6 5 4 8 8 C 1.50696 * 109.87557 * 121.45151 * 6 5 4 9 9 O 1.21283 * 120.00112 * 244.99984 * 8 6 5 10 10 N 1.34772 * 120.00067 * 65.00640 * 8 6 5 11 11 C 1.46506 * 119.99976 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46655 * 179.97438 * 11 10 8 13 13 H 1.08993 * 115.52464 * 29.58814 * 12 11 10 14 14 C 1.53149 * 117.34355 * 244.32393 * 12 11 10 15 15 H 1.09001 * 120.42449 * 3.75678 * 14 12 11 16 16 C 1.54395 * 118.03196 * 160.92273 * 14 12 11 17 17 N 1.48148 * 104.72058 * 87.03441 * 16 14 12 18 18 C 1.36934 * 127.83400 * 140.35611 * 17 16 14 19 19 H 1.08004 * 120.00250 * 195.61567 * 18 17 16 20 20 C 1.38816 * 120.00098 * 15.61670 * 18 17 16 21 21 N 1.31612 * 120.00108 * 9.10877 * 20 18 17 22 22 Si 1.86803 * 119.99782 * 189.10834 * 20 18 17 23 23 H 1.48494 * 109.47343 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47135 * 120.00333 * 22 20 18 25 25 H 1.48503 * 109.46985 * 239.99891 * 22 20 18 26 26 C 1.48147 * 104.32426 * 320.35699 * 17 16 14 27 27 C 1.53009 * 117.43819 * 175.00385 * 12 11 10 28 28 H 1.08995 * 119.54061 * 354.23693 * 27 12 11 29 29 O 1.43750 * 107.29185 * 2.03048 * 6 5 4 30 30 H 1.08997 * 109.46768 * 182.88114 * 1 2 3 31 31 H 1.08999 * 109.47340 * 302.88354 * 1 2 3 32 32 H 1.08995 * 109.47024 * 62.88560 * 1 2 3 33 33 H 1.08999 * 110.90507 * 86.11982 * 4 2 1 34 34 H 1.08994 * 110.93962 * 322.53106 * 4 2 1 35 35 H 1.09002 * 110.49051 * 262.20808 * 5 4 2 36 36 H 1.08999 * 110.60559 * 139.61282 * 5 4 2 37 37 H 0.97002 * 119.99882 * 359.97438 * 10 8 6 38 38 H 1.08999 * 109.47050 * 60.00295 * 11 10 8 39 39 H 1.08998 * 109.47229 * 299.99559 * 11 10 8 40 40 H 1.08994 * 110.40085 * 328.19358 * 16 14 12 41 41 H 1.08997 * 110.40339 * 205.87820 * 16 14 12 42 42 H 0.96998 * 120.00174 * 179.97438 * 21 20 18 43 43 H 1.09006 * 110.40153 * 158.36930 * 26 17 16 44 44 H 1.08990 * 110.40795 * 280.79986 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0759 -0.7876 -1.2182 5 6 3.4812 -1.2121 -0.7267 6 6 3.3876 -1.1217 0.8088 7 1 4.0898 -0.3751 1.1796 8 6 3.6962 -2.4638 1.4208 9 8 2.8365 -3.0648 2.0297 10 7 4.9276 -2.9961 1.2917 11 6 5.2278 -4.3006 1.8872 12 6 6.6833 -4.6713 1.5958 13 1 7.3699 -3.8313 1.4908 14 6 6.9339 -5.9014 0.7187 15 1 6.0981 -6.4430 0.2756 16 6 8.3159 -6.0430 0.0451 17 7 9.1575 -6.7291 1.0530 18 6 10.0924 -7.7069 0.8414 19 1 10.4536 -8.2973 1.6706 20 6 10.5759 -7.9395 -0.4389 21 7 10.2760 -7.1107 -1.4162 22 14 11.6522 -9.4290 -0.7744 23 1 11.8406 -10.1969 0.4825 24 1 10.9988 -10.2932 -1.7899 25 1 12.9735 -8.9805 -1.2826 26 6 8.7580 -6.1172 2.3418 27 6 7.2268 -5.9504 2.2359 28 1 6.6083 -6.5017 2.9441 29 8 2.0416 -0.7347 1.1328 30 1 -0.3633 -1.0264 0.0517 31 1 -0.3634 0.5579 0.8630 32 1 -0.3633 0.4684 -0.9147 33 1 2.1483 -0.1453 -2.0958 34 1 1.4569 -1.6601 -1.4270 35 1 4.2403 -0.5268 -1.1037 36 1 3.7033 -2.2335 -1.0359 37 1 5.6151 -2.5155 0.8045 38 1 4.5683 -5.0557 1.4594 39 1 5.0737 -4.2521 2.9652 40 1 8.7271 -5.0610 -0.1884 41 1 8.2379 -6.6465 -0.8592 42 1 10.6142 -7.2730 -2.3108 43 1 9.0119 -6.7777 3.1709 44 1 9.2383 -5.1469 2.4668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978738425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:15 Heat of formation + Delta-G solvation = -27.940848 kcal Electronic energy + Delta-G solvation = -23349.002289 eV Core-core repulsion = 19881.897332 eV Total energy + Delta-G solvation = -3467.104956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54240 -39.09585 -38.34021 -34.98229 -33.42310 -32.60237 -32.07187 -30.78661 -28.06729 -27.17599 -26.38205 -24.66950 -22.71700 -21.56967 -21.17114 -20.69330 -19.73817 -19.29115 -17.60635 -16.92528 -16.79247 -16.48880 -15.52637 -15.04683 -14.81367 -14.62709 -14.25115 -14.17081 -13.77419 -13.48803 -13.06288 -12.87314 -12.76690 -12.69666 -12.60645 -12.05282 -11.85602 -11.79062 -11.28087 -11.25873 -11.20443 -11.12392 -10.86118 -10.70916 -10.33266 -10.30129 -10.12448 -9.76858 -9.64901 -9.43419 -9.09696 -8.96943 -8.66664 -6.89096 -5.82646 -3.16672 2.52509 2.78273 3.35848 3.42223 3.44558 3.66486 4.10669 4.15365 4.37837 4.43831 4.47524 4.59899 4.78073 4.87725 4.98186 5.02889 5.15651 5.29230 5.32700 5.34939 5.40238 5.41381 5.49316 5.52721 5.59686 5.72755 5.75904 5.83986 5.89095 5.91916 5.93716 6.21836 6.33354 6.51539 6.55599 6.64797 6.69238 6.89822 7.32750 7.44419 7.50517 7.69454 8.16096 8.18359 9.08643 9.71355 10.48344 11.31779 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033896 B = 0.002563 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.851959 B =10922.086270 C =11476.052649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.062 3.938 7 H 0.095 0.905 8 C 0.511 3.489 9 O -0.525 6.525 10 N -0.722 5.722 11 C 0.156 3.844 12 C -0.149 4.149 13 H 0.103 0.897 14 C -0.166 4.166 15 H 0.103 0.897 16 C 0.183 3.817 17 N -0.595 5.595 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.153 3.847 27 C -0.166 4.166 28 H 0.105 0.895 29 O -0.345 6.345 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.022 0.978 41 H 0.089 0.911 42 H 0.254 0.746 43 H 0.051 0.949 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.923 15.456 0.614 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.091 0.909 4 C -0.187 4.187 5 C -0.187 4.187 6 C 0.000 4.000 7 H 0.112 0.888 8 C 0.295 3.705 9 O -0.400 6.400 10 N -0.375 5.375 11 C 0.033 3.967 12 C -0.168 4.168 13 H 0.121 0.879 14 C -0.186 4.186 15 H 0.121 0.879 16 C 0.057 3.943 17 N -0.318 5.318 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.563 5.563 22 Si 0.743 3.257 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.027 3.973 27 C -0.186 4.186 28 H 0.123 0.877 29 O -0.263 6.263 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -15.488 14.809 1.087 21.456 hybrid contribution 1.051 -0.458 -0.631 1.309 sum -14.437 14.351 0.455 20.362 Atomic orbital electron populations 1.21764 0.92842 1.03349 1.02392 1.23219 0.95598 0.95208 0.84882 0.90948 1.23192 0.95804 1.01129 0.98577 1.22958 0.98765 1.04092 0.92901 1.22588 0.87291 0.94638 0.95467 0.88777 1.20426 0.82373 0.87134 0.80542 1.90720 1.46285 1.62105 1.40850 1.45949 1.12640 1.21853 1.57074 1.20865 0.94274 0.83561 0.98012 1.22545 0.94875 0.93389 1.06020 0.87911 1.24433 1.01681 0.98807 0.93715 0.87944 1.21070 0.83594 0.96101 0.93532 1.45220 1.43033 1.42809 1.00763 1.19053 1.14540 1.07786 0.94002 0.90511 1.24898 0.99843 0.99097 0.96530 1.69901 1.48969 1.36360 1.01022 0.86040 0.79722 0.82031 0.77932 1.20345 1.21603 1.21691 1.21158 0.89322 0.96109 0.90709 1.23865 0.98599 0.98810 0.97350 0.87742 1.89020 1.25814 1.73199 1.38295 0.91497 0.91760 0.90997 0.89740 0.90082 0.89345 0.89577 0.76318 0.91358 0.91240 0.95974 0.89262 0.93631 0.93075 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.66 37.16 0.36 -0.70 16 2 C 0.07 0.57 3.97 -25.68 -0.10 0.47 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.15 -1.09 6.58 -24.73 -0.16 -1.25 16 5 C -0.15 -1.15 6.61 -25.20 -0.17 -1.32 16 6 C 0.06 0.63 3.84 -27.31 -0.10 0.53 16 7 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 8 C 0.51 6.83 6.95 -10.99 -0.08 6.76 16 9 O -0.52 -9.43 16.53 -14.02 -0.23 -9.66 16 10 N -0.72 -8.43 5.53 -60.29 -0.33 -8.76 16 11 C 0.16 2.11 5.95 -4.04 -0.02 2.08 16 12 C -0.15 -2.23 5.39 -90.54 -0.49 -2.72 16 13 H 0.10 1.50 8.04 -51.93 -0.42 1.09 16 14 C -0.17 -3.07 6.76 -88.97 -0.60 -3.67 16 15 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 16 C 0.18 4.28 5.69 -2.40 -0.01 4.27 16 17 N -0.59 -15.09 3.38 -168.86 -0.57 -15.66 16 18 C -0.23 -6.25 10.35 -15.06 -0.16 -6.40 16 19 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 20 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 21 N -0.92 -26.51 10.86 55.49 0.60 -25.90 16 22 Si 0.91 21.78 29.56 -169.99 -5.03 16.75 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.15 3.17 7.04 -2.41 -0.02 3.15 16 27 C -0.17 -2.89 6.85 -89.05 -0.61 -3.50 16 28 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 29 O -0.34 -4.25 10.45 -54.81 -0.57 -4.82 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.65 8.06 -51.93 -0.42 0.24 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.74 7.69 -51.93 -0.40 0.34 16 37 H 0.40 3.69 8.40 -40.82 -0.34 3.34 16 38 H 0.07 1.00 7.95 -51.93 -0.41 0.58 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 2.36 6.51 -51.93 -0.34 2.02 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -33.46 357.34 -10.38 -43.84 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.37 Total: 1.42 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.26 Total: -2.59 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.30 Total: -50.33 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.80 Total: -14.48 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.46 -10.38 -43.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978738425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.896 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds