Wall clock time and date at job start Tue Mar 31 2020 06:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.55294 * 2 1 4 4 C 1.54990 * 110.62043 * 237.11470 * 2 1 3 5 5 C 1.54807 * 102.09614 * 204.31615 * 4 2 1 6 6 C 1.54109 * 104.18647 * 20.88148 * 5 4 2 7 7 H 1.08995 * 109.87759 * 242.45398 * 6 5 4 8 8 C 1.50696 * 109.87557 * 121.45151 * 6 5 4 9 9 O 1.21283 * 120.00112 * 244.99984 * 8 6 5 10 10 N 1.34772 * 120.00067 * 65.00640 * 8 6 5 11 11 C 1.46506 * 119.99976 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46655 * 179.97438 * 11 10 8 13 13 H 1.08993 * 115.52464 * 29.58814 * 12 11 10 14 14 C 1.53149 * 117.34355 * 244.32393 * 12 11 10 15 15 H 1.09001 * 120.42449 * 3.75678 * 14 12 11 16 16 C 1.54395 * 118.03196 * 160.92273 * 14 12 11 17 17 N 1.48148 * 104.72058 * 87.03441 * 16 14 12 18 18 C 1.36934 * 127.83400 * 140.35611 * 17 16 14 19 19 H 1.08004 * 120.00250 * 195.61567 * 18 17 16 20 20 C 1.38816 * 120.00098 * 15.61670 * 18 17 16 21 21 N 1.31612 * 120.00108 * 9.10877 * 20 18 17 22 22 Si 1.86803 * 119.99782 * 189.10834 * 20 18 17 23 23 H 1.48494 * 109.47343 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47135 * 120.00333 * 22 20 18 25 25 H 1.48503 * 109.46985 * 239.99891 * 22 20 18 26 26 C 1.48147 * 104.32426 * 320.35699 * 17 16 14 27 27 C 1.53009 * 117.43819 * 175.00385 * 12 11 10 28 28 H 1.08995 * 119.54061 * 354.23693 * 27 12 11 29 29 O 1.43750 * 107.29185 * 2.03048 * 6 5 4 30 30 H 1.08997 * 109.46768 * 182.88114 * 1 2 3 31 31 H 1.08999 * 109.47340 * 302.88354 * 1 2 3 32 32 H 1.08995 * 109.47024 * 62.88560 * 1 2 3 33 33 H 1.08999 * 110.90507 * 86.11982 * 4 2 1 34 34 H 1.08994 * 110.93962 * 322.53106 * 4 2 1 35 35 H 1.09002 * 110.49051 * 262.20808 * 5 4 2 36 36 H 1.08999 * 110.60559 * 139.61282 * 5 4 2 37 37 H 0.97002 * 119.99882 * 359.97438 * 10 8 6 38 38 H 1.08999 * 109.47050 * 60.00295 * 11 10 8 39 39 H 1.08998 * 109.47229 * 299.99559 * 11 10 8 40 40 H 1.08994 * 110.40085 * 328.19358 * 16 14 12 41 41 H 1.08997 * 110.40339 * 205.87820 * 16 14 12 42 42 H 0.96998 * 120.00174 * 179.97438 * 21 20 18 43 43 H 1.09006 * 110.40153 * 158.36930 * 26 17 16 44 44 H 1.08990 * 110.40795 * 280.79986 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0759 -0.7876 -1.2182 5 6 3.4812 -1.2121 -0.7267 6 6 3.3876 -1.1217 0.8088 7 1 4.0898 -0.3751 1.1796 8 6 3.6962 -2.4638 1.4208 9 8 2.8365 -3.0648 2.0297 10 7 4.9276 -2.9961 1.2917 11 6 5.2278 -4.3006 1.8872 12 6 6.6833 -4.6713 1.5958 13 1 7.3699 -3.8313 1.4908 14 6 6.9339 -5.9014 0.7187 15 1 6.0981 -6.4430 0.2756 16 6 8.3159 -6.0430 0.0451 17 7 9.1575 -6.7291 1.0530 18 6 10.0924 -7.7069 0.8414 19 1 10.4536 -8.2973 1.6706 20 6 10.5759 -7.9395 -0.4389 21 7 10.2760 -7.1107 -1.4162 22 14 11.6522 -9.4290 -0.7744 23 1 11.8406 -10.1969 0.4825 24 1 10.9988 -10.2932 -1.7899 25 1 12.9735 -8.9805 -1.2826 26 6 8.7580 -6.1172 2.3418 27 6 7.2268 -5.9504 2.2359 28 1 6.6083 -6.5017 2.9441 29 8 2.0416 -0.7347 1.1328 30 1 -0.3633 -1.0264 0.0517 31 1 -0.3634 0.5579 0.8630 32 1 -0.3633 0.4684 -0.9147 33 1 2.1483 -0.1453 -2.0958 34 1 1.4569 -1.6601 -1.4270 35 1 4.2403 -0.5268 -1.1037 36 1 3.7033 -2.2335 -1.0359 37 1 5.6151 -2.5155 0.8045 38 1 4.5683 -5.0557 1.4594 39 1 5.0737 -4.2521 2.9652 40 1 8.7271 -5.0610 -0.1884 41 1 8.2379 -6.6465 -0.8592 42 1 10.6142 -7.2730 -2.3108 43 1 9.0119 -6.7777 3.1709 44 1 9.2383 -5.1469 2.4668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978738425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:14 Heat of formation + Delta-G solvation = -49.425071 kcal Electronic energy + Delta-G solvation = -23349.933914 eV Core-core repulsion = 19881.897332 eV Total energy + Delta-G solvation = -3468.036582 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43779 -40.45663 -39.42373 -36.35636 -35.04968 -33.28817 -33.04566 -32.36580 -29.28653 -28.86760 -27.64815 -26.13124 -23.49495 -22.81736 -22.18358 -21.86759 -21.04867 -20.80051 -18.86099 -18.49883 -17.61851 -17.41989 -16.87137 -16.45247 -16.11477 -15.71349 -15.51777 -15.23898 -14.85185 -14.65673 -14.54528 -14.29715 -14.18183 -13.41766 -13.34117 -13.29799 -13.18547 -12.91414 -12.75046 -12.66569 -12.46937 -12.31328 -11.96934 -11.91823 -11.86372 -11.79921 -11.75579 -11.16031 -10.95555 -10.74725 -10.63372 -10.42265 -10.08686 -8.90475 -7.92410 -5.28183 1.46139 1.46922 1.52344 1.57672 1.85265 2.47393 2.70440 2.96654 3.26011 3.47599 3.59784 3.66160 3.72012 3.83368 3.88295 3.92333 4.18618 4.21520 4.26923 4.33972 4.43549 4.45329 4.55019 4.59805 4.67009 4.70604 4.78975 4.91143 4.92713 4.97344 5.01046 5.02235 5.17495 5.18799 5.27734 5.34504 5.42249 5.45479 5.54152 5.66893 5.87619 6.18280 6.51166 7.01480 7.18033 7.68133 8.46367 9.21440 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033896 B = 0.002563 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.851959 B =10922.086270 C =11476.052649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 H 0.094 0.906 4 C -0.147 4.147 5 C -0.145 4.145 6 C 0.062 3.938 7 H 0.123 0.877 8 C 0.508 3.492 9 O -0.578 6.578 10 N -0.709 5.709 11 C 0.163 3.837 12 C -0.106 4.106 13 H 0.114 0.886 14 C -0.177 4.177 15 H 0.109 0.891 16 C 0.189 3.811 17 N -0.622 5.622 18 C -0.240 4.240 19 H 0.079 0.921 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.979 3.021 23 H -0.266 1.266 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.148 3.852 27 C -0.161 4.161 28 H 0.125 0.875 29 O -0.383 6.383 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.006 0.994 41 H 0.051 0.949 42 H 0.250 0.750 43 H 0.056 0.944 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.169 16.873 0.767 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.004 3.996 3 H 0.112 0.888 4 C -0.185 4.185 5 C -0.183 4.183 6 C 0.001 3.999 7 H 0.140 0.860 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.363 5.363 11 C 0.039 3.961 12 C -0.125 4.125 13 H 0.132 0.868 14 C -0.196 4.196 15 H 0.127 0.873 16 C 0.063 3.937 17 N -0.346 5.346 18 C -0.369 4.369 19 H 0.097 0.903 20 C -0.257 4.257 21 N -0.594 5.594 22 Si 0.807 3.193 23 H -0.190 1.190 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.023 3.977 27 C -0.181 4.181 28 H 0.143 0.857 29 O -0.302 6.302 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -15.720 16.254 1.250 22.647 hybrid contribution 1.116 -0.855 -0.644 1.546 sum -14.604 15.398 0.606 21.231 Atomic orbital electron populations 1.21803 0.92622 1.02362 1.03573 1.23500 0.95963 0.95980 0.84146 0.88781 1.23212 0.95161 1.00955 0.99175 1.23013 0.99944 1.04350 0.91022 1.22761 0.87262 0.93038 0.96871 0.85978 1.21115 0.81835 0.88029 0.79585 1.90694 1.47862 1.63758 1.43359 1.45814 1.12809 1.21138 1.56557 1.20681 0.92700 0.84333 0.98336 1.22428 0.95827 0.92286 1.01923 0.86832 1.24125 0.99264 1.02343 0.93915 0.87311 1.20820 0.86108 0.94195 0.92567 1.45547 1.43177 1.42948 1.02923 1.19408 1.14790 1.08407 0.94253 0.90294 1.25721 1.01637 1.01863 0.96438 1.70082 1.50227 1.37997 1.01086 0.85015 0.77677 0.78748 0.77893 1.19033 1.21792 1.21732 1.21303 0.91431 0.96010 0.88948 1.23806 0.96720 1.00921 0.96652 0.85709 1.88989 1.26923 1.73929 1.40352 0.93392 0.92033 0.88517 0.87013 0.91603 0.86207 0.90694 0.74543 0.92160 0.90799 0.97627 0.93015 0.94108 0.92527 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.66 71.98 0.70 -1.27 16 2 C 0.06 0.89 3.97 31.28 0.12 1.02 16 3 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.15 -1.81 6.58 31.89 0.21 -1.60 16 5 C -0.15 -1.86 6.61 31.59 0.21 -1.65 16 6 C 0.06 1.13 3.84 30.22 0.12 1.25 16 7 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 8 C 0.51 12.96 6.95 87.66 0.61 13.57 16 9 O -0.58 -20.76 16.53 15.68 0.26 -20.50 16 10 N -0.71 -15.06 5.53 -463.06 -2.56 -17.62 16 11 C 0.16 4.07 5.95 86.38 0.51 4.58 16 12 C -0.11 -2.92 5.39 -10.74 -0.06 -2.97 16 13 H 0.11 2.99 8.04 -2.39 -0.02 2.97 16 14 C -0.18 -6.37 6.76 -9.73 -0.07 -6.43 16 15 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 16 C 0.19 9.02 5.69 86.54 0.49 9.51 16 17 N -0.62 -31.82 3.38 -688.15 -2.33 -34.15 16 18 C -0.24 -13.41 10.35 84.03 0.87 -12.54 16 19 H 0.08 4.25 7.85 -2.91 -0.02 4.22 16 20 C -0.06 -3.55 5.40 84.86 0.46 -3.09 16 21 N -0.95 -56.18 10.86 21.65 0.24 -55.95 16 22 Si 0.98 45.27 29.56 68.60 2.03 47.30 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 C 0.15 5.98 7.04 86.53 0.61 6.59 16 27 C -0.16 -5.30 6.85 -9.78 -0.07 -5.37 16 28 H 0.13 3.66 8.14 -2.39 -0.02 3.64 16 29 O -0.38 -9.02 10.45 -130.26 -1.36 -10.38 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.00 8.06 -2.39 -0.02 0.98 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 1.14 7.69 -2.39 -0.02 1.12 16 37 H 0.42 6.43 8.40 -92.71 -0.78 5.65 16 38 H 0.06 1.66 7.95 -2.39 -0.02 1.64 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.05 2.84 6.51 -2.39 -0.02 2.82 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -75.07 357.34 1.20 -73.88 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.20 Total: 15.85 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 4.72 Total: 1.58 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -4.65 Total: -107.71 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.10 Total: -30.89 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -75.07 1.20 -73.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978738425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.450 kcal (2) G-P(sol) polarization free energy of solvation -75.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds