Wall clock time and date at job start Tue Mar 31 2020 07:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.87572 * 2 1 4 4 C 1.54368 * 110.02587 * 121.06392 * 2 1 3 5 5 H 1.09002 * 110.75650 * 260.01297 * 4 2 1 6 6 N 1.46500 * 110.70903 * 23.30259 * 4 2 1 7 7 C 1.36938 * 120.00072 * 263.00596 * 6 4 2 8 8 H 1.07998 * 120.00169 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00012 * 179.97438 * 7 6 4 10 10 N 1.31622 * 120.00172 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00106 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47119 * 90.00271 * 11 9 7 13 13 H 1.48499 * 109.47041 * 209.99916 * 11 9 7 14 14 H 1.48501 * 109.46819 * 330.00353 * 11 9 7 15 15 C 1.55159 * 102.92248 * 141.64989 * 4 2 1 16 16 C 1.54911 * 101.61487 * 324.54286 * 15 4 2 17 17 N 1.47021 * 109.88474 * 238.97812 * 2 1 3 18 18 C 1.34781 * 125.64543 * 61.52353 * 17 2 1 19 19 O 1.21279 * 120.00371 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99854 * 179.97438 * 18 17 2 21 21 C 1.50695 * 109.47166 * 179.97438 * 20 18 17 22 22 C 1.29987 * 118.74210 * 95.00082 * 21 20 18 23 23 C 1.50232 * 122.86699 * 180.39062 * 22 21 20 24 24 O 1.42901 * 110.13485 * 344.39440 * 23 22 21 25 25 C 1.43307 * 113.01787 * 50.18601 * 24 23 22 26 26 C 1.50382 * 118.74753 * 274.72795 * 21 20 18 27 27 H 1.09004 * 109.47234 * 175.56711 * 1 2 3 28 28 H 1.09000 * 109.47370 * 295.57185 * 1 2 3 29 29 H 1.09010 * 109.46720 * 55.57507 * 1 2 3 30 30 H 0.97005 * 119.99587 * 83.00768 * 6 4 2 31 31 H 0.96998 * 120.00418 * 179.97438 * 10 9 7 32 32 H 1.08998 * 111.00575 * 206.45018 * 15 4 2 33 33 H 1.09005 * 111.00395 * 82.63505 * 15 4 2 34 34 H 1.09000 * 110.36776 * 155.82495 * 16 15 4 35 35 H 1.08998 * 110.36737 * 278.15451 * 16 15 4 36 36 H 1.08998 * 109.47133 * 300.00178 * 20 18 17 37 37 H 1.09005 * 109.47206 * 60.00278 * 20 18 17 38 38 H 1.07998 * 118.56729 * 0.41574 * 22 21 20 39 39 H 1.08993 * 109.36184 * 104.59922 * 23 22 21 40 40 H 1.09004 * 109.35885 * 224.33217 * 23 22 21 41 41 H 1.08999 * 109.68216 * 51.51703 * 25 24 23 42 42 H 1.08992 * 109.68648 * 172.07736 * 25 24 23 43 43 H 1.08998 * 109.45442 * 283.43728 * 26 21 20 44 44 H 1.09008 * 109.44771 * 43.36404 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0586 -0.7484 1.2424 5 1 2.3570 -0.0445 2.0194 6 7 1.0536 -1.6863 1.7488 7 6 0.2367 -1.3207 2.7852 8 1 0.3330 -0.3409 3.2291 9 6 -0.7160 -2.2092 3.2647 10 7 -0.8338 -3.4032 2.7234 11 14 -1.8308 -1.7103 4.6781 12 1 -3.0584 -1.0720 4.1387 13 1 -2.2033 -2.9144 5.4634 14 1 -1.1171 -0.7481 5.5555 15 6 3.2917 -1.5108 0.6895 16 6 2.8176 -1.8764 -0.7392 17 7 2.0301 -0.7125 -1.1848 18 6 1.8061 -0.3597 -2.4662 19 8 1.1403 0.6224 -2.7173 20 6 2.3832 -1.1854 -3.5870 21 6 1.9884 -0.5821 -4.9102 22 6 2.8122 0.2359 -5.4949 23 6 2.5096 0.8963 -6.8099 24 8 1.4191 0.2340 -7.4535 25 6 0.2849 0.0584 -6.5953 26 6 0.6591 -0.9542 -5.5069 27 1 -0.3634 -1.0246 -0.0794 28 1 -0.3634 0.4436 0.9270 29 1 -0.3633 0.5810 -0.8478 30 1 0.9668 -2.5662 1.3498 31 1 -1.4992 -4.0242 3.0587 32 1 3.4920 -2.4074 1.2762 33 1 4.1685 -0.8640 0.6567 34 1 3.6742 -2.0287 -1.3958 35 1 2.1936 -2.7698 -0.7148 36 1 3.4699 -1.2014 -3.5042 37 1 1.9990 -2.2036 -3.5232 38 1 3.7555 0.4499 -5.0145 39 1 2.2477 1.9403 -6.6382 40 1 3.3898 0.8452 -7.4509 41 1 0.0188 1.0117 -6.1389 42 1 -0.5578 -0.3205 -7.1734 43 1 0.7226 -1.9519 -5.9411 44 1 -0.1035 -0.9455 -4.7280 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986856176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:46 Heat of formation + Delta-G solvation = -50.840914 kcal Electronic energy + Delta-G solvation = -24373.668832 eV Core-core repulsion = 20905.570854 eV Total energy + Delta-G solvation = -3468.097978 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14393 -39.26638 -37.46202 -34.69776 -34.00699 -31.64131 -31.18475 -30.76048 -29.58452 -28.19324 -25.24486 -24.54830 -23.81354 -23.36249 -22.19949 -19.92265 -18.49018 -18.10075 -17.51041 -16.65795 -16.49784 -16.30654 -15.71351 -15.15316 -14.95227 -14.50738 -14.10308 -13.71828 -13.57666 -13.54278 -13.05371 -13.02226 -12.80973 -12.48994 -12.45468 -12.36270 -11.99659 -11.53296 -11.35921 -11.29534 -10.91179 -10.88373 -10.69237 -10.63371 -10.50847 -10.19891 -10.09170 -9.76982 -9.71385 -9.53165 -9.00965 -8.86390 -8.23213 -7.07326 -5.85251 -3.14608 1.98739 2.92497 3.38797 3.41011 3.45136 3.46051 3.75232 4.52083 4.54986 4.59704 4.79487 4.87237 4.97007 5.12493 5.20269 5.25170 5.29429 5.35523 5.37966 5.42955 5.50268 5.55358 5.65979 5.70205 5.71315 5.77111 5.84175 5.85997 6.07482 6.21450 6.27873 6.35479 6.43420 6.56186 6.63948 6.73832 6.81702 6.99251 7.03266 7.31407 7.63040 7.92667 8.32109 8.50128 9.44410 9.98036 10.33328 11.36819 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026933 B = 0.003411 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.372650 B = 8206.888646 C = 8639.975433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.109 3.891 3 H 0.057 0.943 4 C 0.171 3.829 5 H 0.074 0.926 6 N -0.708 5.708 7 C -0.241 4.241 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.146 4.146 16 C 0.102 3.898 17 N -0.606 5.606 18 C 0.527 3.473 19 O -0.541 6.541 20 C -0.106 4.106 21 C -0.081 4.081 22 C -0.198 4.198 23 C 0.095 3.905 24 O -0.383 6.383 25 C 0.061 3.939 26 C -0.117 4.117 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.385 0.615 31 H 0.256 0.744 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 3.966 -15.067 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.003 3.997 3 H 0.076 0.924 4 C 0.058 3.942 5 H 0.092 0.908 6 N -0.348 5.348 7 C -0.371 4.371 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.185 4.185 16 C -0.021 4.021 17 N -0.340 5.340 18 C 0.315 3.685 19 O -0.419 6.419 20 C -0.146 4.146 21 C -0.081 4.081 22 C -0.216 4.216 23 C 0.018 3.982 24 O -0.302 6.302 25 C -0.016 4.016 26 C -0.154 4.154 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.219 0.781 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.864 4.500 -15.280 18.229 hybrid contribution -0.615 -0.120 1.093 1.260 sum 8.249 4.380 -14.187 16.986 Atomic orbital electron populations 1.21747 0.93805 1.02704 1.00716 1.22718 0.96138 0.95332 0.85514 0.92446 1.21250 0.88479 0.92184 0.92293 0.90753 1.42321 1.38511 1.14778 1.39142 1.19198 1.10906 0.98939 1.08098 0.91063 1.24719 0.99743 0.96188 0.99856 1.69649 1.37452 1.06695 1.44009 0.86225 0.80953 0.77191 0.82018 1.21677 1.21806 1.20713 1.23162 0.98604 1.01820 0.94954 1.22300 0.94482 0.89259 0.96098 1.48664 1.51765 1.28422 1.05132 1.20047 0.80838 0.85351 0.82278 1.90668 1.40031 1.27937 1.83286 1.20809 1.02111 1.00323 0.91336 1.20425 0.95732 0.97812 0.94157 1.22622 1.00676 0.99828 0.98505 1.21358 0.89976 0.95055 0.91780 1.88081 1.24583 1.79626 1.37886 1.22670 0.88532 0.98518 0.91873 1.21072 0.95539 1.00040 0.98760 0.91678 0.91552 0.94257 0.78085 0.93445 0.89505 0.91131 0.91615 0.91150 0.88673 0.88364 0.86874 0.92068 0.88308 0.92362 0.88600 0.90045 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.08 37.16 0.30 -2.42 16 2 C 0.11 1.98 3.43 -66.93 -0.23 1.75 16 3 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.17 3.11 3.53 -66.07 -0.23 2.88 16 5 H 0.07 1.35 8.06 -51.93 -0.42 0.94 16 6 N -0.71 -16.12 3.83 -51.63 -0.20 -16.32 16 7 C -0.24 -6.20 8.61 -15.06 -0.13 -6.32 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 10 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 11 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.15 -2.09 6.69 -24.58 -0.16 -2.25 16 16 C 0.10 1.38 6.62 -2.53 -0.02 1.37 16 17 N -0.61 -9.74 3.07 -162.99 -0.50 -10.24 16 18 C 0.53 8.49 7.64 -10.98 -0.08 8.41 16 19 O -0.54 -10.55 15.13 5.56 0.08 -10.46 16 20 C -0.11 -1.28 4.77 -29.04 -0.14 -1.42 16 21 C -0.08 -1.00 4.40 -100.94 -0.44 -1.44 16 22 C -0.20 -2.26 9.54 -35.97 -0.34 -2.60 16 23 C 0.09 0.98 7.04 35.78 0.25 1.24 16 24 O -0.38 -4.63 10.84 -35.23 -0.38 -5.02 16 25 C 0.06 0.68 6.90 37.31 0.26 0.93 16 26 C -0.12 -1.37 6.10 -27.89 -0.17 -1.54 16 27 H 0.06 1.50 7.56 -51.93 -0.39 1.11 16 28 H 0.07 1.44 7.33 -51.93 -0.38 1.06 16 29 H 0.04 0.81 7.00 -51.92 -0.36 0.45 16 30 H 0.38 9.40 7.85 -40.82 -0.32 9.08 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 0.95 7.57 -51.93 -0.39 0.55 16 37 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 38 H 0.11 1.15 7.83 -52.49 -0.41 0.74 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -30.81 351.96 -8.49 -39.30 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.26 Total: 8.59 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.24 Total: -1.78 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.03 Total: -52.60 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.30 Total: -15.48 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.81 -8.49 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986856176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.540 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds