Wall clock time and date at job start Tue Mar 31 2020 07:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.87572 * 2 1 4 4 C 1.54368 * 110.02587 * 121.06392 * 2 1 3 5 5 H 1.09002 * 110.75650 * 260.01297 * 4 2 1 6 6 N 1.46500 * 110.70903 * 23.30259 * 4 2 1 7 7 C 1.36938 * 120.00072 * 263.00596 * 6 4 2 8 8 H 1.07998 * 120.00169 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00012 * 179.97438 * 7 6 4 10 10 N 1.31622 * 120.00172 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00106 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47119 * 90.00271 * 11 9 7 13 13 H 1.48499 * 109.47041 * 209.99916 * 11 9 7 14 14 H 1.48501 * 109.46819 * 330.00353 * 11 9 7 15 15 C 1.55159 * 102.92248 * 141.64989 * 4 2 1 16 16 C 1.54911 * 101.61487 * 324.54286 * 15 4 2 17 17 N 1.47021 * 109.88474 * 238.97812 * 2 1 3 18 18 C 1.34781 * 125.64543 * 61.52353 * 17 2 1 19 19 O 1.21279 * 120.00371 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99854 * 179.97438 * 18 17 2 21 21 C 1.50695 * 109.47166 * 179.97438 * 20 18 17 22 22 C 1.29987 * 118.74210 * 95.00082 * 21 20 18 23 23 C 1.50232 * 122.86699 * 180.39062 * 22 21 20 24 24 O 1.42901 * 110.13485 * 344.39440 * 23 22 21 25 25 C 1.43307 * 113.01787 * 50.18601 * 24 23 22 26 26 C 1.50382 * 118.74753 * 274.72795 * 21 20 18 27 27 H 1.09004 * 109.47234 * 175.56711 * 1 2 3 28 28 H 1.09000 * 109.47370 * 295.57185 * 1 2 3 29 29 H 1.09010 * 109.46720 * 55.57507 * 1 2 3 30 30 H 0.97005 * 119.99587 * 83.00768 * 6 4 2 31 31 H 0.96998 * 120.00418 * 179.97438 * 10 9 7 32 32 H 1.08998 * 111.00575 * 206.45018 * 15 4 2 33 33 H 1.09005 * 111.00395 * 82.63505 * 15 4 2 34 34 H 1.09000 * 110.36776 * 155.82495 * 16 15 4 35 35 H 1.08998 * 110.36737 * 278.15451 * 16 15 4 36 36 H 1.08998 * 109.47133 * 300.00178 * 20 18 17 37 37 H 1.09005 * 109.47206 * 60.00278 * 20 18 17 38 38 H 1.07998 * 118.56729 * 0.41574 * 22 21 20 39 39 H 1.08993 * 109.36184 * 104.59922 * 23 22 21 40 40 H 1.09004 * 109.35885 * 224.33217 * 23 22 21 41 41 H 1.08999 * 109.68216 * 51.51703 * 25 24 23 42 42 H 1.08992 * 109.68648 * 172.07736 * 25 24 23 43 43 H 1.08998 * 109.45442 * 283.43728 * 26 21 20 44 44 H 1.09008 * 109.44771 * 43.36404 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0586 -0.7484 1.2424 5 1 2.3570 -0.0445 2.0194 6 7 1.0536 -1.6863 1.7488 7 6 0.2367 -1.3207 2.7852 8 1 0.3330 -0.3409 3.2291 9 6 -0.7160 -2.2092 3.2647 10 7 -0.8338 -3.4032 2.7234 11 14 -1.8308 -1.7103 4.6781 12 1 -3.0584 -1.0720 4.1387 13 1 -2.2033 -2.9144 5.4634 14 1 -1.1171 -0.7481 5.5555 15 6 3.2917 -1.5108 0.6895 16 6 2.8176 -1.8764 -0.7392 17 7 2.0301 -0.7125 -1.1848 18 6 1.8061 -0.3597 -2.4662 19 8 1.1403 0.6224 -2.7173 20 6 2.3832 -1.1854 -3.5870 21 6 1.9884 -0.5821 -4.9102 22 6 2.8122 0.2359 -5.4949 23 6 2.5096 0.8963 -6.8099 24 8 1.4191 0.2340 -7.4535 25 6 0.2849 0.0584 -6.5953 26 6 0.6591 -0.9542 -5.5069 27 1 -0.3634 -1.0246 -0.0794 28 1 -0.3634 0.4436 0.9270 29 1 -0.3633 0.5810 -0.8478 30 1 0.9668 -2.5662 1.3498 31 1 -1.4992 -4.0242 3.0587 32 1 3.4920 -2.4074 1.2762 33 1 4.1685 -0.8640 0.6567 34 1 3.6742 -2.0287 -1.3958 35 1 2.1936 -2.7698 -0.7148 36 1 3.4699 -1.2014 -3.5042 37 1 1.9990 -2.2036 -3.5232 38 1 3.7555 0.4499 -5.0145 39 1 2.2477 1.9403 -6.6382 40 1 3.3898 0.8452 -7.4509 41 1 0.0188 1.0117 -6.1389 42 1 -0.5578 -0.3205 -7.1734 43 1 0.7226 -1.9519 -5.9411 44 1 -0.1035 -0.9455 -4.7280 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986856176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:45 Heat of formation + Delta-G solvation = -70.202144 kcal Electronic energy + Delta-G solvation = -24374.508398 eV Core-core repulsion = 20905.570854 eV Total energy + Delta-G solvation = -3468.937544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35058 -40.26337 -38.80522 -35.74289 -35.65908 -33.33148 -32.17867 -32.03536 -31.02010 -29.46379 -26.81226 -25.58363 -25.16364 -24.68889 -23.41463 -21.30259 -19.82150 -19.35125 -18.99598 -17.95201 -17.44235 -17.39323 -16.88894 -16.44776 -16.14651 -15.84333 -15.47550 -15.29365 -15.07877 -14.77099 -14.40672 -14.15337 -13.98628 -13.73162 -13.60060 -13.34756 -13.12839 -13.02503 -12.87702 -12.79606 -12.40674 -12.30161 -12.21187 -12.19331 -11.84978 -11.72167 -11.54408 -11.48615 -10.97825 -10.83369 -10.61793 -9.78993 -9.56539 -8.99469 -7.92217 -5.18923 1.08188 1.47678 1.49282 1.56111 1.69379 2.19580 2.57064 2.92395 3.39099 3.62908 3.71945 3.73938 3.75788 3.90496 4.01934 4.15874 4.24776 4.28393 4.40612 4.41275 4.46328 4.50752 4.55355 4.58714 4.63507 4.68992 4.76756 4.79148 4.84021 4.89554 4.97409 5.01306 5.12800 5.25325 5.31588 5.47274 5.49897 5.55660 5.58364 5.86116 6.14421 6.29422 6.68503 7.24436 7.37558 8.10526 8.34333 9.30664 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026933 B = 0.003411 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.372650 B = 8206.888646 C = 8639.975433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.114 3.886 3 H 0.062 0.938 4 C 0.162 3.838 5 H 0.076 0.924 6 N -0.716 5.716 7 C -0.227 4.227 8 H 0.075 0.925 9 C -0.069 4.069 10 N -0.965 5.965 11 Si 0.960 3.040 12 H -0.295 1.295 13 H -0.298 1.298 14 H -0.269 1.269 15 C -0.132 4.132 16 C 0.102 3.898 17 N -0.608 5.608 18 C 0.521 3.479 19 O -0.582 6.582 20 C -0.095 4.095 21 C -0.107 4.107 22 C -0.192 4.192 23 C 0.087 3.913 24 O -0.395 6.395 25 C 0.060 3.940 26 C -0.117 4.117 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.375 0.625 31 H 0.248 0.752 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.063 0.937 40 H 0.124 0.876 41 H 0.046 0.954 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.721 4.280 -15.978 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.008 3.992 3 H 0.080 0.920 4 C 0.051 3.949 5 H 0.094 0.906 6 N -0.354 5.354 7 C -0.359 4.359 8 H 0.093 0.907 9 C -0.262 4.262 10 N -0.616 5.616 11 Si 0.791 3.209 12 H -0.223 1.223 13 H -0.225 1.225 14 H -0.194 1.194 15 C -0.171 4.171 16 C -0.020 4.020 17 N -0.341 5.341 18 C 0.311 3.689 19 O -0.462 6.462 20 C -0.134 4.134 21 C -0.108 4.108 22 C -0.211 4.211 23 C 0.011 3.989 24 O -0.314 6.314 25 C -0.016 4.016 26 C -0.154 4.154 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.208 0.792 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.081 0.919 40 H 0.142 0.858 41 H 0.064 0.936 42 H 0.131 0.869 43 H 0.111 0.889 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.298 4.840 -16.197 20.333 hybrid contribution -1.312 -0.108 1.307 1.855 sum 9.987 4.732 -14.891 18.543 Atomic orbital electron populations 1.21546 0.96167 1.00260 0.99418 1.22435 0.94033 0.95943 0.86833 0.92026 1.21472 0.89106 0.92065 0.92261 0.90559 1.42413 1.39267 1.15098 1.38628 1.19514 1.10189 0.98507 1.07711 0.90719 1.25369 1.01729 0.96570 1.02517 1.69781 1.38435 1.07700 1.45706 0.85333 0.79204 0.76628 0.79777 1.22300 1.22513 1.19370 1.23090 0.97458 1.01738 0.94793 1.22453 0.95339 0.87631 0.96570 1.48724 1.51863 1.28829 1.04679 1.20847 0.80075 0.85135 0.82848 1.90649 1.41792 1.29925 1.83873 1.20802 1.03615 0.99790 0.89211 1.20578 0.96242 0.99199 0.94737 1.22899 1.00985 0.98545 0.98638 1.21589 0.90416 0.94899 0.91986 1.88065 1.25069 1.79832 1.38411 1.22711 0.89021 0.97918 0.91989 1.21058 0.95108 1.00868 0.98397 0.94591 0.93171 0.95037 0.79221 0.94266 0.89499 0.88040 0.87174 0.92374 0.85651 0.87150 0.85334 0.91861 0.85814 0.93583 0.86877 0.88899 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 8.08 71.98 0.58 -4.32 16 2 C 0.11 4.05 3.43 45.36 0.16 4.21 16 3 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.16 5.68 3.53 46.20 0.16 5.85 16 5 H 0.08 2.66 8.06 -2.39 -0.02 2.64 16 6 N -0.72 -32.59 3.83 -317.26 -1.21 -33.81 16 7 C -0.23 -11.75 8.61 84.03 0.72 -11.03 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 9 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 10 N -0.97 -56.77 13.06 21.65 0.28 -56.49 16 11 Si 0.96 45.15 29.55 68.60 2.03 47.18 16 12 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 13 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C -0.13 -3.37 6.69 31.99 0.21 -3.15 16 16 C 0.10 2.46 6.62 86.86 0.58 3.03 16 17 N -0.61 -18.43 3.07 -787.97 -2.42 -20.84 16 18 C 0.52 15.99 7.64 87.66 0.67 16.66 16 19 O -0.58 -22.52 15.13 -3.03 -0.05 -22.57 16 20 C -0.09 -2.03 4.77 29.10 0.14 -1.89 16 21 C -0.11 -2.45 4.40 -15.54 -0.07 -2.52 16 22 C -0.19 -3.92 9.54 26.55 0.25 -3.67 16 23 C 0.09 1.63 7.04 71.09 0.50 2.13 16 24 O -0.39 -8.94 10.84 -148.98 -1.62 -10.56 16 25 C 0.06 1.30 6.90 72.08 0.50 1.80 16 26 C -0.12 -2.66 6.10 29.85 0.18 -2.48 16 27 H 0.03 1.70 7.56 -2.38 -0.02 1.68 16 28 H 0.05 2.23 7.33 -2.39 -0.02 2.21 16 29 H 0.03 1.34 7.00 -2.38 -0.02 1.33 16 30 H 0.38 18.53 7.85 -92.70 -0.73 17.80 16 31 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.11 1.75 7.48 -2.39 -0.02 1.73 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.13 1.91 7.57 -2.39 -0.02 1.89 16 37 H 0.11 2.11 8.13 -2.38 -0.02 2.09 16 38 H 0.13 2.17 7.83 -2.91 -0.02 2.15 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.05 1.08 8.10 -2.39 -0.02 1.07 16 42 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 1.75 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -68.03 351.96 2.33 -65.70 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.26 Total: 30.11 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.05 Total: 1.28 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.35 Total: -111.14 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.66 Total: -33.13 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.03 2.33 -65.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986856176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.502 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds