Wall clock time and date at job start Tue Mar 31 2020 07:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 H 1.09002 * 110.72444 * 144.41096 * 4 2 1 6 6 N 1.46504 * 110.71992 * 21.14280 * 4 2 1 7 7 C 1.36935 * 120.00499 * 155.00094 * 6 4 2 8 8 H 1.08004 * 119.99410 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00015 * 180.02562 * 7 6 4 10 10 N 1.31618 * 120.00384 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99707 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47263 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47068 * 119.99816 * 11 9 7 14 14 H 1.48500 * 109.46914 * 239.99652 * 11 9 7 15 15 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 16 16 C 1.54907 * 101.58028 * 324.49859 * 15 4 2 17 17 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 18 18 C 1.34780 * 125.64274 * 300.45579 * 17 2 1 19 19 O 1.21270 * 120.00380 * 0.02562 * 18 17 2 20 20 C 1.50708 * 119.99384 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.46635 * 180.02562 * 20 18 17 22 22 C 1.29990 * 118.74169 * 95.00336 * 21 20 18 23 23 C 1.50226 * 122.86293 * 180.38538 * 22 21 20 24 24 O 1.42908 * 110.13661 * 344.39546 * 23 22 21 25 25 C 1.43300 * 113.01668 * 50.18331 * 24 23 22 26 26 C 1.50387 * 118.74352 * 274.72827 * 21 20 18 27 27 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 28 28 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 29 29 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 30 30 H 0.97002 * 119.99396 * 334.99695 * 6 4 2 31 31 H 0.96998 * 120.00318 * 180.02562 * 10 9 7 32 32 H 1.09000 * 111.00258 * 82.56702 * 15 4 2 33 33 H 1.08998 * 111.00706 * 206.42119 * 15 4 2 34 34 H 1.09001 * 110.36979 * 155.84714 * 16 15 4 35 35 H 1.08999 * 110.36689 * 278.06189 * 16 15 4 36 36 H 1.08999 * 109.46840 * 300.00108 * 20 18 17 37 37 H 1.08993 * 109.46953 * 60.00231 * 20 18 17 38 38 H 1.07998 * 118.56592 * 0.40728 * 22 21 20 39 39 H 1.08997 * 109.36124 * 104.59704 * 23 22 21 40 40 H 1.09000 * 109.36078 * 224.32840 * 23 22 21 41 41 H 1.09003 * 109.67991 * 51.52168 * 25 24 23 42 42 H 1.08996 * 109.68296 * 172.03162 * 25 24 23 43 43 H 1.09000 * 109.44907 * 283.43579 * 26 21 20 44 44 H 1.08988 * 109.45041 * 43.36334 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.9657 -0.2809 -1.6186 6 7 1.0294 -0.7994 -2.2886 7 6 1.3954 -0.9337 -3.6013 8 1 2.4403 -1.0012 -3.8663 9 6 0.4237 -0.9820 -4.5914 10 7 -0.8496 -0.8993 -4.2685 11 14 0.9232 -1.1646 -6.3820 12 1 2.4034 -1.2350 -6.4784 13 1 0.3308 -2.4082 -6.9369 14 1 0.4324 0.0049 -7.1545 15 6 2.3519 -2.1685 -0.6954 16 6 2.8568 -1.8508 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.7750 -0.3880 2.4652 19 8 1.0780 0.5714 2.7188 20 6 2.3554 -1.2146 3.5838 21 6 1.9221 -0.6417 4.9086 22 6 0.8726 -1.1399 5.4918 23 6 0.3545 -0.6343 6.8081 24 8 1.3481 0.1643 7.4540 25 6 1.8990 1.1733 6.5985 26 6 2.7240 0.4803 5.5083 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.4980 -0.8990 29 1 -0.3634 0.5296 0.8808 30 1 0.0910 -0.7384 -2.0506 31 1 -1.5286 -0.9334 -4.9603 32 1 1.4452 -2.7727 -0.6642 33 1 3.1271 -2.6600 -1.2833 34 1 2.7088 -2.7100 1.3885 35 1 3.9096 -1.5695 0.7110 36 1 2.0000 -2.2416 3.4987 37 1 3.4433 -1.2001 3.5196 38 1 0.3506 -1.9529 5.0091 39 1 -0.5382 -0.0325 6.6380 40 1 0.1031 -1.4811 7.4468 41 1 1.0929 1.7491 6.1437 42 1 2.5412 1.8359 7.1787 43 1 3.6406 0.0800 5.9415 44 1 2.9752 1.2023 4.7315 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986856184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:48 Heat of formation + Delta-G solvation = -47.538899 kcal Electronic energy + Delta-G solvation = -24087.497274 eV Core-core repulsion = 20619.542482 eV Total energy + Delta-G solvation = -3467.954791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26713 -39.35145 -37.54076 -34.77997 -34.20948 -31.79512 -31.25855 -30.73036 -29.70903 -28.29065 -25.23972 -24.66303 -23.94912 -23.30890 -22.42884 -19.78422 -18.62604 -18.17872 -17.57959 -16.85204 -16.56872 -16.34278 -15.67173 -15.34280 -15.00523 -14.74329 -14.28573 -13.98340 -13.61772 -13.38592 -13.24559 -12.94006 -12.77611 -12.59270 -12.37272 -12.12663 -12.06408 -11.79502 -11.59176 -11.42656 -11.21539 -10.99916 -10.85495 -10.75144 -10.48564 -10.22396 -10.01326 -9.84219 -9.77816 -9.58274 -8.99548 -8.94584 -8.40602 -7.06252 -5.85137 -3.15121 1.91444 2.78695 3.23135 3.38450 3.44351 3.46533 3.69066 4.46773 4.51486 4.52425 4.67926 4.79881 5.00544 5.04300 5.14796 5.19532 5.24389 5.29257 5.31690 5.37795 5.44792 5.52121 5.55865 5.58082 5.60028 5.66185 5.74889 5.80635 6.03016 6.08007 6.20196 6.27897 6.31694 6.52609 6.54317 6.66342 6.69300 6.82022 6.93268 6.95729 7.63282 7.76624 8.32643 8.35854 9.44972 9.99850 10.34775 11.37318 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041180 B = 0.002921 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.786105 B = 9582.610008 C = 9803.093177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 H 0.070 0.930 4 C 0.174 3.826 5 H 0.065 0.935 6 N -0.717 5.717 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.538 6.538 20 C -0.104 4.104 21 C -0.086 4.086 22 C -0.193 4.193 23 C 0.093 3.907 24 O -0.383 6.383 25 C 0.060 3.940 26 C -0.115 4.115 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.391 0.609 31 H 0.256 0.744 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -1.340 19.682 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.088 0.912 4 C 0.062 3.938 5 H 0.083 0.917 6 N -0.359 5.359 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.345 5.345 18 C 0.316 3.684 19 O -0.415 6.415 20 C -0.144 4.144 21 C -0.087 4.087 22 C -0.211 4.211 23 C 0.017 3.983 24 O -0.302 6.302 25 C -0.017 4.017 26 C -0.152 4.152 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.345 -0.828 19.884 21.214 hybrid contribution -0.121 -0.328 -1.454 1.495 sum 7.224 -1.156 18.430 19.829 Atomic orbital electron populations 1.21993 0.94631 1.02235 1.02699 1.21868 0.95385 0.95758 0.84655 0.91216 1.21178 0.93230 0.92012 0.87428 0.91666 1.42670 1.04504 1.86996 1.01772 1.19296 0.92600 1.42633 0.83065 0.90992 1.24763 0.95232 1.02585 0.98133 1.69667 0.98909 1.56984 1.32266 0.86104 0.77544 0.77289 0.85126 1.20507 1.21834 1.21809 1.23560 1.01656 1.01389 0.92983 1.22376 0.94544 0.88430 0.97275 1.48650 1.50291 1.30505 1.05037 1.20091 0.80969 0.85193 0.82133 1.90678 1.38609 1.29035 1.83187 1.20792 1.02484 0.99915 0.91219 1.20400 0.96982 0.97075 0.94233 1.22671 0.97984 1.02078 0.98393 1.21382 0.90538 0.94631 0.91728 1.88086 1.56596 1.47541 1.37930 1.22665 0.97062 0.90019 0.91911 1.21050 0.98628 0.96877 0.98660 0.92728 0.90193 0.92248 0.77120 0.93396 0.90745 0.90569 0.91446 0.91640 0.88472 0.88428 0.86727 0.91901 0.88179 0.92333 0.88638 0.90126 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.93 37.16 0.29 -2.68 16 2 C 0.13 2.24 3.48 -66.96 -0.23 2.00 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.17 3.27 3.48 -66.10 -0.23 3.04 16 5 H 0.07 1.23 8.09 -51.93 -0.42 0.80 16 6 N -0.72 -17.13 4.94 -51.65 -0.25 -17.38 16 7 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 11 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C -0.15 -2.44 6.77 -24.59 -0.17 -2.60 16 16 C 0.10 1.20 6.69 -2.53 -0.02 1.19 16 17 N -0.61 -9.11 3.08 -163.02 -0.50 -9.61 16 18 C 0.53 7.83 7.62 -10.98 -0.08 7.74 16 19 O -0.54 -9.79 14.94 5.57 0.08 -9.70 16 20 C -0.10 -1.13 4.78 -29.03 -0.14 -1.26 16 21 C -0.09 -0.98 4.40 -100.93 -0.44 -1.42 16 22 C -0.19 -2.10 9.54 -35.97 -0.34 -2.45 16 23 C 0.09 0.93 7.04 35.78 0.25 1.18 16 24 O -0.38 -4.35 10.84 -35.23 -0.38 -4.73 16 25 C 0.06 0.60 6.90 37.30 0.26 0.86 16 26 C -0.12 -1.17 6.10 -27.89 -0.17 -1.34 16 27 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 28 H 0.08 1.66 6.76 -51.93 -0.35 1.30 16 29 H 0.06 1.13 6.77 -51.93 -0.35 0.78 16 30 H 0.39 9.93 5.06 -40.82 -0.21 9.73 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.91 7.57 -51.93 -0.39 0.52 16 37 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 38 H 0.11 1.15 7.83 -52.49 -0.41 0.74 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.90 8.14 -51.94 -0.42 0.48 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -31.54 351.17 -8.46 -40.00 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.13 Total: 8.85 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.27 Total: -2.80 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.03 Total: -53.65 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.30 Total: -14.44 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.54 -8.46 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986856184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.536 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds