Wall clock time and date at job start Tue Mar 31 2020 07:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 H 1.09002 * 110.72444 * 144.41096 * 4 2 1 6 6 N 1.46504 * 110.71992 * 21.14280 * 4 2 1 7 7 C 1.36935 * 120.00499 * 155.00094 * 6 4 2 8 8 H 1.08004 * 119.99410 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00015 * 180.02562 * 7 6 4 10 10 N 1.31618 * 120.00384 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99707 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47263 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47068 * 119.99816 * 11 9 7 14 14 H 1.48500 * 109.46914 * 239.99652 * 11 9 7 15 15 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 16 16 C 1.54907 * 101.58028 * 324.49859 * 15 4 2 17 17 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 18 18 C 1.34780 * 125.64274 * 300.45579 * 17 2 1 19 19 O 1.21270 * 120.00380 * 0.02562 * 18 17 2 20 20 C 1.50708 * 119.99384 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.46635 * 180.02562 * 20 18 17 22 22 C 1.29990 * 118.74169 * 95.00336 * 21 20 18 23 23 C 1.50226 * 122.86293 * 180.38538 * 22 21 20 24 24 O 1.42908 * 110.13661 * 344.39546 * 23 22 21 25 25 C 1.43300 * 113.01668 * 50.18331 * 24 23 22 26 26 C 1.50387 * 118.74352 * 274.72827 * 21 20 18 27 27 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 28 28 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 29 29 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 30 30 H 0.97002 * 119.99396 * 334.99695 * 6 4 2 31 31 H 0.96998 * 120.00318 * 180.02562 * 10 9 7 32 32 H 1.09000 * 111.00258 * 82.56702 * 15 4 2 33 33 H 1.08998 * 111.00706 * 206.42119 * 15 4 2 34 34 H 1.09001 * 110.36979 * 155.84714 * 16 15 4 35 35 H 1.08999 * 110.36689 * 278.06189 * 16 15 4 36 36 H 1.08999 * 109.46840 * 300.00108 * 20 18 17 37 37 H 1.08993 * 109.46953 * 60.00231 * 20 18 17 38 38 H 1.07998 * 118.56592 * 0.40728 * 22 21 20 39 39 H 1.08997 * 109.36124 * 104.59704 * 23 22 21 40 40 H 1.09000 * 109.36078 * 224.32840 * 23 22 21 41 41 H 1.09003 * 109.67991 * 51.52168 * 25 24 23 42 42 H 1.08996 * 109.68296 * 172.03162 * 25 24 23 43 43 H 1.09000 * 109.44907 * 283.43579 * 26 21 20 44 44 H 1.08988 * 109.45041 * 43.36334 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.9657 -0.2809 -1.6186 6 7 1.0294 -0.7994 -2.2886 7 6 1.3954 -0.9337 -3.6013 8 1 2.4403 -1.0012 -3.8663 9 6 0.4237 -0.9820 -4.5914 10 7 -0.8496 -0.8993 -4.2685 11 14 0.9232 -1.1646 -6.3820 12 1 2.4034 -1.2350 -6.4784 13 1 0.3308 -2.4082 -6.9369 14 1 0.4324 0.0049 -7.1545 15 6 2.3519 -2.1685 -0.6954 16 6 2.8568 -1.8508 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.7750 -0.3880 2.4652 19 8 1.0780 0.5714 2.7188 20 6 2.3554 -1.2146 3.5838 21 6 1.9221 -0.6417 4.9086 22 6 0.8726 -1.1399 5.4918 23 6 0.3545 -0.6343 6.8081 24 8 1.3481 0.1643 7.4540 25 6 1.8990 1.1733 6.5985 26 6 2.7240 0.4803 5.5083 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.4980 -0.8990 29 1 -0.3634 0.5296 0.8808 30 1 0.0910 -0.7384 -2.0506 31 1 -1.5286 -0.9334 -4.9603 32 1 1.4452 -2.7727 -0.6642 33 1 3.1271 -2.6600 -1.2833 34 1 2.7088 -2.7100 1.3885 35 1 3.9096 -1.5695 0.7110 36 1 2.0000 -2.2416 3.4987 37 1 3.4433 -1.2001 3.5196 38 1 0.3506 -1.9529 5.0091 39 1 -0.5382 -0.0325 6.6380 40 1 0.1031 -1.4811 7.4468 41 1 1.0929 1.7491 6.1437 42 1 2.5412 1.8359 7.1787 43 1 3.6406 0.0800 5.9415 44 1 2.9752 1.2023 4.7315 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986856184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:48 Heat of formation + Delta-G solvation = -67.656195 kcal Electronic energy + Delta-G solvation = -24088.369625 eV Core-core repulsion = 20619.542482 eV Total energy + Delta-G solvation = -3468.827143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41261 -40.27288 -38.83791 -35.92527 -35.66247 -33.49510 -32.11598 -32.02290 -31.10250 -29.51274 -26.78583 -25.77037 -25.09321 -24.61930 -23.59091 -21.12397 -19.92051 -19.46596 -18.98361 -18.07792 -17.40272 -17.27648 -16.94359 -16.44112 -16.36111 -15.96508 -15.68877 -15.49463 -14.78189 -14.69981 -14.45910 -13.89665 -13.87300 -13.78616 -13.53670 -13.32503 -13.21944 -13.03989 -12.91770 -12.88727 -12.83619 -12.54006 -12.21256 -12.06750 -12.01309 -11.61395 -11.55512 -11.49543 -10.93952 -10.86945 -10.61188 -9.79529 -9.63485 -9.01923 -7.94496 -5.23554 1.07024 1.48994 1.49685 1.59421 1.66220 2.08330 2.57478 2.93483 3.36590 3.57090 3.67272 3.75626 3.78827 3.92105 4.01797 4.04947 4.20323 4.28102 4.36889 4.40109 4.41466 4.47487 4.52456 4.57317 4.58965 4.66216 4.69775 4.78598 4.81580 4.86769 4.90700 5.00627 5.05163 5.20214 5.26508 5.33594 5.49150 5.52939 5.54843 5.86558 6.15083 6.27284 6.61927 7.19810 7.34443 8.08187 8.31446 9.29379 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041180 B = 0.002921 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.786105 B = 9582.610008 C = 9803.093177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.134 3.866 3 H 0.061 0.939 4 C 0.165 3.835 5 H 0.069 0.931 6 N -0.732 5.732 7 C -0.237 4.237 8 H 0.082 0.918 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.296 1.296 14 H -0.298 1.298 15 C -0.146 4.146 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.524 3.476 19 O -0.579 6.579 20 C -0.094 4.094 21 C -0.104 4.104 22 C -0.199 4.199 23 C 0.088 3.912 24 O -0.395 6.395 25 C 0.057 3.943 26 C -0.114 4.114 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.380 0.620 31 H 0.250 0.750 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.061 0.939 40 H 0.121 0.879 41 H 0.044 0.956 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.118 -2.671 20.917 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 H 0.079 0.921 4 C 0.055 3.945 5 H 0.087 0.913 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.223 1.223 14 H -0.226 1.226 15 C -0.187 4.187 16 C -0.018 4.018 17 N -0.345 5.345 18 C 0.314 3.686 19 O -0.459 6.459 20 C -0.133 4.133 21 C -0.105 4.105 22 C -0.217 4.217 23 C 0.012 3.988 24 O -0.314 6.314 25 C -0.020 4.020 26 C -0.151 4.151 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.215 0.785 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.062 0.938 42 H 0.134 0.866 43 H 0.116 0.884 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.915 -2.184 21.156 23.465 hybrid contribution -0.888 0.124 -1.747 1.964 sum 9.027 -2.060 19.408 21.504 Atomic orbital electron populations 1.21797 0.96030 1.01163 1.01042 1.21568 0.94095 0.95680 0.85779 0.92115 1.21400 0.92005 0.94383 0.86740 0.91289 1.42851 1.05076 1.87311 1.02221 1.19706 0.92895 1.40048 0.84243 0.90004 1.25558 0.95319 1.03879 1.02119 1.69828 0.99915 1.59456 1.33014 0.85079 0.77982 0.76406 0.80307 1.18641 1.22302 1.22562 1.23365 1.01394 0.98504 0.95434 1.22536 0.95303 0.88635 0.95280 1.48691 1.50503 1.30883 1.04393 1.20893 0.80171 0.84961 0.82559 1.90667 1.40446 1.31022 1.83725 1.20812 1.03916 0.99759 0.88808 1.20631 0.97562 0.97629 0.94678 1.22890 0.97797 1.02244 0.98762 1.21538 0.90155 0.95159 0.91947 1.88066 1.56923 1.47866 1.38579 1.22765 0.96976 0.90018 0.92225 1.21059 0.99167 0.96493 0.98383 0.93471 0.92754 0.92755 0.78452 0.94123 0.92675 0.89314 0.88028 0.88690 0.86396 0.85621 0.86052 0.92135 0.86129 0.93770 0.86641 0.88445 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 7.93 71.98 0.57 -4.98 16 2 C 0.13 4.66 3.48 45.34 0.16 4.82 16 3 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 4 C 0.16 6.07 3.48 46.18 0.16 6.23 16 5 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 6 N -0.73 -35.41 4.94 -317.33 -1.57 -36.97 16 7 C -0.24 -12.58 9.96 84.03 0.84 -11.75 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 10 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 11 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 13 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 15 C -0.15 -4.27 6.77 31.98 0.22 -4.05 16 16 C 0.10 2.16 6.69 86.85 0.58 2.75 16 17 N -0.61 -16.87 3.08 -788.06 -2.43 -19.29 16 18 C 0.52 14.46 7.62 87.66 0.67 15.13 16 19 O -0.58 -20.80 14.94 -3.00 -0.04 -20.85 16 20 C -0.09 -1.69 4.78 29.10 0.14 -1.55 16 21 C -0.10 -2.13 4.40 -15.54 -0.07 -2.19 16 22 C -0.20 -3.96 9.54 26.54 0.25 -3.71 16 23 C 0.09 1.63 7.04 71.09 0.50 2.13 16 24 O -0.40 -8.42 10.84 -148.98 -1.62 -10.04 16 25 C 0.06 1.07 6.90 72.08 0.50 1.57 16 26 C -0.11 -2.11 6.10 29.84 0.18 -1.93 16 27 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 28 H 0.05 2.38 6.76 -2.39 -0.02 2.36 16 29 H 0.05 2.14 6.77 -2.38 -0.02 2.12 16 30 H 0.38 19.95 5.06 -92.71 -0.47 19.49 16 31 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.10 1.51 7.48 -2.39 -0.02 1.50 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.12 1.67 7.57 -2.39 -0.02 1.66 16 37 H 0.13 1.60 8.13 -2.39 -0.02 1.58 16 38 H 0.12 2.18 7.83 -2.91 -0.02 2.16 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.04 0.94 8.10 -2.39 -0.02 0.92 16 42 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -69.84 351.17 2.33 -67.50 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.52 Total: 32.40 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.16 Total: -1.36 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -3.71 Total: -114.77 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.66 Total: -30.89 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.84 2.33 -67.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986856184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.155 kcal (2) G-P(sol) polarization free energy of solvation -69.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds