Wall clock time and date at job start Tue Mar 31 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.00066 * 2 1 4 4 C 1.54327 * 109.88475 * 238.89941 * 2 1 3 5 5 H 1.08996 * 110.72159 * 336.75915 * 4 2 1 6 6 N 1.46498 * 110.71986 * 100.02739 * 4 2 1 7 7 C 1.36933 * 120.00221 * 199.97548 * 6 4 2 8 8 H 1.07995 * 120.00164 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99936 * 179.97438 * 7 6 4 10 10 N 1.31610 * 120.00202 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99764 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47187 * 90.00436 * 11 9 7 13 13 H 1.48503 * 109.46955 * 210.00185 * 11 9 7 14 14 H 1.48498 * 109.47097 * 330.00465 * 11 9 7 15 15 C 1.55155 * 102.94571 * 218.39122 * 4 2 1 16 16 C 1.54912 * 101.57968 * 35.50272 * 15 4 2 17 17 N 1.47024 * 109.88112 * 121.09472 * 2 1 3 18 18 C 1.34780 * 125.64847 * 298.62413 * 17 2 1 19 19 O 1.21289 * 119.99749 * 359.71448 * 18 17 2 20 20 C 1.50692 * 120.00414 * 179.71552 * 18 17 2 21 21 C 1.50692 * 109.47453 * 179.97438 * 20 18 17 22 22 C 1.29979 * 118.74678 * 94.99902 * 21 20 18 23 23 C 1.50234 * 122.87261 * 180.39050 * 22 21 20 24 24 O 1.42904 * 110.12811 * 344.39758 * 23 22 21 25 25 C 1.43304 * 113.02082 * 50.18425 * 24 23 22 26 26 C 1.50391 * 118.74299 * 274.73017 * 21 20 18 27 27 H 1.08993 * 109.46793 * 300.36247 * 1 2 3 28 28 H 1.09005 * 109.46593 * 60.35810 * 1 2 3 29 29 H 1.08995 * 109.46984 * 180.35793 * 1 2 3 30 30 H 0.97001 * 119.99810 * 19.97892 * 6 4 2 31 31 H 0.97002 * 120.00649 * 179.97438 * 10 9 7 32 32 H 1.08997 * 111.00368 * 277.43464 * 15 4 2 33 33 H 1.08992 * 111.03872 * 153.58929 * 15 4 2 34 34 H 1.09002 * 110.36496 * 204.15483 * 16 15 4 35 35 H 1.08995 * 110.46379 * 81.87851 * 16 15 4 36 36 H 1.08999 * 109.46911 * 300.00252 * 20 18 17 37 37 H 1.09007 * 109.47390 * 59.99552 * 20 18 17 38 38 H 1.08001 * 118.57024 * 0.36750 * 22 21 20 39 39 H 1.08990 * 109.36175 * 104.59618 * 23 22 21 40 40 H 1.08999 * 109.36506 * 224.19868 * 23 22 21 41 41 H 1.09004 * 109.68053 * 51.51955 * 25 24 23 42 42 H 1.08995 * 109.68255 * 172.03211 * 25 24 23 43 43 H 1.09003 * 109.44717 * 283.42884 * 26 21 20 44 44 H 1.08993 * 109.45267 * 43.35923 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4556 0.1959 -2.2875 7 6 2.5577 -0.2228 -3.5872 8 1 2.3425 -1.2499 -3.8422 9 6 2.9368 0.6733 -4.5773 10 7 3.1986 1.9251 -4.2667 11 14 3.0754 0.1023 -6.3505 12 1 1.7691 0.2846 -7.0328 13 1 4.1142 0.9019 -7.0482 14 1 3.4531 -1.3335 -6.3800 15 6 3.2877 -1.5143 -0.6923 16 6 2.8145 -1.8794 0.7369 17 7 2.0300 -0.7141 1.1840 18 6 1.8037 -0.3645 2.4658 19 8 1.1401 0.6190 2.7181 20 6 2.3751 -1.1954 3.5856 21 6 1.9796 -0.5942 4.9096 22 6 0.9243 -1.0528 5.5141 23 6 0.4417 -0.5164 6.8318 24 8 1.4690 0.2587 7.4532 25 6 2.0376 1.2403 6.5777 26 6 2.8245 0.5095 5.4839 27 1 -0.3633 0.5194 0.8867 28 1 -0.3633 0.5083 -0.8932 29 1 -0.3633 -1.0276 0.0064 30 1 2.6486 1.1185 -2.0586 31 1 3.4639 2.5513 -4.9585 32 1 4.1654 -0.8689 -0.6602 33 1 3.4859 -2.4111 -1.2792 34 1 3.6716 -2.0338 1.3924 35 1 2.1891 -2.7719 0.7149 36 1 1.9880 -2.2120 3.5176 37 1 3.4621 -1.2145 3.5058 38 1 0.3700 -1.8544 5.0488 39 1 -0.4346 0.1106 6.6676 40 1 0.1719 -1.3475 7.4834 41 1 1.2428 1.8354 6.1278 42 1 2.7085 1.8894 7.1403 43 1 3.7348 0.0862 5.9085 44 1 3.0860 1.2145 4.6949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986856189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:53 Heat of formation + Delta-G solvation = -54.165415 kcal Electronic energy + Delta-G solvation = -23986.777629 eV Core-core repulsion = 20518.535490 eV Total energy + Delta-G solvation = -3468.242139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25711 -39.33455 -37.48161 -34.78832 -34.15099 -31.79118 -31.25504 -30.95078 -29.71372 -28.44847 -25.24224 -24.64545 -23.89948 -23.05716 -22.29944 -20.19148 -18.87819 -18.17681 -17.28488 -16.84938 -16.59093 -16.29962 -15.94373 -15.25477 -14.87522 -14.76211 -14.29849 -13.71257 -13.59001 -13.41024 -13.17917 -13.11080 -12.92622 -12.56898 -12.49184 -12.24800 -12.09618 -11.84099 -11.64172 -11.41460 -11.18740 -11.06676 -10.86539 -10.74779 -10.62458 -10.28513 -10.05178 -9.84588 -9.80679 -9.64108 -8.99346 -8.94930 -8.42114 -7.06687 -5.84693 -3.15323 1.90356 2.77470 3.21007 3.38723 3.44090 3.45753 3.68947 4.46040 4.51415 4.52331 4.66888 4.80008 4.98514 5.05799 5.14053 5.17615 5.24572 5.28004 5.30824 5.36135 5.43273 5.44943 5.55215 5.59268 5.62916 5.66835 5.75260 5.76657 5.91188 6.06020 6.09830 6.26679 6.28532 6.42379 6.54932 6.58085 6.65837 6.71031 6.89195 6.93073 7.62491 7.74870 8.31798 8.34410 9.44070 9.98456 10.33146 11.37486 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037877 B = 0.002899 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.056487 B = 9655.978249 C = 9766.991608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.076 0.924 4 C 0.177 3.823 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.156 4.156 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.538 6.538 20 C -0.104 4.104 21 C -0.084 4.084 22 C -0.195 4.195 23 C 0.094 3.906 24 O -0.383 6.383 25 C 0.060 3.940 26 C -0.116 4.116 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.386 0.614 31 H 0.257 0.743 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 -7.945 19.667 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.095 0.905 4 C 0.065 3.935 5 H 0.082 0.918 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.345 5.345 18 C 0.316 3.684 19 O -0.416 6.416 20 C -0.144 4.144 21 C -0.085 4.085 22 C -0.213 4.213 23 C 0.017 3.983 24 O -0.301 6.301 25 C -0.016 4.016 26 C -0.153 4.153 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.220 0.780 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.239 -7.481 19.872 21.352 hybrid contribution 0.191 -0.121 -1.442 1.460 sum -2.048 -7.602 18.430 20.041 Atomic orbital electron populations 1.22036 0.94953 1.01511 1.02678 1.21888 0.94365 0.96881 0.84484 0.90550 1.21237 0.93487 0.91616 0.87186 0.91811 1.42346 1.80962 1.09114 1.03134 1.19193 1.39338 0.95152 0.83824 0.91003 1.24768 1.02058 0.95635 0.98180 1.69659 1.52458 1.03019 1.32595 0.86180 0.77378 0.77613 0.84915 1.21631 1.21738 1.20696 1.23564 1.01429 1.01750 0.92952 1.22395 0.94569 0.88305 0.97306 1.48622 1.52146 1.28689 1.05009 1.20096 0.80698 0.85455 0.82143 1.90686 1.40004 1.27638 1.83225 1.20790 1.02780 0.99650 0.91210 1.20408 0.96843 0.97074 0.94154 1.22648 0.98077 1.02206 0.98357 1.21365 0.90049 0.94829 0.92008 1.88084 1.53903 1.50171 1.37987 1.22671 0.97070 0.90358 0.91530 1.21066 0.98473 0.96958 0.98852 0.92035 0.91191 0.93182 0.77988 0.93344 0.90615 0.90564 0.91359 0.91742 0.88495 0.88339 0.86800 0.91985 0.88228 0.92325 0.88581 0.90064 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.10 37.16 0.34 -2.23 16 2 C 0.13 2.23 3.21 -66.95 -0.21 2.01 16 3 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 4 C 0.18 3.32 3.12 -66.10 -0.21 3.11 16 5 H 0.06 1.21 7.83 -51.93 -0.41 0.80 16 6 N -0.72 -17.17 5.25 -51.65 -0.27 -17.44 16 7 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 11 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C -0.16 -2.47 6.77 -24.58 -0.17 -2.63 16 16 C 0.10 1.21 6.69 -2.53 -0.02 1.20 16 17 N -0.61 -9.10 3.07 -163.01 -0.50 -9.60 16 18 C 0.53 7.81 7.63 -10.99 -0.08 7.73 16 19 O -0.54 -9.78 15.06 5.55 0.08 -9.70 16 20 C -0.10 -1.13 4.78 -29.04 -0.14 -1.26 16 21 C -0.08 -0.95 4.40 -100.93 -0.44 -1.40 16 22 C -0.19 -2.06 9.54 -35.96 -0.34 -2.40 16 23 C 0.09 0.91 7.05 35.78 0.25 1.16 16 24 O -0.38 -4.35 10.84 -35.23 -0.38 -4.73 16 25 C 0.06 0.62 6.90 37.30 0.26 0.88 16 26 C -0.12 -1.23 6.10 -27.89 -0.17 -1.40 16 27 H 0.06 1.07 6.87 -51.93 -0.36 0.71 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.39 10.03 7.51 -40.82 -0.31 9.73 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.69 7.49 -51.93 -0.39 0.30 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.86 7.87 -51.93 -0.41 0.46 16 37 H 0.10 0.91 7.83 -51.92 -0.41 0.50 16 38 H 0.11 1.08 7.83 -52.49 -0.41 0.66 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.64 8.10 -51.93 -0.42 0.21 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 355.48 15.07 5.36 5.36 Total: -1.00 -31.48 355.48 -8.47 -39.95 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.28 Total: 8.40 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.18 Total: -2.23 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.05 Total: -53.78 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.30 Total: -14.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.48 -8.47 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986856189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.211 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds