Wall clock time and date at job start Tue Mar 31 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.00066 * 2 1 4 4 C 1.54327 * 109.88475 * 238.89941 * 2 1 3 5 5 H 1.08996 * 110.72159 * 336.75915 * 4 2 1 6 6 N 1.46498 * 110.71986 * 100.02739 * 4 2 1 7 7 C 1.36933 * 120.00221 * 199.97548 * 6 4 2 8 8 H 1.07995 * 120.00164 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99936 * 179.97438 * 7 6 4 10 10 N 1.31610 * 120.00202 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99764 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47187 * 90.00436 * 11 9 7 13 13 H 1.48503 * 109.46955 * 210.00185 * 11 9 7 14 14 H 1.48498 * 109.47097 * 330.00465 * 11 9 7 15 15 C 1.55155 * 102.94571 * 218.39122 * 4 2 1 16 16 C 1.54912 * 101.57968 * 35.50272 * 15 4 2 17 17 N 1.47024 * 109.88112 * 121.09472 * 2 1 3 18 18 C 1.34780 * 125.64847 * 298.62413 * 17 2 1 19 19 O 1.21289 * 119.99749 * 359.71448 * 18 17 2 20 20 C 1.50692 * 120.00414 * 179.71552 * 18 17 2 21 21 C 1.50692 * 109.47453 * 179.97438 * 20 18 17 22 22 C 1.29979 * 118.74678 * 94.99902 * 21 20 18 23 23 C 1.50234 * 122.87261 * 180.39050 * 22 21 20 24 24 O 1.42904 * 110.12811 * 344.39758 * 23 22 21 25 25 C 1.43304 * 113.02082 * 50.18425 * 24 23 22 26 26 C 1.50391 * 118.74299 * 274.73017 * 21 20 18 27 27 H 1.08993 * 109.46793 * 300.36247 * 1 2 3 28 28 H 1.09005 * 109.46593 * 60.35810 * 1 2 3 29 29 H 1.08995 * 109.46984 * 180.35793 * 1 2 3 30 30 H 0.97001 * 119.99810 * 19.97892 * 6 4 2 31 31 H 0.97002 * 120.00649 * 179.97438 * 10 9 7 32 32 H 1.08997 * 111.00368 * 277.43464 * 15 4 2 33 33 H 1.08992 * 111.03872 * 153.58929 * 15 4 2 34 34 H 1.09002 * 110.36496 * 204.15483 * 16 15 4 35 35 H 1.08995 * 110.46379 * 81.87851 * 16 15 4 36 36 H 1.08999 * 109.46911 * 300.00252 * 20 18 17 37 37 H 1.09007 * 109.47390 * 59.99552 * 20 18 17 38 38 H 1.08001 * 118.57024 * 0.36750 * 22 21 20 39 39 H 1.08990 * 109.36175 * 104.59618 * 23 22 21 40 40 H 1.08999 * 109.36506 * 224.19868 * 23 22 21 41 41 H 1.09004 * 109.68053 * 51.51955 * 25 24 23 42 42 H 1.08995 * 109.68255 * 172.03211 * 25 24 23 43 43 H 1.09003 * 109.44717 * 283.42884 * 26 21 20 44 44 H 1.08993 * 109.45267 * 43.35923 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4556 0.1959 -2.2875 7 6 2.5577 -0.2228 -3.5872 8 1 2.3425 -1.2499 -3.8422 9 6 2.9368 0.6733 -4.5773 10 7 3.1986 1.9251 -4.2667 11 14 3.0754 0.1023 -6.3505 12 1 1.7691 0.2846 -7.0328 13 1 4.1142 0.9019 -7.0482 14 1 3.4531 -1.3335 -6.3800 15 6 3.2877 -1.5143 -0.6923 16 6 2.8145 -1.8794 0.7369 17 7 2.0300 -0.7141 1.1840 18 6 1.8037 -0.3645 2.4658 19 8 1.1401 0.6190 2.7181 20 6 2.3751 -1.1954 3.5856 21 6 1.9796 -0.5942 4.9096 22 6 0.9243 -1.0528 5.5141 23 6 0.4417 -0.5164 6.8318 24 8 1.4690 0.2587 7.4532 25 6 2.0376 1.2403 6.5777 26 6 2.8245 0.5095 5.4839 27 1 -0.3633 0.5194 0.8867 28 1 -0.3633 0.5083 -0.8932 29 1 -0.3633 -1.0276 0.0064 30 1 2.6486 1.1185 -2.0586 31 1 3.4639 2.5513 -4.9585 32 1 4.1654 -0.8689 -0.6602 33 1 3.4859 -2.4111 -1.2792 34 1 3.6716 -2.0338 1.3924 35 1 2.1891 -2.7719 0.7149 36 1 1.9880 -2.2120 3.5176 37 1 3.4621 -1.2145 3.5058 38 1 0.3700 -1.8544 5.0488 39 1 -0.4346 0.1106 6.6676 40 1 0.1719 -1.3475 7.4834 41 1 1.2428 1.8354 6.1278 42 1 2.7085 1.8894 7.1403 43 1 3.7348 0.0862 5.9085 44 1 3.0860 1.2145 4.6949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986856189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:53 Heat of formation + Delta-G solvation = -74.565692 kcal Electronic energy + Delta-G solvation = -23987.662251 eV Core-core repulsion = 20518.535490 eV Total energy + Delta-G solvation = -3469.126761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38385 -40.25334 -38.77172 -35.91488 -35.66531 -33.43354 -32.32325 -32.02821 -31.13250 -29.57888 -26.85733 -25.55839 -24.86115 -24.61029 -23.46794 -21.63662 -20.14522 -19.11001 -18.98151 -18.04985 -17.51718 -17.19563 -17.11459 -16.50305 -16.16944 -15.86347 -15.53018 -15.42372 -14.91472 -14.65841 -14.38189 -14.17770 -14.00177 -13.64466 -13.57847 -13.31106 -13.27671 -13.12568 -12.93136 -12.85712 -12.64357 -12.52871 -12.21966 -12.18071 -12.07030 -11.72098 -11.55621 -11.51638 -10.96187 -10.86197 -10.61628 -9.78798 -9.64712 -9.03320 -7.94605 -5.24682 1.07305 1.49022 1.50435 1.58670 1.65415 2.06896 2.57289 2.93013 3.36988 3.54933 3.66481 3.75939 3.77312 3.88304 4.02104 4.08622 4.18636 4.25998 4.35555 4.40702 4.41778 4.46220 4.52505 4.54328 4.58577 4.66139 4.69208 4.74193 4.80148 4.88520 4.94490 4.99073 5.04113 5.20407 5.23828 5.34859 5.46470 5.51762 5.54824 5.86424 6.15041 6.25736 6.60975 7.18821 7.32062 8.04328 8.27916 9.29008 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037877 B = 0.002899 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.056487 B = 9655.978249 C = 9766.991608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.041 0.959 4 C 0.170 3.830 5 H 0.069 0.931 6 N -0.731 5.731 7 C -0.236 4.236 8 H 0.084 0.916 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.290 1.290 13 H -0.300 1.300 14 H -0.264 1.264 15 C -0.149 4.149 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.523 3.477 19 O -0.580 6.580 20 C -0.093 4.093 21 C -0.107 4.107 22 C -0.194 4.194 23 C 0.087 3.913 24 O -0.395 6.395 25 C 0.058 3.942 26 C -0.116 4.116 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.370 0.630 31 H 0.250 0.750 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.062 0.938 40 H 0.123 0.877 41 H 0.045 0.955 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 -11.031 20.835 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.059 0.941 4 C 0.060 3.940 5 H 0.087 0.913 6 N -0.370 5.370 7 C -0.367 4.367 8 H 0.101 0.899 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.802 3.198 12 H -0.217 1.217 13 H -0.226 1.226 14 H -0.189 1.189 15 C -0.189 4.189 16 C -0.017 4.017 17 N -0.345 5.345 18 C 0.314 3.686 19 O -0.460 6.460 20 C -0.132 4.132 21 C -0.108 4.108 22 C -0.212 4.212 23 C 0.011 3.989 24 O -0.314 6.314 25 C -0.018 4.018 26 C -0.153 4.153 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.202 0.798 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.141 0.859 41 H 0.063 0.937 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.043 -10.647 21.076 23.701 hybrid contribution 0.067 0.826 -1.708 1.898 sum -1.976 -9.822 19.368 21.805 Atomic orbital electron populations 1.21918 0.94427 1.02319 1.01440 1.21565 0.94690 0.95328 0.85549 0.94086 1.21441 0.95026 0.91065 0.86451 0.91335 1.42532 1.81372 1.09335 1.03747 1.19613 1.36913 0.95380 0.84835 0.89862 1.25582 1.03211 0.95855 1.02211 1.69829 1.54787 1.04273 1.33362 0.85141 0.76774 0.77752 0.80088 1.21683 1.22649 1.18895 1.23377 0.98873 1.01199 0.95484 1.22547 0.95936 0.87938 0.95274 1.48684 1.52305 1.29123 1.04408 1.20916 0.79911 0.85220 0.82587 1.90673 1.41916 1.29610 1.83773 1.20805 1.03813 0.99841 0.88787 1.20596 0.97666 0.97750 0.94738 1.22898 0.97589 1.02191 0.98516 1.21569 0.89632 0.95400 0.92334 1.88065 1.54343 1.50451 1.38589 1.22734 0.96991 0.90361 0.91739 1.21063 0.99090 0.96720 0.98472 0.93016 0.92646 0.91225 0.79794 0.94120 0.92688 0.89299 0.87962 0.88742 0.85708 0.86274 0.85480 0.92020 0.85938 0.93695 0.86842 0.88656 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.10 71.98 0.66 -4.11 16 2 C 0.13 4.67 3.21 45.34 0.15 4.82 16 3 H 0.04 1.72 7.69 -2.39 -0.02 1.71 16 4 C 0.17 6.26 3.12 46.18 0.14 6.41 16 5 H 0.07 2.48 7.83 -2.39 -0.02 2.46 16 6 N -0.73 -35.68 5.25 -317.34 -1.67 -37.34 16 7 C -0.24 -12.51 9.98 84.03 0.84 -11.67 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 10 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 11 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 14 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 15 C -0.15 -4.39 6.77 31.99 0.22 -4.18 16 16 C 0.10 2.20 6.69 86.86 0.58 2.78 16 17 N -0.61 -17.04 3.07 -788.03 -2.42 -19.46 16 18 C 0.52 14.58 7.63 87.65 0.67 15.25 16 19 O -0.58 -21.05 15.06 -3.06 -0.05 -21.10 16 20 C -0.09 -1.70 4.78 29.10 0.14 -1.56 16 21 C -0.11 -2.19 4.40 -15.53 -0.07 -2.25 16 22 C -0.19 -3.66 9.54 26.55 0.25 -3.40 16 23 C 0.09 1.53 7.05 71.09 0.50 2.03 16 24 O -0.40 -8.44 10.84 -148.98 -1.61 -10.06 16 25 C 0.06 1.15 6.90 72.08 0.50 1.65 16 26 C -0.12 -2.31 6.10 29.85 0.18 -2.13 16 27 H 0.05 1.82 6.87 -2.39 -0.02 1.80 16 28 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.37 20.12 7.51 -92.71 -0.70 19.42 16 31 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 1.54 7.49 -2.39 -0.02 1.52 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.12 1.60 7.87 -2.39 -0.02 1.58 16 37 H 0.12 1.70 7.83 -2.38 -0.02 1.68 16 38 H 0.13 2.00 7.83 -2.91 -0.02 1.98 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 0.99 8.10 -2.38 -0.02 0.97 16 42 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -70.23 355.48 2.07 -68.16 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.29 Total: 31.82 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.22 Total: -0.19 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.80 Total: -115.68 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.66 Total: -31.15 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.23 2.07 -68.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986856189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.404 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds