Wall clock time and date at job start Tue Mar 31 2020 07:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.70211 * 2 1 4 4 C 1.53194 * 109.58498 * 120.36220 * 2 1 3 5 5 H 1.09005 * 109.52042 * 294.38624 * 4 2 1 6 6 N 1.46497 * 109.50027 * 54.46331 * 4 2 1 7 7 C 1.34781 * 119.99897 * 204.83925 * 6 4 2 8 8 O 1.21738 * 120.00016 * 359.97438 * 7 6 4 9 9 C 1.41796 * 119.99867 * 180.02562 * 7 6 4 10 10 C 1.33455 * 118.78344 * 180.02562 * 9 7 6 11 11 O 1.34352 * 123.07512 * 180.40968 * 10 9 7 12 12 C 1.45363 * 117.47691 * 343.64502 * 11 10 9 13 13 C 1.53482 * 108.25965 * 47.49978 * 12 11 10 14 14 C 1.50412 * 118.78611 * 0.02562 * 9 7 6 15 15 C 1.53041 * 109.31192 * 174.41873 * 4 2 1 16 16 C 1.53037 * 109.53709 * 298.62910 * 15 4 2 17 17 C 1.53194 * 109.31312 * 61.36492 * 16 15 4 18 18 N 1.46926 * 108.77771 * 305.36738 * 17 16 15 19 19 C 1.36936 * 120.63288 * 233.60644 * 18 17 16 20 20 H 1.07998 * 120.00020 * 150.17168 * 19 18 17 21 21 C 1.38819 * 119.99493 * 330.17991 * 19 18 17 22 22 N 1.31612 * 120.00049 * 344.48617 * 21 19 18 23 23 Si 1.86799 * 119.99688 * 164.48580 * 21 19 18 24 24 H 1.48508 * 109.46929 * 59.99984 * 23 21 19 25 25 H 1.48497 * 109.47226 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47301 * 299.99842 * 23 21 19 27 27 H 1.09003 * 109.46619 * 299.64901 * 1 2 3 28 28 H 1.08998 * 109.46951 * 59.63642 * 1 2 3 29 29 H 1.08996 * 109.47404 * 179.64466 * 1 2 3 30 30 H 0.96996 * 120.00096 * 24.83913 * 6 4 2 31 31 H 1.07997 * 118.46483 * 0.39504 * 10 9 7 32 32 H 1.09001 * 109.71594 * 287.80745 * 12 11 10 33 33 H 1.09003 * 109.70268 * 167.19207 * 12 11 10 34 34 H 1.08997 * 109.70766 * 177.59576 * 13 12 11 35 35 H 1.09002 * 109.69889 * 56.97659 * 13 12 11 36 36 H 1.09007 * 109.45873 * 42.31790 * 14 9 7 37 37 H 1.09012 * 109.43908 * 282.36911 * 14 9 7 38 38 H 1.08995 * 109.46055 * 58.65051 * 15 4 2 39 39 H 1.09003 * 109.45744 * 178.61018 * 15 4 2 40 40 H 1.08999 * 109.49903 * 181.31792 * 16 15 4 41 41 H 1.08998 * 109.50098 * 301.38562 * 16 15 4 42 42 H 1.09005 * 109.58600 * 65.15189 * 17 16 15 43 43 H 1.08994 * 109.59258 * 185.43341 * 17 16 15 44 44 H 0.97008 * 120.00197 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.7660 -0.1675 2.1371 6 7 1.4513 -2.0680 1.3070 7 6 1.3312 -2.6978 2.4926 8 8 1.7154 -2.1546 3.5121 9 6 0.7585 -3.9936 2.5522 10 6 0.6509 -4.5946 3.7389 11 8 0.1301 -5.8234 3.8939 12 6 -0.6532 -6.3634 2.7949 13 6 0.1314 -6.1475 1.4936 14 6 0.2946 -4.6399 1.2757 15 6 3.5675 -0.8482 1.1700 16 6 3.9568 -1.6660 -0.0636 17 6 3.4649 -0.9472 -1.3238 18 7 2.0225 -0.6996 -1.1945 19 6 1.1535 -1.1130 -2.1688 20 1 0.1395 -1.3799 -1.9101 21 6 1.5761 -1.1892 -3.4889 22 7 2.6868 -0.5885 -3.8599 23 14 0.5683 -2.1441 -4.7385 24 1 -0.7922 -1.5560 -4.8307 25 1 1.2291 -2.0722 -6.0664 26 1 0.4664 -3.5629 -4.3121 27 1 -0.3633 0.5084 0.8932 28 1 -0.3633 0.5195 -0.8867 29 1 -0.3634 -1.0276 -0.0064 30 1 1.1455 -2.5010 0.4947 31 1 0.9990 -4.0688 4.6156 32 1 -1.6108 -5.8459 2.7368 33 1 -0.8197 -7.4292 2.9512 34 1 -0.4163 -6.5827 0.6577 35 1 1.1126 -6.6153 1.5742 36 1 1.0306 -4.4638 0.4912 37 1 -0.6624 -4.2105 0.9786 38 1 4.0062 0.1470 1.0992 39 1 3.9378 -1.3451 2.0668 40 1 5.0411 -1.7699 -0.1038 41 1 3.4986 -2.6532 -0.0051 42 1 3.9903 0.0018 -1.4318 43 1 3.6539 -1.5708 -2.1975 44 1 2.9820 -0.6414 -4.7825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993116823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:13 Heat of formation + Delta-G solvation = -45.965884 kcal Electronic energy + Delta-G solvation = -25389.482688 eV Core-core repulsion = 21921.596108 eV Total energy + Delta-G solvation = -3467.886580 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56637 -39.26001 -37.52423 -34.34341 -33.78937 -32.33237 -31.76323 -31.38913 -29.29328 -26.31964 -25.80357 -25.03812 -24.20241 -22.11857 -21.15857 -20.65198 -18.96028 -18.56599 -17.81053 -16.49274 -16.15790 -15.81055 -15.34339 -14.93039 -14.71395 -14.54593 -14.07598 -13.93479 -13.53667 -13.38069 -13.26765 -13.06008 -12.81756 -12.64372 -12.47095 -11.82942 -11.40524 -11.25473 -11.19084 -11.05389 -10.98046 -10.75936 -10.69771 -10.60106 -10.51247 -10.12193 -10.00627 -9.64729 -9.44214 -9.28330 -8.60557 -8.51043 -8.25499 -6.67425 -5.82859 -3.28171 1.52941 3.12237 3.32292 3.38362 3.39658 3.71093 3.92672 4.43064 4.54216 4.60780 4.78598 5.06014 5.13675 5.29649 5.31674 5.32515 5.46605 5.52462 5.62820 5.68229 5.79010 5.82191 5.95598 6.00319 6.10607 6.15352 6.23597 6.25098 6.37891 6.45376 6.56459 6.70443 6.72346 6.81022 6.96054 6.99482 7.16105 7.23238 7.38173 7.65480 7.75753 8.16160 8.40841 8.76738 9.16754 9.79905 10.38038 11.25091 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.005638 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.604255 B = 4965.085510 C = 6038.554336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.134 3.866 5 H 0.075 0.925 6 N -0.698 5.698 7 C 0.564 3.436 8 O -0.576 6.576 9 C -0.303 4.303 10 C 0.144 3.856 11 O -0.315 6.315 12 C 0.053 3.947 13 C -0.156 4.156 14 C -0.077 4.077 15 C -0.120 4.120 16 C -0.140 4.140 17 C 0.172 3.828 18 N -0.585 5.585 19 C -0.256 4.256 20 H 0.069 0.931 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.407 0.593 31 H 0.178 0.822 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.018 0.982 43 H 0.084 0.916 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 -8.843 10.361 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.027 3.973 5 H 0.093 0.907 6 N -0.349 5.349 7 C 0.355 3.645 8 O -0.460 6.460 9 C -0.308 4.308 10 C 0.076 3.924 11 O -0.226 6.226 12 C -0.021 4.021 13 C -0.193 4.193 14 C -0.115 4.115 15 C -0.159 4.159 16 C -0.179 4.179 17 C 0.047 3.953 18 N -0.309 5.309 19 C -0.386 4.386 20 H 0.086 0.914 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.729 3.271 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.245 0.755 31 H 0.195 0.805 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.103 0.897 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.335 -8.575 10.998 14.604 hybrid contribution -0.539 -0.511 -1.491 1.666 sum -4.874 -9.085 9.507 14.024 Atomic orbital electron populations 1.21771 0.95710 1.01377 1.00346 1.20732 0.93305 0.93926 0.86882 0.94382 1.21489 0.92830 0.83377 0.99561 0.90723 1.45932 1.61366 1.18441 1.09125 1.16589 0.78712 0.85350 0.83888 1.90747 1.52554 1.68319 1.34355 1.20162 1.15345 0.99386 0.95863 1.22892 0.88576 0.82883 0.98018 1.86246 1.64186 1.29468 1.42725 1.23531 0.93461 0.99669 0.85426 1.22177 1.01875 0.97395 0.97884 1.20304 1.02216 0.93885 0.95056 1.21760 0.95655 1.00299 0.98174 1.22133 0.98832 0.99564 0.97356 1.20776 0.83212 0.97115 0.94244 1.44133 1.03061 1.64898 1.18809 1.19089 0.95142 1.38198 0.86158 0.91363 1.25100 0.97790 0.99385 0.96967 1.70013 1.23999 1.43475 1.16793 0.86435 0.79665 0.80144 0.80857 1.20945 1.21718 1.21066 0.94236 0.91862 0.92864 0.75513 0.80535 0.90957 0.87623 0.89538 0.90420 0.89656 0.90608 0.92065 0.93134 0.93559 0.92930 0.96431 0.89734 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 7.72 37.16 0.29 -2.17 16 2 C 0.16 3.17 3.20 -67.59 -0.22 2.95 16 3 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 4 C 0.13 2.46 2.32 -67.81 -0.16 2.30 16 5 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 6 N -0.70 -12.10 3.38 -56.53 -0.19 -12.29 16 7 C 0.56 9.68 7.50 -14.90 -0.11 9.57 16 8 O -0.58 -11.36 15.58 5.15 0.08 -11.28 16 9 C -0.30 -4.28 5.70 -105.08 -0.60 -4.88 16 10 C 0.14 1.85 10.46 29.06 0.30 2.15 16 11 O -0.32 -3.61 10.48 -14.89 -0.16 -3.76 16 12 C 0.05 0.46 7.15 37.41 0.27 0.73 16 13 C -0.16 -1.47 6.23 -26.38 -0.16 -1.64 16 14 C -0.08 -0.94 5.08 -27.92 -0.14 -1.08 16 15 C -0.12 -2.20 5.58 -26.69 -0.15 -2.35 16 16 C -0.14 -2.69 5.93 -26.61 -0.16 -2.85 16 17 C 0.17 3.93 5.28 -3.71 -0.02 3.92 16 18 N -0.59 -13.42 2.64 -164.77 -0.44 -13.86 16 19 C -0.26 -6.37 8.58 -15.06 -0.13 -6.50 16 20 H 0.07 1.64 6.23 -52.49 -0.33 1.32 16 21 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 22 N -0.90 -24.98 11.23 55.49 0.62 -24.35 16 23 Si 0.90 20.57 29.58 -169.99 -5.03 15.54 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 29 H 0.05 0.96 6.37 -51.93 -0.33 0.63 16 30 H 0.41 7.17 5.88 -40.82 -0.24 6.93 16 31 H 0.18 2.25 7.21 -52.49 -0.38 1.87 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.14 7.15 -51.93 -0.37 0.77 16 37 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 1.03 7.53 -51.93 -0.39 0.64 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 2.16 6.15 -51.93 -0.32 1.84 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -29.08 339.52 -8.00 -37.08 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.93 Total: 7.57 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -1.07 Total: 0.24 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.00 Total: -50.50 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.08 Total: -15.05 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.08 -8.00 -37.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993116823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.889 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds