Wall clock time and date at job start Tue Mar 31 2020 07:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.70211 * 2 1 4 4 C 1.53194 * 109.58498 * 120.36220 * 2 1 3 5 5 H 1.09005 * 109.52042 * 294.38624 * 4 2 1 6 6 N 1.46497 * 109.50027 * 54.46331 * 4 2 1 7 7 C 1.34781 * 119.99897 * 204.83925 * 6 4 2 8 8 O 1.21738 * 120.00016 * 359.97438 * 7 6 4 9 9 C 1.41796 * 119.99867 * 180.02562 * 7 6 4 10 10 C 1.33455 * 118.78344 * 180.02562 * 9 7 6 11 11 O 1.34352 * 123.07512 * 180.40968 * 10 9 7 12 12 C 1.45363 * 117.47691 * 343.64502 * 11 10 9 13 13 C 1.53482 * 108.25965 * 47.49978 * 12 11 10 14 14 C 1.50412 * 118.78611 * 0.02562 * 9 7 6 15 15 C 1.53041 * 109.31192 * 174.41873 * 4 2 1 16 16 C 1.53037 * 109.53709 * 298.62910 * 15 4 2 17 17 C 1.53194 * 109.31312 * 61.36492 * 16 15 4 18 18 N 1.46926 * 108.77771 * 305.36738 * 17 16 15 19 19 C 1.36936 * 120.63288 * 233.60644 * 18 17 16 20 20 H 1.07998 * 120.00020 * 150.17168 * 19 18 17 21 21 C 1.38819 * 119.99493 * 330.17991 * 19 18 17 22 22 N 1.31612 * 120.00049 * 344.48617 * 21 19 18 23 23 Si 1.86799 * 119.99688 * 164.48580 * 21 19 18 24 24 H 1.48508 * 109.46929 * 59.99984 * 23 21 19 25 25 H 1.48497 * 109.47226 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47301 * 299.99842 * 23 21 19 27 27 H 1.09003 * 109.46619 * 299.64901 * 1 2 3 28 28 H 1.08998 * 109.46951 * 59.63642 * 1 2 3 29 29 H 1.08996 * 109.47404 * 179.64466 * 1 2 3 30 30 H 0.96996 * 120.00096 * 24.83913 * 6 4 2 31 31 H 1.07997 * 118.46483 * 0.39504 * 10 9 7 32 32 H 1.09001 * 109.71594 * 287.80745 * 12 11 10 33 33 H 1.09003 * 109.70268 * 167.19207 * 12 11 10 34 34 H 1.08997 * 109.70766 * 177.59576 * 13 12 11 35 35 H 1.09002 * 109.69889 * 56.97659 * 13 12 11 36 36 H 1.09007 * 109.45873 * 42.31790 * 14 9 7 37 37 H 1.09012 * 109.43908 * 282.36911 * 14 9 7 38 38 H 1.08995 * 109.46055 * 58.65051 * 15 4 2 39 39 H 1.09003 * 109.45744 * 178.61018 * 15 4 2 40 40 H 1.08999 * 109.49903 * 181.31792 * 16 15 4 41 41 H 1.08998 * 109.50098 * 301.38562 * 16 15 4 42 42 H 1.09005 * 109.58600 * 65.15189 * 17 16 15 43 43 H 1.08994 * 109.59258 * 185.43341 * 17 16 15 44 44 H 0.97008 * 120.00197 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.7660 -0.1675 2.1371 6 7 1.4513 -2.0680 1.3070 7 6 1.3312 -2.6978 2.4926 8 8 1.7154 -2.1546 3.5121 9 6 0.7585 -3.9936 2.5522 10 6 0.6509 -4.5946 3.7389 11 8 0.1301 -5.8234 3.8939 12 6 -0.6532 -6.3634 2.7949 13 6 0.1314 -6.1475 1.4936 14 6 0.2946 -4.6399 1.2757 15 6 3.5675 -0.8482 1.1700 16 6 3.9568 -1.6660 -0.0636 17 6 3.4649 -0.9472 -1.3238 18 7 2.0225 -0.6996 -1.1945 19 6 1.1535 -1.1130 -2.1688 20 1 0.1395 -1.3799 -1.9101 21 6 1.5761 -1.1892 -3.4889 22 7 2.6868 -0.5885 -3.8599 23 14 0.5683 -2.1441 -4.7385 24 1 -0.7922 -1.5560 -4.8307 25 1 1.2291 -2.0722 -6.0664 26 1 0.4664 -3.5629 -4.3121 27 1 -0.3633 0.5084 0.8932 28 1 -0.3633 0.5195 -0.8867 29 1 -0.3634 -1.0276 -0.0064 30 1 1.1455 -2.5010 0.4947 31 1 0.9990 -4.0688 4.6156 32 1 -1.6108 -5.8459 2.7368 33 1 -0.8197 -7.4292 2.9512 34 1 -0.4163 -6.5827 0.6577 35 1 1.1126 -6.6153 1.5742 36 1 1.0306 -4.4638 0.4912 37 1 -0.6624 -4.2105 0.9786 38 1 4.0062 0.1470 1.0992 39 1 3.9378 -1.3451 2.0668 40 1 5.0411 -1.7699 -0.1038 41 1 3.4986 -2.6532 -0.0051 42 1 3.9903 0.0018 -1.4318 43 1 3.6539 -1.5708 -2.1975 44 1 2.9820 -0.6414 -4.7825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993116823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:13 Heat of formation + Delta-G solvation = -62.744354 kcal Electronic energy + Delta-G solvation = -25390.210257 eV Core-core repulsion = 21921.596108 eV Total energy + Delta-G solvation = -3468.614149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70216 -40.50298 -39.04594 -35.64086 -35.19017 -33.90819 -33.29647 -32.52926 -30.95193 -27.92676 -26.84767 -26.67124 -25.32801 -23.65697 -22.52073 -22.21427 -20.34678 -19.82466 -18.87863 -18.24488 -17.32141 -17.10372 -16.72266 -16.37151 -16.02128 -15.82902 -15.66577 -15.21062 -14.89791 -14.68948 -14.67750 -14.36953 -14.24844 -13.94989 -13.60187 -13.50840 -12.94344 -12.85276 -12.68984 -12.44798 -12.34828 -12.24791 -12.15667 -11.93258 -11.79332 -11.67438 -11.59830 -11.35627 -11.02493 -10.78437 -10.47550 -9.92131 -9.41593 -8.58933 -7.80138 -5.27013 0.43784 1.51341 1.52309 1.58383 2.23107 2.44357 2.55007 2.62943 3.35970 3.60275 3.74635 3.79050 3.96405 4.01065 4.09751 4.22064 4.24820 4.31296 4.39383 4.44379 4.58133 4.59019 4.67059 4.74916 4.79991 4.94925 4.97258 4.99708 5.05741 5.13789 5.13979 5.19967 5.23896 5.26551 5.35298 5.45973 5.55721 5.70834 5.75938 5.81512 6.24929 6.45548 6.79708 7.20731 7.41376 7.90694 8.45172 9.26470 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.005638 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.604255 B = 4965.085510 C = 6038.554336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.156 3.844 3 H 0.030 0.970 4 C 0.142 3.858 5 H 0.077 0.923 6 N -0.697 5.697 7 C 0.564 3.436 8 O -0.606 6.606 9 C -0.325 4.325 10 C 0.167 3.833 11 O -0.318 6.318 12 C 0.049 3.951 13 C -0.151 4.151 14 C -0.076 4.076 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.248 4.248 20 H 0.079 0.921 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.959 3.041 24 H -0.278 1.278 25 H -0.303 1.303 26 H -0.274 1.274 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.407 0.593 31 H 0.176 0.824 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.050 0.950 42 H -0.006 1.006 43 H 0.055 0.945 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.248 -10.654 11.537 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.047 0.953 4 C 0.036 3.964 5 H 0.095 0.905 6 N -0.347 5.347 7 C 0.357 3.643 8 O -0.492 6.492 9 C -0.329 4.329 10 C 0.098 3.902 11 O -0.228 6.228 12 C -0.024 4.024 13 C -0.189 4.189 14 C -0.113 4.113 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.055 3.945 18 N -0.319 5.319 19 C -0.378 4.378 20 H 0.096 0.904 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.788 3.212 24 H -0.204 1.204 25 H -0.230 1.230 26 H -0.200 1.200 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.244 0.756 31 H 0.192 0.808 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.013 0.987 43 H 0.073 0.927 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.941 -10.408 12.195 17.098 hybrid contribution -0.072 0.038 -1.761 1.763 sum -6.012 -10.370 10.434 15.892 Atomic orbital electron populations 1.21679 0.94230 1.01648 1.00755 1.20851 0.94545 0.93382 0.86285 0.95250 1.21282 0.92782 0.83943 0.98437 0.90534 1.45870 1.61491 1.17985 1.09349 1.16974 0.78112 0.86138 0.83102 1.90727 1.54057 1.69298 1.35126 1.20069 1.17130 0.98460 0.97279 1.22878 0.86837 0.82998 0.97457 1.86254 1.63972 1.28433 1.44159 1.23862 0.93142 1.01455 0.83963 1.22175 1.02179 0.95274 0.99226 1.20286 1.01676 0.95819 0.93528 1.21709 0.95760 1.00368 0.97484 1.21941 0.99606 0.98958 0.95905 1.20552 0.83429 0.95712 0.94832 1.44300 1.02871 1.65382 1.19302 1.19430 0.95567 1.36453 0.86380 0.90356 1.25790 0.98950 1.00810 0.98818 1.70177 1.25916 1.45586 1.16518 0.85473 0.78247 0.79377 0.78118 1.20380 1.23032 1.19981 0.91909 0.93361 0.92570 0.75580 0.80767 0.89808 0.84575 0.87425 0.90930 0.91394 0.90287 0.91582 0.92846 0.92098 0.93133 0.98745 0.92692 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 7.72 71.98 0.56 -3.88 16 2 C 0.16 6.15 3.20 44.98 0.14 6.29 16 3 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.14 5.10 2.32 45.07 0.10 5.21 16 5 H 0.08 2.76 7.58 -2.38 -0.02 2.74 16 6 N -0.70 -23.50 3.38 -450.97 -1.53 -25.02 16 7 C 0.56 18.78 7.50 85.12 0.64 19.42 16 8 O -0.61 -23.38 15.58 -4.47 -0.07 -23.45 16 9 C -0.32 -8.68 5.70 -20.16 -0.11 -8.80 16 10 C 0.17 3.98 10.46 66.74 0.70 4.67 16 11 O -0.32 -6.36 10.48 -76.21 -0.80 -7.16 16 12 C 0.05 0.67 7.15 72.14 0.52 1.18 16 13 C -0.15 -2.42 6.23 30.82 0.19 -2.23 16 14 C -0.08 -1.71 5.08 29.82 0.15 -1.56 16 15 C -0.11 -4.10 5.58 30.62 0.17 -3.93 16 16 C -0.12 -4.78 5.93 30.67 0.18 -4.60 16 17 C 0.18 8.42 5.28 86.36 0.46 8.88 16 18 N -0.59 -27.41 2.64 -675.21 -1.78 -29.19 16 19 C -0.25 -12.31 8.58 84.04 0.72 -11.59 16 20 H 0.08 3.68 6.23 -2.91 -0.02 3.66 16 21 C -0.05 -2.54 4.94 84.86 0.42 -2.12 16 22 N -0.94 -53.38 11.23 21.65 0.24 -53.14 16 23 Si 0.96 42.43 29.58 68.60 2.03 44.46 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.83 7.67 -2.39 -0.02 1.82 16 29 H 0.06 1.93 6.37 -2.39 -0.02 1.92 16 30 H 0.41 13.96 5.88 -92.71 -0.54 13.42 16 31 H 0.18 4.20 7.21 -2.91 -0.02 4.18 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.75 7.15 -2.38 -0.02 1.73 16 37 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.05 1.95 7.53 -2.39 -0.02 1.94 16 42 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 43 H 0.05 2.90 6.15 -2.39 -0.01 2.88 16 44 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -62.57 339.52 3.38 -59.19 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.45 Total: 27.35 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 4.83 Total: 6.96 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -3.07 Total: -107.35 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.87 Total: -30.61 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -62.57 3.38 -59.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993116823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.557 kcal (2) G-P(sol) polarization free energy of solvation -62.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds