Wall clock time and date at job start Tue Mar 31 2020 07:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.69720 * 2 1 4 4 C 1.53193 * 109.58444 * 239.64377 * 2 1 3 5 5 H 1.08996 * 109.52136 * 65.61395 * 4 2 1 6 6 N 1.46500 * 109.49706 * 305.52679 * 4 2 1 7 7 C 1.34778 * 119.99679 * 155.16681 * 6 4 2 8 8 O 1.21739 * 120.00126 * 359.97438 * 7 6 4 9 9 C 1.41796 * 119.99999 * 180.02562 * 7 6 4 10 10 C 1.33454 * 118.78723 * 180.02562 * 9 7 6 11 11 O 1.34354 * 123.07828 * 180.39154 * 10 9 7 12 12 C 1.45351 * 117.48354 * 343.66880 * 11 10 9 13 13 C 1.53491 * 108.26448 * 47.47783 * 12 11 10 14 14 C 1.50422 * 118.78519 * 359.97438 * 9 7 6 15 15 C 1.53049 * 109.30851 * 185.57740 * 4 2 1 16 16 C 1.53043 * 109.53777 * 61.36449 * 15 4 2 17 17 C 1.53192 * 109.31383 * 298.63623 * 16 15 4 18 18 N 1.46928 * 109.58327 * 120.35155 * 2 1 3 19 19 C 1.36934 * 120.63531 * 353.37747 * 18 2 1 20 20 H 1.07997 * 119.99633 * 29.51923 * 19 18 2 21 21 C 1.38807 * 120.00151 * 209.51765 * 19 18 2 22 22 N 1.31622 * 120.00107 * 15.62965 * 21 19 18 23 23 Si 1.86800 * 120.00199 * 195.62500 * 21 19 18 24 24 H 1.48502 * 109.46776 * 94.72589 * 23 21 19 25 25 H 1.48501 * 109.47331 * 214.72223 * 23 21 19 26 26 H 1.48496 * 109.47071 * 334.72537 * 23 21 19 27 27 H 1.09002 * 109.47399 * 180.35636 * 1 2 3 28 28 H 1.08999 * 109.47569 * 300.35321 * 1 2 3 29 29 H 1.09002 * 109.47208 * 60.35855 * 1 2 3 30 30 H 0.96995 * 120.00401 * 335.15913 * 6 4 2 31 31 H 1.07993 * 118.46136 * 0.40954 * 10 9 7 32 32 H 1.09000 * 109.71171 * 167.16915 * 12 11 10 33 33 H 1.08996 * 109.70734 * 287.74690 * 12 11 10 34 34 H 1.08995 * 109.70465 * 56.98421 * 13 12 11 35 35 H 1.08998 * 109.70717 * 177.56849 * 13 12 11 36 36 H 1.08995 * 109.45498 * 42.32117 * 14 9 7 37 37 H 1.09005 * 109.43904 * 282.37272 * 14 9 7 38 38 H 1.08999 * 109.45785 * 181.38592 * 15 4 2 39 39 H 1.08996 * 109.45937 * 301.36223 * 15 4 2 40 40 H 1.09004 * 109.49548 * 58.58561 * 16 15 4 41 41 H 1.08999 * 109.49741 * 178.64985 * 16 15 4 42 42 H 1.09000 * 109.58727 * 174.42377 * 17 16 15 43 43 H 1.08998 * 109.58272 * 294.84685 * 17 16 15 44 44 H 0.96998 * 120.00369 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7294 -1.2454 5 1 1.7660 -0.1673 -2.1371 6 7 1.4513 -2.0680 -1.3070 7 6 1.3314 -2.6978 -2.4926 8 8 1.7146 -2.1542 -3.5122 9 6 0.7578 -3.9932 -2.5524 10 6 0.6512 -4.5947 -3.7389 11 8 0.1154 -5.8167 -3.8960 12 6 -0.0284 -6.6437 -2.7093 13 6 -0.6637 -5.7907 -1.6027 14 6 0.2928 -4.6391 -1.2759 15 6 3.5675 -0.8480 -1.1701 16 6 3.9569 -1.6657 0.0636 17 6 3.4650 -0.9469 1.3238 18 7 2.0225 -0.6995 1.1946 19 6 1.1537 -1.1126 2.1690 20 1 0.1382 -1.3747 1.9113 21 6 1.5782 -1.1947 3.4880 22 7 2.6908 -0.5976 3.8597 23 14 0.5705 -2.1523 4.7358 24 1 1.1015 -3.5349 4.8444 25 1 0.6560 -1.4839 6.0591 26 1 -0.8470 -2.1996 4.2958 27 1 -0.3634 -1.0276 0.0064 28 1 -0.3634 0.5193 0.8868 29 1 -0.3634 0.5083 -0.8932 30 1 1.1457 -2.5010 -0.4947 31 1 1.0128 -4.0750 -4.6137 32 1 -0.6709 -7.4960 -2.9308 33 1 0.9510 -6.9961 -2.3859 34 1 -1.6167 -5.3904 -1.9485 35 1 -0.8223 -6.4009 -0.7135 36 1 -0.2240 -3.9009 -0.6628 37 1 1.1538 -5.0254 -0.7303 38 1 3.9378 -1.3448 -2.0668 39 1 4.0061 0.1473 -1.0990 40 1 3.4983 -2.6528 0.0053 41 1 5.0412 -1.7700 0.1035 42 1 3.6518 -1.5717 2.1972 43 1 3.9902 0.0020 1.4317 44 1 2.9873 -0.6546 4.7815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993116831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:16 Heat of formation + Delta-G solvation = -45.998861 kcal Electronic energy + Delta-G solvation = -25388.422608 eV Core-core repulsion = 21920.534598 eV Total energy + Delta-G solvation = -3467.888010 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56777 -39.26213 -37.52789 -34.34572 -33.79482 -32.33388 -31.76652 -31.39113 -29.29425 -26.32177 -25.80624 -25.04520 -24.20569 -22.11724 -21.16654 -20.65510 -18.96249 -18.56585 -17.81235 -16.50718 -16.16453 -15.81201 -15.30094 -14.98722 -14.74254 -14.49543 -14.10406 -13.88758 -13.54545 -13.44025 -13.24993 -13.03697 -12.85469 -12.60027 -12.49842 -11.83624 -11.39665 -11.25792 -11.20872 -11.05679 -10.99038 -10.76955 -10.70654 -10.58990 -10.50404 -10.10938 -10.00664 -9.64478 -9.44632 -9.28642 -8.60720 -8.51639 -8.25615 -6.68397 -5.83089 -3.28297 1.52821 3.12026 3.31413 3.38652 3.40551 3.71312 3.92254 4.42752 4.53662 4.60637 4.78145 5.06128 5.13376 5.29642 5.31444 5.32143 5.46186 5.52354 5.62436 5.67655 5.78796 5.81558 5.95337 5.99896 6.09261 6.15528 6.23355 6.24956 6.37839 6.45251 6.56065 6.70069 6.71940 6.80674 6.95748 6.99257 7.15983 7.23025 7.38195 7.65319 7.75913 8.15954 8.40401 8.76547 9.16444 9.79607 10.37452 11.24805 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015193 B = 0.005644 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.495362 B = 4959.667165 C = 6037.945959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.134 3.866 5 H 0.075 0.925 6 N -0.698 5.698 7 C 0.564 3.436 8 O -0.576 6.576 9 C -0.303 4.303 10 C 0.144 3.856 11 O -0.315 6.315 12 C 0.053 3.947 13 C -0.156 4.156 14 C -0.077 4.077 15 C -0.120 4.120 16 C -0.140 4.140 17 C 0.172 3.828 18 N -0.586 5.586 19 C -0.255 4.255 20 H 0.070 0.930 21 C 0.006 3.994 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.279 1.279 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.407 0.593 31 H 0.178 0.822 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.018 0.982 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 -9.134 -10.315 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.051 3.949 3 H 0.056 0.944 4 C 0.027 3.973 5 H 0.093 0.907 6 N -0.349 5.349 7 C 0.355 3.645 8 O -0.460 6.460 9 C -0.308 4.308 10 C 0.076 3.924 11 O -0.226 6.226 12 C -0.021 4.021 13 C -0.193 4.193 14 C -0.114 4.114 15 C -0.159 4.159 16 C -0.179 4.179 17 C 0.046 3.954 18 N -0.309 5.309 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.729 3.271 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.245 0.755 31 H 0.195 0.805 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.036 0.964 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.768 -8.830 -10.969 14.576 hybrid contribution -0.421 -0.561 1.509 1.664 sum -4.189 -9.390 -9.460 13.972 Atomic orbital electron populations 1.21772 0.95696 1.01373 1.00368 1.20733 0.93308 0.93936 0.86880 0.94372 1.21489 0.92823 0.83379 0.99568 0.90703 1.45929 1.61391 1.18441 1.09101 1.16588 0.78708 0.85355 0.83886 1.90747 1.52553 1.68355 1.34316 1.20163 1.15221 0.98960 0.96414 1.22890 0.87670 0.83394 0.98415 1.86243 1.75524 1.25193 1.35666 1.23529 1.01706 0.92547 0.84330 1.22182 0.99669 0.98034 0.99428 1.20304 0.99183 0.97297 0.94634 1.21762 0.95659 1.00302 0.98159 1.22135 0.98817 0.99575 0.97360 1.20790 0.83195 0.97128 0.94273 1.44153 1.03085 1.64907 1.18790 1.19157 0.95023 1.38047 0.86210 0.91251 1.25094 0.97805 0.99463 0.96951 1.70028 1.23930 1.43608 1.16742 0.86337 0.79806 0.79760 0.81220 1.21569 1.21834 1.20402 0.92891 0.91857 0.94207 0.75514 0.80534 0.87621 0.90938 0.90440 0.89537 0.89807 0.90498 0.93152 0.92064 0.92924 0.93567 0.89668 0.96422 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 7.72 37.16 0.29 -2.18 16 2 C 0.16 3.16 3.20 -67.60 -0.22 2.95 16 3 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.13 2.46 2.32 -67.81 -0.16 2.30 16 5 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 6 N -0.70 -12.08 3.38 -56.53 -0.19 -12.27 16 7 C 0.56 9.67 7.50 -14.90 -0.11 9.56 16 8 O -0.58 -11.35 15.58 5.15 0.08 -11.27 16 9 C -0.30 -4.27 5.70 -105.07 -0.60 -4.87 16 10 C 0.14 1.85 10.46 29.06 0.30 2.15 16 11 O -0.32 -3.60 10.48 -14.90 -0.16 -3.76 16 12 C 0.05 0.46 7.15 37.41 0.27 0.73 16 13 C -0.16 -1.45 6.23 -26.36 -0.16 -1.61 16 14 C -0.08 -0.93 5.09 -27.90 -0.14 -1.07 16 15 C -0.12 -2.19 5.58 -26.68 -0.15 -2.34 16 16 C -0.14 -2.68 5.93 -26.61 -0.16 -2.84 16 17 C 0.17 3.92 5.28 -3.71 -0.02 3.90 16 18 N -0.59 -13.42 2.64 -164.77 -0.44 -13.85 16 19 C -0.25 -6.33 8.59 -15.06 -0.13 -6.46 16 20 H 0.07 1.67 6.22 -52.49 -0.33 1.35 16 21 C 0.01 0.16 4.94 -17.43 -0.09 0.07 16 22 N -0.90 -24.97 11.21 55.49 0.62 -24.35 16 23 Si 0.90 20.58 29.58 -169.99 -5.03 15.55 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.05 0.96 6.37 -51.93 -0.33 0.63 16 28 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.41 7.15 5.87 -40.82 -0.24 6.91 16 31 H 0.18 2.25 7.21 -52.49 -0.38 1.87 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.08 7.15 -51.93 -0.37 0.71 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.03 7.53 -51.93 -0.39 0.64 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 2.18 6.12 -51.93 -0.32 1.86 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -29.11 339.48 -8.00 -37.11 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.93 Total: 7.45 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.07 Total: 0.28 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.00 Total: -50.48 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.08 Total: -15.03 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.11 -8.00 -37.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993116831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.890 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds