Wall clock time and date at job start Tue Mar 31 2020 07:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.69720 * 2 1 4 4 C 1.53193 * 109.58444 * 239.64377 * 2 1 3 5 5 H 1.08996 * 109.52136 * 65.61395 * 4 2 1 6 6 N 1.46500 * 109.49706 * 305.52679 * 4 2 1 7 7 C 1.34778 * 119.99679 * 155.16681 * 6 4 2 8 8 O 1.21739 * 120.00126 * 359.97438 * 7 6 4 9 9 C 1.41796 * 119.99999 * 180.02562 * 7 6 4 10 10 C 1.33454 * 118.78723 * 180.02562 * 9 7 6 11 11 O 1.34354 * 123.07828 * 180.39154 * 10 9 7 12 12 C 1.45351 * 117.48354 * 343.66880 * 11 10 9 13 13 C 1.53491 * 108.26448 * 47.47783 * 12 11 10 14 14 C 1.50422 * 118.78519 * 359.97438 * 9 7 6 15 15 C 1.53049 * 109.30851 * 185.57740 * 4 2 1 16 16 C 1.53043 * 109.53777 * 61.36449 * 15 4 2 17 17 C 1.53192 * 109.31383 * 298.63623 * 16 15 4 18 18 N 1.46928 * 109.58327 * 120.35155 * 2 1 3 19 19 C 1.36934 * 120.63531 * 353.37747 * 18 2 1 20 20 H 1.07997 * 119.99633 * 29.51923 * 19 18 2 21 21 C 1.38807 * 120.00151 * 209.51765 * 19 18 2 22 22 N 1.31622 * 120.00107 * 15.62965 * 21 19 18 23 23 Si 1.86800 * 120.00199 * 195.62500 * 21 19 18 24 24 H 1.48502 * 109.46776 * 94.72589 * 23 21 19 25 25 H 1.48501 * 109.47331 * 214.72223 * 23 21 19 26 26 H 1.48496 * 109.47071 * 334.72537 * 23 21 19 27 27 H 1.09002 * 109.47399 * 180.35636 * 1 2 3 28 28 H 1.08999 * 109.47569 * 300.35321 * 1 2 3 29 29 H 1.09002 * 109.47208 * 60.35855 * 1 2 3 30 30 H 0.96995 * 120.00401 * 335.15913 * 6 4 2 31 31 H 1.07993 * 118.46136 * 0.40954 * 10 9 7 32 32 H 1.09000 * 109.71171 * 167.16915 * 12 11 10 33 33 H 1.08996 * 109.70734 * 287.74690 * 12 11 10 34 34 H 1.08995 * 109.70465 * 56.98421 * 13 12 11 35 35 H 1.08998 * 109.70717 * 177.56849 * 13 12 11 36 36 H 1.08995 * 109.45498 * 42.32117 * 14 9 7 37 37 H 1.09005 * 109.43904 * 282.37272 * 14 9 7 38 38 H 1.08999 * 109.45785 * 181.38592 * 15 4 2 39 39 H 1.08996 * 109.45937 * 301.36223 * 15 4 2 40 40 H 1.09004 * 109.49548 * 58.58561 * 16 15 4 41 41 H 1.08999 * 109.49741 * 178.64985 * 16 15 4 42 42 H 1.09000 * 109.58727 * 174.42377 * 17 16 15 43 43 H 1.08998 * 109.58272 * 294.84685 * 17 16 15 44 44 H 0.96998 * 120.00369 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7294 -1.2454 5 1 1.7660 -0.1673 -2.1371 6 7 1.4513 -2.0680 -1.3070 7 6 1.3314 -2.6978 -2.4926 8 8 1.7146 -2.1542 -3.5122 9 6 0.7578 -3.9932 -2.5524 10 6 0.6512 -4.5947 -3.7389 11 8 0.1154 -5.8167 -3.8960 12 6 -0.0284 -6.6437 -2.7093 13 6 -0.6637 -5.7907 -1.6027 14 6 0.2928 -4.6391 -1.2759 15 6 3.5675 -0.8480 -1.1701 16 6 3.9569 -1.6657 0.0636 17 6 3.4650 -0.9469 1.3238 18 7 2.0225 -0.6995 1.1946 19 6 1.1537 -1.1126 2.1690 20 1 0.1382 -1.3747 1.9113 21 6 1.5782 -1.1947 3.4880 22 7 2.6908 -0.5976 3.8597 23 14 0.5705 -2.1523 4.7358 24 1 1.1015 -3.5349 4.8444 25 1 0.6560 -1.4839 6.0591 26 1 -0.8470 -2.1996 4.2958 27 1 -0.3634 -1.0276 0.0064 28 1 -0.3634 0.5193 0.8868 29 1 -0.3634 0.5083 -0.8932 30 1 1.1457 -2.5010 -0.4947 31 1 1.0128 -4.0750 -4.6137 32 1 -0.6709 -7.4960 -2.9308 33 1 0.9510 -6.9961 -2.3859 34 1 -1.6167 -5.3904 -1.9485 35 1 -0.8223 -6.4009 -0.7135 36 1 -0.2240 -3.9009 -0.6628 37 1 1.1538 -5.0254 -0.7303 38 1 3.9378 -1.3448 -2.0668 39 1 4.0061 0.1473 -1.0990 40 1 3.4983 -2.6528 0.0053 41 1 5.0412 -1.7700 0.1035 42 1 3.6518 -1.5717 2.1972 43 1 3.9902 0.0020 1.4317 44 1 2.9873 -0.6546 4.7815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993116831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:15 Heat of formation + Delta-G solvation = -62.788704 kcal Electronic energy + Delta-G solvation = -25389.150670 eV Core-core repulsion = 21920.534598 eV Total energy + Delta-G solvation = -3468.616073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70224 -40.50370 -39.04804 -35.64373 -35.19121 -33.90482 -33.29968 -32.52818 -30.95209 -27.92879 -26.85385 -26.67348 -25.32830 -23.65376 -22.52234 -22.21654 -20.35007 -19.82124 -18.87761 -18.25346 -17.32793 -17.11781 -16.71341 -16.33133 -16.07086 -15.85395 -15.63509 -15.07439 -15.03622 -14.75021 -14.60792 -14.36771 -14.26076 -13.94324 -13.57521 -13.53366 -12.94861 -12.87788 -12.70366 -12.45955 -12.31911 -12.24900 -12.15906 -11.90126 -11.79366 -11.67381 -11.59477 -11.35118 -11.02647 -10.78682 -10.48907 -9.92146 -9.41703 -8.59798 -7.80359 -5.27101 0.43736 1.49781 1.51967 1.59606 2.22001 2.46467 2.54148 2.62104 3.35627 3.60033 3.74571 3.79298 3.96558 4.01019 4.09557 4.22191 4.24808 4.31864 4.38818 4.44741 4.56674 4.59719 4.66807 4.74957 4.80266 4.94723 4.97323 5.00035 5.05858 5.13387 5.14362 5.20517 5.23662 5.26507 5.35149 5.45465 5.56123 5.70936 5.75983 5.81622 6.24826 6.45364 6.79646 7.20518 7.41323 7.90427 8.44611 9.26338 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015193 B = 0.005644 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.495362 B = 4959.667165 C = 6037.945959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.156 3.844 3 H 0.030 0.970 4 C 0.142 3.858 5 H 0.076 0.924 6 N -0.697 5.697 7 C 0.564 3.436 8 O -0.606 6.606 9 C -0.325 4.325 10 C 0.167 3.833 11 O -0.317 6.317 12 C 0.048 3.952 13 C -0.150 4.150 14 C -0.076 4.076 15 C -0.114 4.114 16 C -0.125 4.125 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.049 4.049 22 N -0.936 5.936 23 Si 0.958 3.042 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.265 1.265 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.407 0.593 31 H 0.176 0.824 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.055 0.945 43 H -0.006 1.006 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 -11.014 -11.469 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.048 0.952 4 C 0.035 3.965 5 H 0.094 0.906 6 N -0.347 5.347 7 C 0.357 3.643 8 O -0.492 6.492 9 C -0.329 4.329 10 C 0.098 3.902 11 O -0.228 6.228 12 C -0.025 4.025 13 C -0.187 4.187 14 C -0.113 4.113 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.054 3.946 18 N -0.319 5.319 19 C -0.376 4.376 20 H 0.097 0.903 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.788 3.212 24 H -0.215 1.215 25 H -0.232 1.232 26 H -0.189 1.189 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.244 0.756 31 H 0.192 0.808 32 H 0.155 0.845 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.013 0.987 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.157 -10.732 -12.146 17.009 hybrid contribution -0.014 0.009 1.773 1.773 sum -5.172 -10.723 -10.373 15.790 Atomic orbital electron populations 1.21681 0.94276 1.01606 1.00768 1.20850 0.94499 0.93409 0.86307 0.95222 1.21282 0.92825 0.83937 0.98409 0.90562 1.45867 1.61513 1.17987 1.09326 1.16974 0.78098 0.86151 0.83102 1.90727 1.54061 1.69330 1.35088 1.20071 1.16951 0.98084 0.97821 1.22878 0.85761 0.83722 0.97831 1.86252 1.74609 1.24532 1.37381 1.23859 1.02919 0.92630 0.83116 1.22179 0.98726 0.97268 1.00570 1.20291 0.99588 0.97976 0.93462 1.21709 0.95699 1.00377 0.97512 1.21942 0.99616 0.98987 0.95855 1.20568 0.83381 0.95735 0.94895 1.44319 1.02910 1.65382 1.19267 1.19481 0.95424 1.36268 0.86427 0.90329 1.25776 0.98966 1.00896 0.98781 1.70186 1.25822 1.45714 1.16519 0.85377 0.79193 0.78177 0.78464 1.21504 1.23171 1.18929 0.92652 0.93328 0.91927 0.75578 0.80766 0.84506 0.90132 0.90541 0.87463 0.90963 0.90855 0.92805 0.91601 0.93059 0.92070 0.92628 0.98740 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 7.72 71.98 0.56 -3.90 16 2 C 0.16 6.14 3.20 44.97 0.14 6.29 16 3 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.14 5.09 2.32 45.07 0.10 5.19 16 5 H 0.08 2.75 7.58 -2.39 -0.02 2.73 16 6 N -0.70 -23.45 3.38 -450.96 -1.53 -24.98 16 7 C 0.56 18.76 7.50 85.12 0.64 19.39 16 8 O -0.61 -23.36 15.58 -4.47 -0.07 -23.43 16 9 C -0.32 -8.67 5.70 -20.16 -0.11 -8.78 16 10 C 0.17 3.97 10.46 66.74 0.70 4.67 16 11 O -0.32 -6.35 10.48 -76.23 -0.80 -7.15 16 12 C 0.05 0.66 7.15 72.15 0.52 1.18 16 13 C -0.15 -2.34 6.23 30.84 0.19 -2.15 16 14 C -0.08 -1.70 5.09 29.84 0.15 -1.55 16 15 C -0.11 -4.06 5.58 30.63 0.17 -3.89 16 16 C -0.12 -4.74 5.93 30.67 0.18 -4.56 16 17 C 0.18 8.37 5.28 86.36 0.46 8.82 16 18 N -0.59 -27.37 2.64 -675.23 -1.79 -29.15 16 19 C -0.25 -12.18 8.59 84.03 0.72 -11.46 16 20 H 0.08 3.71 6.22 -2.91 -0.02 3.69 16 21 C -0.05 -2.57 4.94 84.86 0.42 -2.15 16 22 N -0.94 -53.34 11.21 21.65 0.24 -53.10 16 23 Si 0.96 42.49 29.58 68.60 2.03 44.52 16 24 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 27 H 0.05 1.92 6.37 -2.39 -0.02 1.91 16 28 H 0.05 1.85 7.66 -2.39 -0.02 1.83 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.41 13.92 5.87 -92.71 -0.54 13.38 16 31 H 0.18 4.20 7.21 -2.91 -0.02 4.18 16 32 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.76 7.15 -2.39 -0.02 1.75 16 37 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.96 7.53 -2.38 -0.02 1.94 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 2.93 6.12 -2.39 -0.01 2.91 16 43 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -62.53 339.48 3.38 -59.15 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.45 Total: 27.05 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 4.84 Total: 7.09 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -3.07 Total: -107.23 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.87 Total: -30.58 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -62.53 3.38 -59.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993116831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.640 kcal (2) G-P(sol) polarization free energy of solvation -62.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds