Wall clock time and date at job start Tue Mar 31 2020 07:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70010 * 2 1 4 4 C 1.53199 * 109.58712 * 120.35422 * 2 1 3 5 5 H 1.08994 * 109.49183 * 54.43714 * 4 2 1 6 6 N 1.46498 * 109.49740 * 294.37331 * 4 2 1 7 7 C 1.34769 * 119.99986 * 155.06493 * 6 4 2 8 8 O 1.21739 * 120.00113 * 359.97438 * 7 6 4 9 9 C 1.41803 * 120.00266 * 180.02562 * 7 6 4 10 10 C 1.33453 * 118.78789 * 180.02562 * 9 7 6 11 11 O 1.34350 * 123.07808 * 180.66811 * 10 9 7 12 12 C 1.45468 * 117.39866 * 343.20657 * 11 10 9 13 13 C 1.53482 * 108.15345 * 47.83967 * 12 11 10 14 14 C 1.50418 * 118.78321 * 359.97414 * 9 7 6 15 15 C 1.53038 * 109.33640 * 174.40691 * 4 2 1 16 16 C 1.53039 * 109.53984 * 298.64824 * 15 4 2 17 17 C 1.53197 * 109.31188 * 61.36965 * 16 15 4 18 18 N 1.46927 * 108.77379 * 305.36494 * 17 16 15 19 19 C 1.36941 * 120.63430 * 233.60848 * 18 17 16 20 20 H 1.07997 * 120.00600 * 151.56821 * 19 18 17 21 21 C 1.38816 * 119.99616 * 331.57310 * 19 18 17 22 22 N 1.31622 * 119.99986 * 160.51749 * 21 19 18 23 23 Si 1.86804 * 120.00057 * 340.51683 * 21 19 18 24 24 H 1.48498 * 109.47035 * 94.85963 * 23 21 19 25 25 H 1.48493 * 109.47106 * 214.86166 * 23 21 19 26 26 H 1.48500 * 109.47053 * 334.86347 * 23 21 19 27 27 H 1.09005 * 109.47047 * 299.64205 * 1 2 3 28 28 H 1.08996 * 109.47355 * 59.64465 * 1 2 3 29 29 H 1.09002 * 109.47317 * 179.64730 * 1 2 3 30 30 H 0.97004 * 119.99919 * 335.06966 * 6 4 2 31 31 H 1.08000 * 118.46088 * 0.37884 * 10 9 7 32 32 H 1.09007 * 109.87557 * 288.11985 * 12 11 10 33 33 H 1.08998 * 109.68000 * 167.45327 * 12 11 10 34 34 H 1.08996 * 109.70836 * 177.46710 * 13 12 11 35 35 H 1.08996 * 109.73723 * 56.86845 * 13 12 11 36 36 H 1.09008 * 109.45566 * 282.36169 * 14 9 7 37 37 H 1.09000 * 109.45647 * 42.32440 * 14 9 7 38 38 H 1.08996 * 109.46284 * 58.67285 * 15 4 2 39 39 H 1.08994 * 109.45707 * 178.63163 * 15 4 2 40 40 H 1.08993 * 109.50010 * 181.31868 * 16 15 4 41 41 H 1.08994 * 109.50128 * 301.42325 * 16 15 4 42 42 H 1.09005 * 109.58836 * 65.14834 * 17 16 15 43 43 H 1.08996 * 109.59117 * 185.57932 * 17 16 15 44 44 H 0.96997 * 119.99766 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2455 5 1 1.6025 -1.7250 1.2916 6 7 1.6706 0.0267 2.4435 7 6 1.5485 -0.6046 3.6279 8 8 1.7478 -1.8032 3.7022 9 6 1.1869 0.1272 4.7875 10 6 1.0735 -0.5223 5.9479 11 8 0.7235 0.0824 7.0954 12 6 0.8242 1.5328 7.1456 13 6 0.1616 2.1021 5.8837 14 6 0.9466 1.6069 4.6645 15 6 3.5675 -0.8486 1.1706 16 6 3.9569 -1.6664 -0.0630 17 6 3.4657 -0.9472 -1.3233 18 7 2.0233 -0.6992 -1.1945 19 6 1.1544 -1.1122 -2.1690 20 1 0.1339 -1.3572 -1.9143 21 6 1.5854 -1.2161 -3.4845 22 7 0.9120 -1.9540 -4.3414 23 14 3.1213 -0.3084 -4.0385 24 1 4.2919 -1.2181 -3.9527 25 1 2.9489 0.1454 -5.4419 26 1 3.3440 0.8689 -3.1613 27 1 -0.3633 0.5083 0.8932 28 1 -0.3634 0.5193 -0.8867 29 1 -0.3634 -1.0277 -0.0063 30 1 1.5114 0.9818 2.3843 31 1 1.2677 -1.5845 5.9643 32 1 1.8724 1.8306 7.1765 33 1 0.3098 1.9060 8.0311 34 1 0.1829 3.1913 5.9168 35 1 -0.8703 1.7564 5.8219 36 1 1.9032 2.1270 4.6125 37 1 0.3744 1.8077 3.7587 38 1 4.0066 0.1465 1.1000 39 1 3.9373 -1.3457 2.0673 40 1 5.0411 -1.7708 -0.1029 41 1 3.4978 -2.6532 -0.0051 42 1 3.9914 0.0016 -1.4310 43 1 3.6524 -1.5719 -2.1968 44 1 1.2134 -2.0269 -5.2604 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993116833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:19 Heat of formation + Delta-G solvation = -40.361142 kcal Electronic energy + Delta-G solvation = -24713.467445 eV Core-core repulsion = 21245.823904 eV Total energy + Delta-G solvation = -3467.643541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76370 -39.39824 -37.83488 -34.68489 -34.16160 -32.70094 -31.90385 -31.56801 -29.81611 -26.49574 -26.04095 -24.98523 -24.38125 -22.53166 -21.07056 -20.73625 -19.76404 -18.89106 -17.93969 -16.67004 -16.39027 -15.97466 -15.57599 -15.27884 -14.98492 -14.60337 -14.39757 -14.21745 -13.64345 -13.61199 -13.51131 -13.38298 -13.14694 -12.83265 -12.38034 -11.93392 -11.82106 -11.63961 -11.31548 -11.28936 -11.26677 -10.97109 -10.88200 -10.64637 -10.40028 -10.30462 -9.93712 -9.75238 -9.49394 -9.41519 -8.83498 -8.64853 -8.50172 -6.96272 -5.92824 -3.30928 1.32551 2.92809 3.33660 3.48488 3.49107 3.51292 3.57587 4.29872 4.37556 4.54091 4.54587 4.82940 4.92168 4.92912 5.08527 5.15307 5.26810 5.31023 5.41407 5.48502 5.53169 5.60501 5.69881 5.75957 5.81097 5.92404 6.02453 6.04858 6.22880 6.26286 6.32052 6.45598 6.50628 6.54874 6.68818 6.73976 6.84677 6.97282 6.98702 7.09271 7.80310 7.97176 8.35803 8.50875 8.94346 9.73373 10.09505 11.22599 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031425 B = 0.003698 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.808104 B = 7570.612253 C = 7795.596141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.171 3.829 3 H 0.031 0.969 4 C 0.130 3.870 5 H 0.090 0.910 6 N -0.717 5.717 7 C 0.569 3.431 8 O -0.561 6.561 9 C -0.311 4.311 10 C 0.152 3.848 11 O -0.313 6.313 12 C 0.052 3.948 13 C -0.157 4.157 14 C -0.075 4.075 15 C -0.117 4.117 16 C -0.132 4.132 17 C 0.124 3.876 18 N -0.597 5.597 19 C -0.260 4.260 20 H 0.092 0.908 21 C 0.025 3.975 22 N -0.909 5.909 23 Si 0.882 3.118 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.270 1.270 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.394 0.606 31 H 0.180 0.820 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 9.944 21.155 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 H 0.048 0.952 4 C 0.025 3.975 5 H 0.108 0.892 6 N -0.368 5.368 7 C 0.359 3.641 8 O -0.443 6.443 9 C -0.316 4.316 10 C 0.084 3.916 11 O -0.224 6.224 12 C -0.022 4.022 13 C -0.194 4.194 14 C -0.112 4.112 15 C -0.156 4.156 16 C -0.172 4.172 17 C -0.001 4.001 18 N -0.322 5.322 19 C -0.388 4.388 20 H 0.110 0.890 21 C -0.174 4.174 22 N -0.552 5.552 23 Si 0.713 3.287 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.195 1.195 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.197 0.803 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.417 8.980 21.189 23.057 hybrid contribution 0.960 1.137 -0.746 1.665 sum 2.376 10.117 20.443 22.933 Atomic orbital electron populations 1.21819 0.94898 1.02326 1.00325 1.20570 0.93895 0.93269 0.85860 0.95169 1.21692 0.94753 0.97224 0.83875 0.89187 1.46002 1.70401 1.11960 1.08407 1.16548 0.77148 0.87042 0.83352 1.90806 1.52475 1.14836 1.86148 1.20111 1.18949 0.97619 0.94890 1.22970 0.86997 0.98053 0.83559 1.86302 1.79850 1.22579 1.33632 1.23557 1.01646 0.77491 0.99486 1.22190 1.00659 1.01815 0.94762 1.20286 1.00588 0.91492 0.98826 1.21761 0.95798 0.99858 0.98186 1.22000 0.99473 1.00104 0.95648 1.21396 0.85061 0.97110 0.96543 1.44344 1.02163 1.65887 1.19789 1.18931 0.95489 1.38606 0.85797 0.89021 1.25277 0.97597 0.98736 0.95773 1.69823 1.41239 1.39191 1.04912 0.86951 0.83508 0.81285 0.76987 1.21692 1.23277 1.19503 0.94136 0.91546 0.92184 0.77113 0.80348 0.90874 0.87478 0.89564 0.90247 0.90739 0.90045 0.92783 0.92555 0.92583 0.91478 0.95617 0.90911 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.83 37.16 0.29 -2.21 16 2 C 0.17 3.30 3.03 -67.59 -0.21 3.09 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.30 1.99 -67.81 -0.14 2.16 16 5 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 6 N -0.72 -10.26 4.49 -56.53 -0.25 -10.51 16 7 C 0.57 8.55 7.50 -14.90 -0.11 8.44 16 8 O -0.56 -10.55 15.58 5.15 0.08 -10.46 16 9 C -0.31 -3.57 5.70 -105.07 -0.60 -4.17 16 10 C 0.15 1.66 10.46 29.06 0.30 1.96 16 11 O -0.31 -2.98 10.48 -14.89 -0.16 -3.14 16 12 C 0.05 0.33 7.15 37.41 0.27 0.60 16 13 C -0.16 -0.98 6.23 -26.36 -0.16 -1.15 16 14 C -0.07 -0.61 5.09 -27.90 -0.14 -0.76 16 15 C -0.12 -2.01 5.46 -26.69 -0.15 -2.15 16 16 C -0.13 -2.47 6.08 -26.61 -0.16 -2.63 16 17 C 0.12 2.72 4.19 -3.71 -0.02 2.70 16 18 N -0.60 -13.99 2.76 -164.76 -0.45 -14.44 16 19 C -0.26 -7.11 9.07 -15.06 -0.14 -7.25 16 20 H 0.09 2.65 6.36 -52.49 -0.33 2.32 16 21 C 0.03 0.72 5.24 -17.43 -0.09 0.63 16 22 N -0.91 -27.75 13.97 55.49 0.78 -26.97 16 23 Si 0.88 22.26 24.35 -169.99 -4.14 18.12 16 24 H -0.29 -7.11 6.72 56.52 0.38 -6.73 16 25 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 26 H -0.27 -6.64 6.44 56.52 0.36 -6.27 16 27 H 0.04 0.61 7.79 -51.93 -0.40 0.20 16 28 H 0.07 1.30 7.65 -51.93 -0.40 0.90 16 29 H 0.06 1.21 7.41 -51.93 -0.38 0.82 16 30 H 0.39 4.61 6.71 -40.82 -0.27 4.33 16 31 H 0.18 2.01 7.21 -52.49 -0.38 1.63 16 32 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.08 0.65 7.15 -51.93 -0.37 0.28 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.03 0.55 6.95 -51.93 -0.36 0.19 16 43 H 0.07 1.74 4.61 -51.93 -0.24 1.50 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -32.78 336.07 -7.09 -39.87 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.96 Total: 3.21 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.04 Total: -0.73 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.07 Total: -51.93 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.08 Total: -13.60 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.78 -7.09 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993116833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.491 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds