Wall clock time and date at job start Tue Mar 31 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70010 * 2 1 4 4 C 1.53199 * 109.58712 * 120.35422 * 2 1 3 5 5 H 1.08994 * 109.49183 * 54.43714 * 4 2 1 6 6 N 1.46498 * 109.49740 * 294.37331 * 4 2 1 7 7 C 1.34769 * 119.99986 * 155.06493 * 6 4 2 8 8 O 1.21739 * 120.00113 * 359.97438 * 7 6 4 9 9 C 1.41803 * 120.00266 * 180.02562 * 7 6 4 10 10 C 1.33453 * 118.78789 * 180.02562 * 9 7 6 11 11 O 1.34350 * 123.07808 * 180.66811 * 10 9 7 12 12 C 1.45468 * 117.39866 * 343.20657 * 11 10 9 13 13 C 1.53482 * 108.15345 * 47.83967 * 12 11 10 14 14 C 1.50418 * 118.78321 * 359.97414 * 9 7 6 15 15 C 1.53038 * 109.33640 * 174.40691 * 4 2 1 16 16 C 1.53039 * 109.53984 * 298.64824 * 15 4 2 17 17 C 1.53197 * 109.31188 * 61.36965 * 16 15 4 18 18 N 1.46927 * 108.77379 * 305.36494 * 17 16 15 19 19 C 1.36941 * 120.63430 * 233.60848 * 18 17 16 20 20 H 1.07997 * 120.00600 * 151.56821 * 19 18 17 21 21 C 1.38816 * 119.99616 * 331.57310 * 19 18 17 22 22 N 1.31622 * 119.99986 * 160.51749 * 21 19 18 23 23 Si 1.86804 * 120.00057 * 340.51683 * 21 19 18 24 24 H 1.48498 * 109.47035 * 94.85963 * 23 21 19 25 25 H 1.48493 * 109.47106 * 214.86166 * 23 21 19 26 26 H 1.48500 * 109.47053 * 334.86347 * 23 21 19 27 27 H 1.09005 * 109.47047 * 299.64205 * 1 2 3 28 28 H 1.08996 * 109.47355 * 59.64465 * 1 2 3 29 29 H 1.09002 * 109.47317 * 179.64730 * 1 2 3 30 30 H 0.97004 * 119.99919 * 335.06966 * 6 4 2 31 31 H 1.08000 * 118.46088 * 0.37884 * 10 9 7 32 32 H 1.09007 * 109.87557 * 288.11985 * 12 11 10 33 33 H 1.08998 * 109.68000 * 167.45327 * 12 11 10 34 34 H 1.08996 * 109.70836 * 177.46710 * 13 12 11 35 35 H 1.08996 * 109.73723 * 56.86845 * 13 12 11 36 36 H 1.09008 * 109.45566 * 282.36169 * 14 9 7 37 37 H 1.09000 * 109.45647 * 42.32440 * 14 9 7 38 38 H 1.08996 * 109.46284 * 58.67285 * 15 4 2 39 39 H 1.08994 * 109.45707 * 178.63163 * 15 4 2 40 40 H 1.08993 * 109.50010 * 181.31868 * 16 15 4 41 41 H 1.08994 * 109.50128 * 301.42325 * 16 15 4 42 42 H 1.09005 * 109.58836 * 65.14834 * 17 16 15 43 43 H 1.08996 * 109.59117 * 185.57932 * 17 16 15 44 44 H 0.96997 * 119.99766 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2455 5 1 1.6025 -1.7250 1.2916 6 7 1.6706 0.0267 2.4435 7 6 1.5485 -0.6046 3.6279 8 8 1.7478 -1.8032 3.7022 9 6 1.1869 0.1272 4.7875 10 6 1.0735 -0.5223 5.9479 11 8 0.7235 0.0824 7.0954 12 6 0.8242 1.5328 7.1456 13 6 0.1616 2.1021 5.8837 14 6 0.9466 1.6069 4.6645 15 6 3.5675 -0.8486 1.1706 16 6 3.9569 -1.6664 -0.0630 17 6 3.4657 -0.9472 -1.3233 18 7 2.0233 -0.6992 -1.1945 19 6 1.1544 -1.1122 -2.1690 20 1 0.1339 -1.3572 -1.9143 21 6 1.5854 -1.2161 -3.4845 22 7 0.9120 -1.9540 -4.3414 23 14 3.1213 -0.3084 -4.0385 24 1 4.2919 -1.2181 -3.9527 25 1 2.9489 0.1454 -5.4419 26 1 3.3440 0.8689 -3.1613 27 1 -0.3633 0.5083 0.8932 28 1 -0.3634 0.5193 -0.8867 29 1 -0.3634 -1.0277 -0.0063 30 1 1.5114 0.9818 2.3843 31 1 1.2677 -1.5845 5.9643 32 1 1.8724 1.8306 7.1765 33 1 0.3098 1.9060 8.0311 34 1 0.1829 3.1913 5.9168 35 1 -0.8703 1.7564 5.8219 36 1 1.9032 2.1270 4.6125 37 1 0.3744 1.8077 3.7587 38 1 4.0066 0.1465 1.1000 39 1 3.9373 -1.3457 2.0673 40 1 5.0411 -1.7708 -0.1029 41 1 3.4978 -2.6532 -0.0051 42 1 3.9914 0.0016 -1.4310 43 1 3.6524 -1.5719 -2.1968 44 1 1.2134 -2.0269 -5.2604 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993116833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:18 Heat of formation + Delta-G solvation = -63.448236 kcal Electronic energy + Delta-G solvation = -24714.468576 eV Core-core repulsion = 21245.823904 eV Total energy + Delta-G solvation = -3468.644672 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.71459 -40.51286 -39.29887 -35.99934 -35.20356 -34.30558 -33.48189 -32.61252 -31.38042 -28.05644 -26.77650 -26.65285 -25.50921 -23.85868 -22.43162 -22.07969 -21.29008 -19.81883 -18.87133 -18.39075 -17.65497 -17.19296 -16.90458 -16.41887 -16.15662 -16.00672 -15.71804 -15.27380 -15.09743 -14.95267 -14.79257 -14.52776 -14.26173 -13.97476 -13.66750 -13.58102 -13.48268 -12.94909 -12.91597 -12.56821 -12.45586 -12.24129 -12.04445 -11.90871 -11.76535 -11.64146 -11.57380 -11.42856 -11.30291 -10.91387 -10.65980 -10.04675 -9.45416 -8.90805 -8.12021 -5.46464 0.40421 1.33413 1.43289 1.52674 2.16844 2.36657 2.45434 2.47931 3.08888 3.33692 3.74996 3.78027 3.86525 3.94907 3.99464 4.06834 4.22072 4.24499 4.30566 4.37322 4.44771 4.50107 4.61728 4.65250 4.71661 4.77598 4.86094 4.89415 4.97316 5.01397 5.02593 5.14018 5.15763 5.22147 5.23730 5.28116 5.36806 5.44576 5.62641 5.90880 6.19837 6.23709 6.69004 6.92600 7.36382 7.64891 8.03556 9.07315 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031425 B = 0.003698 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.808104 B = 7570.612253 C = 7795.596141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.168 3.832 3 H 0.057 0.943 4 C 0.144 3.856 5 H 0.051 0.949 6 N -0.705 5.705 7 C 0.566 3.434 8 O -0.607 6.607 9 C -0.322 4.322 10 C 0.163 3.837 11 O -0.321 6.321 12 C 0.044 3.956 13 C -0.152 4.152 14 C -0.075 4.075 15 C -0.110 4.110 16 C -0.126 4.126 17 C 0.118 3.882 18 N -0.613 5.613 19 C -0.243 4.243 20 H 0.061 0.939 21 C -0.036 4.036 22 N -0.961 5.961 23 Si 0.946 3.054 24 H -0.280 1.280 25 H -0.314 1.314 26 H -0.252 1.252 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.411 0.589 31 H 0.167 0.833 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 13.076 23.587 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.062 3.938 3 H 0.075 0.925 4 C 0.037 3.963 5 H 0.069 0.931 6 N -0.357 5.357 7 C 0.359 3.641 8 O -0.492 6.492 9 C -0.327 4.327 10 C 0.094 3.906 11 O -0.231 6.231 12 C -0.029 4.029 13 C -0.189 4.189 14 C -0.112 4.112 15 C -0.148 4.148 16 C -0.166 4.166 17 C -0.006 4.006 18 N -0.338 5.338 19 C -0.372 4.372 20 H 0.079 0.921 21 C -0.231 4.231 22 N -0.607 5.607 23 Si 0.775 3.225 24 H -0.207 1.207 25 H -0.244 1.244 26 H -0.176 1.176 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.249 0.751 31 H 0.184 0.816 32 H 0.103 0.897 33 H 0.150 0.850 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.919 12.176 23.683 26.789 hybrid contribution 0.406 0.125 -1.330 1.396 sum 3.325 12.300 22.353 25.730 Atomic orbital electron populations 1.21732 0.94711 1.00728 1.01397 1.20779 0.94174 0.94099 0.84714 0.92525 1.21250 0.95152 0.95474 0.84455 0.93108 1.45758 1.70213 1.12538 1.07173 1.17065 0.76214 0.86608 0.84210 1.90789 1.54594 1.17009 1.86790 1.20065 1.19954 0.99335 0.93307 1.22850 0.85834 0.97810 0.84072 1.86298 1.79166 1.24901 1.32751 1.23927 1.02947 0.75310 1.00716 1.22195 0.99698 1.03414 0.93603 1.20374 1.01742 0.89079 1.00015 1.21697 0.95051 1.00796 0.97274 1.21915 1.01076 0.98764 0.94837 1.21478 0.84237 0.97747 0.97176 1.44486 1.02533 1.66686 1.20078 1.18857 0.94915 1.36683 0.86760 0.92136 1.25912 1.01212 0.99920 0.96023 1.69966 1.43944 1.41573 1.05224 0.85907 0.80153 0.80469 0.75953 1.20713 1.24364 1.17614 0.90365 0.93091 0.95112 0.75116 0.81645 0.89662 0.84978 0.86792 0.91051 0.89313 0.89729 0.90386 0.92429 0.89596 0.93699 0.93859 0.93307 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.83 71.98 0.56 -4.10 16 2 C 0.17 6.22 3.03 44.97 0.14 6.36 16 3 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.14 4.89 1.99 45.07 0.09 4.98 16 5 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 6 N -0.71 -18.72 4.49 -450.98 -2.02 -20.74 16 7 C 0.57 16.42 7.50 85.12 0.64 17.06 16 8 O -0.61 -23.07 15.58 -4.47 -0.07 -23.14 16 9 C -0.32 -6.79 5.70 -20.15 -0.11 -6.90 16 10 C 0.16 3.37 10.46 66.74 0.70 4.07 16 11 O -0.32 -5.43 10.48 -76.19 -0.80 -6.23 16 12 C 0.04 0.40 7.15 72.14 0.52 0.91 16 13 C -0.15 -1.33 6.23 30.83 0.19 -1.14 16 14 C -0.08 -0.98 5.09 29.84 0.15 -0.82 16 15 C -0.11 -3.48 5.46 30.62 0.17 -3.31 16 16 C -0.13 -4.48 6.08 30.67 0.19 -4.30 16 17 C 0.12 4.97 4.19 86.36 0.36 5.33 16 18 N -0.61 -28.38 2.76 -675.18 -1.86 -30.24 16 19 C -0.24 -13.60 9.07 84.03 0.76 -12.84 16 20 H 0.06 3.70 6.36 -2.91 -0.02 3.68 16 21 C -0.04 -2.13 5.24 84.86 0.45 -1.68 16 22 N -0.96 -60.90 13.97 21.65 0.30 -60.59 16 23 Si 0.95 46.23 24.35 68.60 1.67 47.90 16 24 H -0.28 -13.13 6.72 99.48 0.67 -12.47 16 25 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 26 H -0.25 -11.44 6.44 99.48 0.64 -10.80 16 27 H 0.08 2.20 7.79 -2.38 -0.02 2.18 16 28 H 0.05 1.99 7.65 -2.39 -0.02 1.98 16 29 H 0.03 1.27 7.41 -2.39 -0.02 1.25 16 30 H 0.41 8.19 6.71 -92.71 -0.62 7.56 16 31 H 0.17 3.77 7.21 -2.91 -0.02 3.75 16 32 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 1.04 7.15 -2.39 -0.02 1.02 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.04 1.69 6.95 -2.38 -0.02 1.68 16 43 H 0.05 2.29 4.61 -2.39 -0.01 2.28 16 44 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -74.32 336.07 2.28 -72.04 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.27 Total: 17.40 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 4.79 Total: 3.62 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -3.58 Total: -111.58 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.87 Total: -29.37 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.90 kcal Total: -74.32 2.28 -72.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993116833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.587 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds