Wall clock time and date at job start Tue Mar 31 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.58447 * 2 1 4 4 C 1.53192 * 109.58890 * 120.27971 * 2 1 3 5 5 H 1.09005 * 109.52301 * 294.53685 * 4 2 1 6 6 N 1.46499 * 109.49752 * 54.61559 * 4 2 1 7 7 C 1.34774 * 120.00036 * 204.84198 * 6 4 2 8 8 O 1.21612 * 119.99822 * 359.97438 * 7 6 4 9 9 C 1.47101 * 120.00053 * 180.02562 * 7 6 4 10 10 C 1.32088 * 118.87967 * 179.97438 * 9 7 6 11 11 C 1.50269 * 122.58050 * 180.36824 * 10 9 7 12 12 O 1.42896 * 110.09219 * 344.35637 * 11 10 9 13 13 C 1.43276 * 113.09999 * 50.52550 * 12 11 10 14 14 C 1.50419 * 118.87489 * 359.72653 * 9 7 6 15 15 C 1.53037 * 109.31294 * 174.56928 * 4 2 1 16 16 C 1.53041 * 109.52502 * 298.64138 * 15 4 2 17 17 C 1.53158 * 109.32869 * 61.37272 * 16 15 4 18 18 N 1.46922 * 109.70699 * 239.64519 * 2 1 3 19 19 C 1.36938 * 120.62728 * 6.50292 * 18 2 1 20 20 H 1.08001 * 120.00334 * 330.20595 * 19 18 2 21 21 C 1.38814 * 119.99750 * 150.20019 * 19 18 2 22 22 N 1.31627 * 119.99987 * 344.48217 * 21 19 18 23 23 Si 1.86799 * 119.99883 * 164.47608 * 21 19 18 24 24 H 1.48505 * 109.47105 * 90.00789 * 23 21 19 25 25 H 1.48505 * 109.47268 * 210.00080 * 23 21 19 26 26 H 1.48493 * 109.47507 * 330.00306 * 23 21 19 27 27 H 1.08999 * 109.47087 * 299.71816 * 1 2 3 28 28 H 1.08998 * 109.47461 * 59.72224 * 1 2 3 29 29 H 1.09007 * 109.46798 * 179.71767 * 1 2 3 30 30 H 0.97003 * 120.00023 * 24.83649 * 6 4 2 31 31 H 1.07998 * 118.70554 * 0.39508 * 10 9 7 32 32 H 1.09001 * 109.36365 * 104.54725 * 11 10 9 33 33 H 1.08996 * 109.36669 * 224.29406 * 11 10 9 34 34 H 1.09005 * 109.63709 * 50.85389 * 13 12 11 35 35 H 1.08997 * 109.63516 * 171.26633 * 13 12 11 36 36 H 1.09000 * 109.45799 * 283.37703 * 14 9 7 37 37 H 1.09003 * 109.45527 * 43.31750 * 14 9 7 38 38 H 1.08999 * 109.46331 * 58.65620 * 15 4 2 39 39 H 1.09006 * 109.46102 * 178.63072 * 15 4 2 40 40 H 1.08999 * 109.49652 * 181.31465 * 16 15 4 41 41 H 1.09007 * 109.49885 * 301.40670 * 16 15 4 42 42 H 1.09001 * 109.59348 * 185.56769 * 17 16 15 43 43 H 1.08999 * 109.58901 * 65.14373 * 17 16 15 44 44 H 0.96996 * 119.99377 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2464 5 1 1.7638 -0.1658 2.1375 6 7 1.4542 -2.0675 1.3080 7 6 1.3340 -2.6969 2.4937 8 8 1.7153 -2.1529 3.5123 9 6 0.7426 -4.0424 2.5555 10 6 0.6360 -4.6391 3.7291 11 6 0.0531 -6.0150 3.8873 12 8 -0.6628 -6.3836 2.7068 13 6 0.0969 -6.1950 1.5068 14 6 0.2748 -4.6895 1.2807 15 6 3.5678 -0.8431 1.1730 16 6 3.9601 -1.6605 -0.0600 17 6 3.4686 -0.9435 -1.3210 18 7 2.0254 -0.6990 -1.1936 19 6 1.1585 -1.1152 -2.1684 20 1 0.1447 -1.3841 -1.9107 21 6 1.5826 -1.1915 -3.4880 22 7 2.6924 -0.5884 -3.8584 23 14 0.5785 -2.1501 -4.7378 24 1 -0.4167 -1.2474 -5.3704 25 1 1.4811 -2.7001 -5.7810 26 1 -0.1271 -3.2646 -4.0561 27 1 -0.3633 0.5094 0.8925 28 1 -0.3634 0.5181 -0.8874 29 1 -0.3633 -1.0277 -0.0051 30 1 1.1503 -2.5015 0.4955 31 1 0.9809 -4.1173 4.6095 32 1 0.8571 -6.7304 4.0607 33 1 -0.6279 -6.0234 4.7383 34 1 1.0718 -6.6710 1.6118 35 1 -0.4360 -6.6336 0.6632 36 1 -0.6755 -4.2498 0.9778 37 1 1.0157 -4.5269 0.4979 38 1 4.0045 0.1530 1.1022 39 1 3.9381 -1.3391 2.0703 40 1 5.0447 -1.7622 -0.0991 41 1 3.5035 -2.6486 -0.0018 42 1 3.6577 -1.5683 -2.1939 43 1 3.9920 0.0064 -1.4287 44 1 2.9889 -0.6420 -4.7804 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993224559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:02 Heat of formation + Delta-G solvation = -50.365241 kcal Electronic energy + Delta-G solvation = -25313.062966 eV Core-core repulsion = 21844.985615 eV Total energy + Delta-G solvation = -3468.077351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.21203 -38.97781 -37.54371 -34.02039 -33.75552 -32.40413 -31.74040 -31.07007 -29.41793 -26.59334 -25.86318 -25.03565 -23.88097 -22.31443 -21.19461 -20.69519 -18.75124 -18.41315 -17.56932 -16.55322 -16.27640 -15.56633 -15.31128 -15.08118 -14.85176 -14.71808 -13.96302 -13.80617 -13.68695 -13.38684 -13.17168 -13.00502 -12.73011 -12.63506 -12.48054 -11.87442 -11.61250 -11.30479 -11.25036 -11.02114 -10.89979 -10.72485 -10.65832 -10.55098 -10.16343 -10.11421 -10.05180 -9.69869 -9.43286 -9.32951 -9.15649 -8.57650 -8.46017 -6.71092 -5.85818 -3.31351 1.39282 3.30927 3.38553 3.39353 3.48896 3.52655 3.80298 4.40988 4.62443 4.74085 4.76163 5.08379 5.12999 5.20168 5.27146 5.28853 5.46291 5.52802 5.55214 5.59697 5.66712 5.72138 5.84964 5.93678 6.09585 6.19830 6.22114 6.30445 6.39248 6.48469 6.50249 6.64251 6.64688 6.75014 6.90254 6.91254 6.94483 7.08880 7.33464 7.61413 7.73465 8.00877 8.37681 8.59462 9.13661 9.76605 10.34373 11.22203 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.005611 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.155062 B = 4988.777923 C = 6094.264151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.133 3.867 5 H 0.076 0.924 6 N -0.693 5.693 7 C 0.544 3.456 8 O -0.559 6.559 9 C -0.154 4.154 10 C -0.129 4.129 11 C 0.087 3.913 12 O -0.379 6.379 13 C 0.061 3.939 14 C -0.123 4.123 15 C -0.121 4.121 16 C -0.140 4.140 17 C 0.172 3.828 18 N -0.585 5.585 19 C -0.258 4.258 20 H 0.070 0.930 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.409 0.591 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.018 0.982 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -8.343 10.861 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.057 0.943 4 C 0.026 3.974 5 H 0.094 0.906 6 N -0.343 5.343 7 C 0.331 3.669 8 O -0.440 6.440 9 C -0.157 4.157 10 C -0.149 4.149 11 C 0.011 3.989 12 O -0.298 6.298 13 C -0.016 4.016 14 C -0.161 4.161 15 C -0.159 4.159 16 C -0.179 4.179 17 C 0.046 3.954 18 N -0.309 5.309 19 C -0.387 4.387 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.542 5.542 23 Si 0.728 3.272 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.204 1.204 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.247 0.753 31 H 0.151 0.849 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.036 0.964 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.554 -7.983 11.345 14.106 hybrid contribution -0.158 -0.369 -1.163 1.231 sum -2.712 -8.353 10.182 13.446 Atomic orbital electron populations 1.21779 0.95620 1.01433 1.00469 1.20725 0.93358 0.93962 0.86812 0.94273 1.21561 0.92967 0.83017 0.99831 0.90627 1.45957 1.60933 1.18420 1.09023 1.18388 0.78894 0.85668 0.83909 1.90728 1.51240 1.67437 1.34550 1.21005 1.03027 0.95608 0.96104 1.23605 0.96121 0.96762 0.98365 1.21548 0.96650 0.91855 0.88844 1.88121 1.41066 1.86153 1.14456 1.22696 0.96542 0.94579 0.87735 1.21141 1.03046 0.96367 0.95515 1.21767 0.95467 1.00476 0.98216 1.22137 0.98920 0.99509 0.97350 1.20783 0.83188 0.97186 0.94222 1.44147 1.03046 1.64896 1.18834 1.19122 0.95247 1.38172 0.86163 0.91279 1.25106 0.97768 0.99344 0.96983 1.70028 1.23996 1.43426 1.16778 0.86371 0.79411 0.79988 0.81391 1.21422 1.21649 1.20433 0.94188 0.91738 0.92849 0.75334 0.84876 0.91208 0.87342 0.92507 0.87985 0.89126 0.89051 0.91880 0.93172 0.93453 0.92960 0.89642 0.96356 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.73 37.16 0.29 -2.16 16 2 C 0.16 3.11 3.19 -67.60 -0.22 2.90 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.13 2.38 2.32 -67.81 -0.16 2.22 16 5 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 6 N -0.69 -11.74 3.41 -54.87 -0.19 -11.93 16 7 C 0.54 9.21 7.69 -12.67 -0.10 9.11 16 8 O -0.56 -10.96 15.72 5.27 0.08 -10.88 16 9 C -0.15 -2.16 5.86 -103.09 -0.60 -2.76 16 10 C -0.13 -1.58 9.58 -36.44 -0.35 -1.93 16 11 C 0.09 0.86 7.04 35.80 0.25 1.11 16 12 O -0.38 -4.46 10.83 -35.23 -0.38 -4.84 16 13 C 0.06 0.65 6.89 37.30 0.26 0.90 16 14 C -0.12 -1.51 5.30 -27.88 -0.15 -1.66 16 15 C -0.12 -2.15 5.58 -26.69 -0.15 -2.29 16 16 C -0.14 -2.62 5.93 -26.63 -0.16 -2.78 16 17 C 0.17 3.85 5.28 -3.73 -0.02 3.83 16 18 N -0.59 -13.21 2.64 -164.80 -0.44 -13.65 16 19 C -0.26 -6.33 8.59 -15.06 -0.13 -6.46 16 20 H 0.07 1.65 6.24 -52.49 -0.33 1.32 16 21 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 22 N -0.90 -24.72 11.23 55.49 0.62 -24.09 16 23 Si 0.90 20.40 29.58 -169.99 -5.03 15.37 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.24 7.67 -51.93 -0.40 0.85 16 29 H 0.05 0.95 6.39 -51.93 -0.33 0.62 16 30 H 0.41 7.00 6.07 -40.82 -0.25 6.75 16 31 H 0.13 1.69 7.29 -52.49 -0.38 1.30 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.13 7.30 -51.93 -0.38 0.75 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.99 7.53 -51.92 -0.39 0.60 16 42 H 0.09 2.15 6.14 -51.93 -0.32 1.83 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -29.03 340.70 -8.46 -37.49 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.95 Total: 7.25 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.32 Total: 0.14 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.00 Total: -49.67 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.30 Total: -15.71 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.03 -8.46 -37.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993224559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.877 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds