Wall clock time and date at job start Tue Mar 31 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.58447 * 2 1 4 4 C 1.53192 * 109.58890 * 120.27971 * 2 1 3 5 5 H 1.09005 * 109.52301 * 294.53685 * 4 2 1 6 6 N 1.46499 * 109.49752 * 54.61559 * 4 2 1 7 7 C 1.34774 * 120.00036 * 204.84198 * 6 4 2 8 8 O 1.21612 * 119.99822 * 359.97438 * 7 6 4 9 9 C 1.47101 * 120.00053 * 180.02562 * 7 6 4 10 10 C 1.32088 * 118.87967 * 179.97438 * 9 7 6 11 11 C 1.50269 * 122.58050 * 180.36824 * 10 9 7 12 12 O 1.42896 * 110.09219 * 344.35637 * 11 10 9 13 13 C 1.43276 * 113.09999 * 50.52550 * 12 11 10 14 14 C 1.50419 * 118.87489 * 359.72653 * 9 7 6 15 15 C 1.53037 * 109.31294 * 174.56928 * 4 2 1 16 16 C 1.53041 * 109.52502 * 298.64138 * 15 4 2 17 17 C 1.53158 * 109.32869 * 61.37272 * 16 15 4 18 18 N 1.46922 * 109.70699 * 239.64519 * 2 1 3 19 19 C 1.36938 * 120.62728 * 6.50292 * 18 2 1 20 20 H 1.08001 * 120.00334 * 330.20595 * 19 18 2 21 21 C 1.38814 * 119.99750 * 150.20019 * 19 18 2 22 22 N 1.31627 * 119.99987 * 344.48217 * 21 19 18 23 23 Si 1.86799 * 119.99883 * 164.47608 * 21 19 18 24 24 H 1.48505 * 109.47105 * 90.00789 * 23 21 19 25 25 H 1.48505 * 109.47268 * 210.00080 * 23 21 19 26 26 H 1.48493 * 109.47507 * 330.00306 * 23 21 19 27 27 H 1.08999 * 109.47087 * 299.71816 * 1 2 3 28 28 H 1.08998 * 109.47461 * 59.72224 * 1 2 3 29 29 H 1.09007 * 109.46798 * 179.71767 * 1 2 3 30 30 H 0.97003 * 120.00023 * 24.83649 * 6 4 2 31 31 H 1.07998 * 118.70554 * 0.39508 * 10 9 7 32 32 H 1.09001 * 109.36365 * 104.54725 * 11 10 9 33 33 H 1.08996 * 109.36669 * 224.29406 * 11 10 9 34 34 H 1.09005 * 109.63709 * 50.85389 * 13 12 11 35 35 H 1.08997 * 109.63516 * 171.26633 * 13 12 11 36 36 H 1.09000 * 109.45799 * 283.37703 * 14 9 7 37 37 H 1.09003 * 109.45527 * 43.31750 * 14 9 7 38 38 H 1.08999 * 109.46331 * 58.65620 * 15 4 2 39 39 H 1.09006 * 109.46102 * 178.63072 * 15 4 2 40 40 H 1.08999 * 109.49652 * 181.31465 * 16 15 4 41 41 H 1.09007 * 109.49885 * 301.40670 * 16 15 4 42 42 H 1.09001 * 109.59348 * 185.56769 * 17 16 15 43 43 H 1.08999 * 109.58901 * 65.14373 * 17 16 15 44 44 H 0.96996 * 119.99377 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2464 5 1 1.7638 -0.1658 2.1375 6 7 1.4542 -2.0675 1.3080 7 6 1.3340 -2.6969 2.4937 8 8 1.7153 -2.1529 3.5123 9 6 0.7426 -4.0424 2.5555 10 6 0.6360 -4.6391 3.7291 11 6 0.0531 -6.0150 3.8873 12 8 -0.6628 -6.3836 2.7068 13 6 0.0969 -6.1950 1.5068 14 6 0.2748 -4.6895 1.2807 15 6 3.5678 -0.8431 1.1730 16 6 3.9601 -1.6605 -0.0600 17 6 3.4686 -0.9435 -1.3210 18 7 2.0254 -0.6990 -1.1936 19 6 1.1585 -1.1152 -2.1684 20 1 0.1447 -1.3841 -1.9107 21 6 1.5826 -1.1915 -3.4880 22 7 2.6924 -0.5884 -3.8584 23 14 0.5785 -2.1501 -4.7378 24 1 -0.4167 -1.2474 -5.3704 25 1 1.4811 -2.7001 -5.7810 26 1 -0.1271 -3.2646 -4.0561 27 1 -0.3633 0.5094 0.8925 28 1 -0.3634 0.5181 -0.8874 29 1 -0.3633 -1.0277 -0.0051 30 1 1.1503 -2.5015 0.4955 31 1 0.9809 -4.1173 4.6095 32 1 0.8571 -6.7304 4.0607 33 1 -0.6279 -6.0234 4.7383 34 1 1.0718 -6.6710 1.6118 35 1 -0.4360 -6.6336 0.6632 36 1 -0.6755 -4.2498 0.9778 37 1 1.0157 -4.5269 0.4979 38 1 4.0045 0.1530 1.1022 39 1 3.9381 -1.3391 2.0703 40 1 5.0447 -1.7622 -0.0991 41 1 3.5035 -2.6486 -0.0018 42 1 3.6577 -1.5683 -2.1939 43 1 3.9920 0.0064 -1.4287 44 1 2.9889 -0.6420 -4.7804 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993224559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:02 Heat of formation + Delta-G solvation = -67.541169 kcal Electronic energy + Delta-G solvation = -25313.807770 eV Core-core repulsion = 21844.985615 eV Total energy + Delta-G solvation = -3468.822155 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46066 -40.09365 -38.99429 -35.65085 -34.84362 -33.95660 -33.36689 -32.02795 -31.05382 -28.05522 -27.05218 -26.74865 -24.82550 -23.82760 -22.61002 -22.26571 -20.31377 -19.55042 -18.59177 -18.26869 -17.33229 -17.06051 -16.54717 -16.38045 -16.18581 -15.90566 -15.65886 -15.22691 -14.94566 -14.73434 -14.58929 -14.40675 -14.25661 -13.71376 -13.53768 -13.39081 -12.95414 -12.88674 -12.73942 -12.50887 -12.41072 -12.34610 -12.19460 -11.93613 -11.79429 -11.69204 -11.39336 -11.15583 -11.04018 -10.54447 -10.48802 -10.19125 -9.86581 -8.60224 -7.81145 -5.28003 0.32707 1.50292 1.53253 1.60452 2.24833 2.29733 2.54928 2.95432 3.35531 3.58096 3.64176 3.72821 3.88481 3.98973 4.05447 4.18814 4.27482 4.32437 4.37216 4.47121 4.53499 4.57170 4.64458 4.71011 4.75845 4.83049 4.92451 4.96519 4.97295 5.02545 5.11095 5.20720 5.27070 5.32360 5.43378 5.48830 5.54325 5.64628 5.74890 5.79546 6.11304 6.44870 6.66224 7.19892 7.26266 7.89603 8.43720 9.25612 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.005611 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.155062 B = 4988.777923 C = 6094.264151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.031 0.969 4 C 0.141 3.859 5 H 0.077 0.923 6 N -0.691 5.691 7 C 0.544 3.456 8 O -0.590 6.590 9 C -0.180 4.180 10 C -0.107 4.107 11 C 0.085 3.915 12 O -0.393 6.393 13 C 0.062 3.938 14 C -0.119 4.119 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.248 4.248 20 H 0.079 0.921 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.957 3.043 24 H -0.292 1.292 25 H -0.300 1.300 26 H -0.263 1.263 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.409 0.591 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.056 0.944 43 H -0.005 1.005 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 -10.130 12.331 16.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.049 0.951 4 C 0.034 3.966 5 H 0.095 0.905 6 N -0.341 5.341 7 C 0.333 3.667 8 O -0.473 6.473 9 C -0.183 4.183 10 C -0.127 4.127 11 C 0.009 3.991 12 O -0.312 6.312 13 C -0.014 4.014 14 C -0.156 4.156 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.054 3.946 18 N -0.319 5.319 19 C -0.378 4.378 20 H 0.097 0.903 21 C -0.242 4.242 22 N -0.581 5.581 23 Si 0.786 3.214 24 H -0.219 1.219 25 H -0.227 1.227 26 H -0.187 1.187 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.247 0.753 31 H 0.146 0.854 32 H 0.112 0.888 33 H 0.150 0.850 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.013 0.987 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.665 -9.785 12.838 16.553 hybrid contribution 0.180 0.221 -1.500 1.527 sum -3.485 -9.565 11.338 15.237 Atomic orbital electron populations 1.21693 0.94267 1.01670 1.00842 1.20837 0.94493 0.93454 0.86273 0.95129 1.21351 0.93016 0.83574 0.98632 0.90482 1.45899 1.60938 1.17960 1.09262 1.18845 0.78181 0.86551 0.83113 1.90706 1.52766 1.68495 1.35365 1.20941 1.05201 0.94599 0.97597 1.23893 0.93751 0.97612 0.97455 1.21810 0.97788 0.90477 0.88982 1.88113 1.41877 1.86080 1.15125 1.22781 0.97339 0.93299 0.88024 1.21107 1.02464 0.97567 0.94465 1.21713 0.95437 1.00569 0.97616 1.21946 0.99747 0.98990 0.95760 1.20565 0.83318 0.95791 0.94914 1.44313 1.02899 1.65378 1.19286 1.19455 0.95644 1.36358 0.86387 0.90335 1.25775 0.98891 1.00779 0.98788 1.70183 1.25886 1.45529 1.16536 0.85434 0.77790 0.79049 0.79112 1.21920 1.22736 1.18712 0.91932 0.93245 0.92595 0.75339 0.85366 0.88799 0.85008 0.91403 0.86546 0.89604 0.89655 0.91432 0.92778 0.91936 0.92928 0.92571 0.98716 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.73 71.98 0.56 -3.89 16 2 C 0.16 6.04 3.19 44.98 0.14 6.18 16 3 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.14 4.91 2.32 45.07 0.10 5.02 16 5 H 0.08 2.71 7.58 -2.38 -0.02 2.69 16 6 N -0.69 -22.65 3.41 -445.77 -1.52 -24.17 16 7 C 0.54 17.75 7.69 86.57 0.67 18.42 16 8 O -0.59 -22.54 15.72 -4.07 -0.06 -22.60 16 9 C -0.18 -4.73 5.86 -18.59 -0.11 -4.84 16 10 C -0.11 -2.38 9.58 24.59 0.24 -2.14 16 11 C 0.09 1.37 7.04 71.10 0.50 1.87 16 12 O -0.39 -8.01 10.83 -148.98 -1.61 -9.62 16 13 C 0.06 1.14 6.89 72.07 0.50 1.64 16 14 C -0.12 -2.69 5.30 29.85 0.16 -2.53 16 15 C -0.11 -3.97 5.58 30.62 0.17 -3.79 16 16 C -0.13 -4.62 5.93 30.66 0.18 -4.44 16 17 C 0.18 8.20 5.28 86.35 0.46 8.66 16 18 N -0.59 -26.92 2.64 -675.30 -1.78 -28.71 16 19 C -0.25 -12.16 8.59 84.03 0.72 -11.44 16 20 H 0.08 3.66 6.24 -2.91 -0.02 3.64 16 21 C -0.05 -2.44 4.94 84.86 0.42 -2.02 16 22 N -0.94 -52.80 11.23 21.65 0.24 -52.56 16 23 Si 0.96 42.13 29.58 68.60 2.03 44.16 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16 29 H 0.06 1.91 6.39 -2.38 -0.02 1.89 16 30 H 0.41 13.56 6.07 -92.71 -0.56 13.00 16 31 H 0.13 2.99 7.29 -2.91 -0.02 2.97 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.10 8.09 -2.38 -0.02 1.08 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.09 2.00 7.30 -2.39 -0.02 1.98 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.05 1.94 7.53 -2.38 -0.02 1.92 16 42 H 0.06 2.90 6.14 -2.39 -0.01 2.89 16 43 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -62.22 340.70 2.42 -59.80 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.43 Total: 27.01 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 4.70 Total: 6.70 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -3.06 Total: -105.44 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.68 Total: -32.22 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -62.22 2.42 -59.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993224559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.745 kcal (2) G-P(sol) polarization free energy of solvation -62.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds