Wall clock time and date at job start Tue Mar 31 2020 07:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.58944 * 2 1 4 4 C 1.53195 * 109.58518 * 239.71951 * 2 1 3 5 5 H 1.09000 * 109.50275 * 65.62638 * 4 2 1 6 6 N 1.46505 * 109.49677 * 305.52631 * 4 2 1 7 7 C 1.34773 * 119.99850 * 154.99660 * 6 4 2 8 8 O 1.21612 * 120.00256 * 0.02562 * 7 6 4 9 9 C 1.47105 * 119.99907 * 179.97438 * 7 6 4 10 10 C 1.32085 * 118.87760 * 180.02562 * 9 7 6 11 11 C 1.50267 * 122.57793 * 180.37816 * 10 9 7 12 12 O 1.42890 * 110.09383 * 344.34977 * 11 10 9 13 13 C 1.43276 * 113.09749 * 50.53184 * 12 11 10 14 14 C 1.50421 * 118.87628 * 359.74296 * 9 7 6 15 15 C 1.53047 * 109.31193 * 185.58037 * 4 2 1 16 16 C 1.53033 * 109.53947 * 61.36390 * 15 4 2 17 17 C 1.53198 * 109.31381 * 298.63458 * 16 15 4 18 18 N 1.46921 * 109.58833 * 120.28392 * 2 1 3 19 19 C 1.36939 * 120.63165 * 353.39787 * 18 2 1 20 20 H 1.07999 * 120.00070 * 29.64771 * 19 18 2 21 21 C 1.38811 * 119.99872 * 209.65228 * 19 18 2 22 22 N 1.31611 * 120.00234 * 12.24508 * 21 19 18 23 23 Si 1.86803 * 119.99684 * 192.24341 * 21 19 18 24 24 H 1.48506 * 109.47297 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46908 * 120.00118 * 23 21 19 26 26 H 1.48497 * 109.46956 * 240.00184 * 23 21 19 27 27 H 1.08996 * 109.47005 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46925 * 59.99516 * 1 2 3 29 29 H 1.09001 * 109.46824 * 300.00374 * 1 2 3 30 30 H 0.97001 * 119.99722 * 335.00724 * 6 4 2 31 31 H 1.08002 * 118.70722 * 0.39338 * 10 9 7 32 32 H 1.08998 * 109.36726 * 104.54472 * 11 10 9 33 33 H 1.09008 * 109.36411 * 224.29074 * 11 10 9 34 34 H 1.08999 * 109.63597 * 50.85418 * 13 12 11 35 35 H 1.08995 * 109.63563 * 171.47128 * 13 12 11 36 36 H 1.08997 * 109.45042 * 283.36940 * 14 9 7 37 37 H 1.09004 * 109.45235 * 43.30645 * 14 9 7 38 38 H 1.09000 * 109.45877 * 181.38768 * 15 4 2 39 39 H 1.09001 * 109.45878 * 301.33941 * 15 4 2 40 40 H 1.08996 * 109.49927 * 58.58714 * 16 15 4 41 41 H 1.09002 * 109.49558 * 178.68711 * 16 15 4 42 42 H 1.08993 * 109.58703 * 174.42360 * 17 16 15 43 43 H 1.09005 * 109.58446 * 294.70948 * 17 16 15 44 44 H 0.97000 * 120.00259 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 1 1.7660 -0.1641 -2.1371 6 7 1.4514 -2.0663 -1.3098 7 6 1.3283 -2.6932 -2.4965 8 8 1.7092 -2.1479 -3.5146 9 6 0.7342 -4.0374 -2.5601 10 6 0.6248 -4.6315 -3.7347 11 6 0.0240 -5.9994 -3.8967 12 8 -0.0483 -6.6569 -2.6302 13 6 -0.6635 -5.8549 -1.6148 14 6 0.2780 -4.6911 -1.2844 15 6 3.5675 -0.8465 -1.1713 16 6 3.9569 -1.6658 0.0612 17 6 3.4651 -0.9487 1.3225 18 7 2.0226 -0.6980 1.1953 19 6 1.1538 -1.1104 2.1701 20 1 0.1389 -1.3750 1.9123 21 6 1.5774 -1.1882 3.4897 22 7 2.7217 -0.6448 3.8467 23 14 0.5232 -2.0642 4.7589 24 1 -0.7054 -2.5853 4.1075 25 1 1.2895 -3.1935 5.3444 26 1 0.1478 -1.1107 5.8337 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.1478 -2.5013 -0.4976 31 1 0.9812 -4.1140 -4.6130 32 1 -0.9787 -5.9067 -4.3137 33 1 0.6437 -6.5885 -4.5729 34 1 -1.6155 -5.4692 -1.9794 35 1 -0.8268 -6.4572 -0.7211 36 1 1.1442 -5.0638 -0.7377 37 1 -0.2512 -3.9613 -0.6717 38 1 3.9378 -1.3422 -2.0687 39 1 4.0062 0.1487 -1.0992 40 1 3.4983 -2.6528 0.0017 41 1 5.0412 -1.7697 0.1013 42 1 3.6519 -1.5746 2.1950 43 1 3.9922 -0.0010 1.4330 44 1 3.0176 -0.6989 4.7689 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993224560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:05 Heat of formation + Delta-G solvation = -50.080606 kcal Electronic energy + Delta-G solvation = -25307.730533 eV Core-core repulsion = 21839.665525 eV Total energy + Delta-G solvation = -3468.065008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.21224 -38.97692 -37.53898 -34.02448 -33.75850 -32.39222 -31.74603 -31.07302 -29.39913 -26.59135 -25.86431 -25.04621 -23.88096 -22.30063 -21.18687 -20.69661 -18.74375 -18.41509 -17.57155 -16.55076 -16.29312 -15.57844 -15.28501 -15.10867 -14.86358 -14.69467 -13.97303 -13.77347 -13.64830 -13.45474 -13.13589 -12.99167 -12.76337 -12.57357 -12.52292 -11.85987 -11.61836 -11.30669 -11.25432 -11.00753 -10.90288 -10.74104 -10.65536 -10.54067 -10.15057 -10.10697 -10.02325 -9.68778 -9.43207 -9.33999 -9.15335 -8.57238 -8.46416 -6.70592 -5.84601 -3.32006 1.39230 3.30558 3.37858 3.40000 3.48547 3.52286 3.80679 4.40484 4.62229 4.73914 4.75775 5.07920 5.12628 5.19748 5.27463 5.30196 5.45519 5.52324 5.56226 5.57848 5.66771 5.73562 5.86199 5.94659 6.09196 6.19205 6.22164 6.30971 6.38359 6.48320 6.51766 6.65839 6.66490 6.76134 6.90262 6.91750 6.93184 7.08798 7.37306 7.66278 7.73483 8.00705 8.38680 8.59329 9.14466 9.76839 10.34195 11.22904 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.005587 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.353071 B = 5010.224222 C = 6109.689987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.133 3.867 5 H 0.076 0.924 6 N -0.693 5.693 7 C 0.544 3.456 8 O -0.559 6.559 9 C -0.154 4.154 10 C -0.129 4.129 11 C 0.087 3.913 12 O -0.379 6.379 13 C 0.061 3.939 14 C -0.123 4.123 15 C -0.121 4.121 16 C -0.140 4.140 17 C 0.170 3.830 18 N -0.586 5.586 19 C -0.255 4.255 20 H 0.070 0.930 21 C 0.006 3.994 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.409 0.591 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.017 0.983 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 -7.340 -11.117 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.057 0.943 4 C 0.026 3.974 5 H 0.094 0.906 6 N -0.343 5.343 7 C 0.331 3.669 8 O -0.439 6.439 9 C -0.157 4.157 10 C -0.149 4.149 11 C 0.011 3.989 12 O -0.298 6.298 13 C -0.015 4.015 14 C -0.160 4.160 15 C -0.159 4.159 16 C -0.180 4.180 17 C 0.045 3.955 18 N -0.310 5.310 19 C -0.384 4.384 20 H 0.088 0.912 21 C -0.193 4.193 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.247 0.753 31 H 0.151 0.849 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.036 0.964 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.419 -7.096 -11.569 14.274 hybrid contribution -0.521 -0.181 1.114 1.243 sum -4.940 -7.277 -10.456 13.663 Atomic orbital electron populations 1.21785 0.95685 1.01335 1.00488 1.20725 0.93316 0.94002 0.86823 0.94255 1.21564 0.92997 0.83023 0.99796 0.90616 1.45956 1.60890 1.18536 1.08953 1.18390 0.78926 0.85634 0.83913 1.90728 1.51227 1.67369 1.34625 1.21007 1.03399 0.95264 0.96074 1.23605 0.96135 0.96595 0.98528 1.21548 1.00245 0.90601 0.86499 1.88125 1.81478 1.40897 1.19272 1.22705 0.94505 0.92519 0.91812 1.21147 1.01259 0.98291 0.95350 1.21768 0.95429 1.00465 0.98278 1.22148 0.98960 0.99521 0.97341 1.20847 0.83056 0.97271 0.94367 1.44155 1.03195 1.64932 1.18722 1.19185 0.94950 1.38151 0.86162 0.91219 1.25125 0.97488 0.99598 0.97077 1.69994 1.21814 1.45748 1.16907 0.86265 0.79797 0.79129 0.81788 1.20260 1.21625 1.21739 0.92931 0.94206 0.91715 0.75350 0.84874 0.91207 0.87345 0.92500 0.87990 0.89024 0.89200 0.93191 0.91904 0.92940 0.93448 0.89187 0.96445 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.73 37.16 0.29 -2.12 16 2 C 0.16 3.10 3.19 -67.60 -0.22 2.88 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.13 2.38 2.33 -67.80 -0.16 2.22 16 5 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 6 N -0.69 -11.74 3.41 -54.86 -0.19 -11.93 16 7 C 0.54 9.21 7.70 -12.66 -0.10 9.11 16 8 O -0.56 -10.97 15.72 5.27 0.08 -10.88 16 9 C -0.15 -2.16 5.86 -103.08 -0.60 -2.76 16 10 C -0.13 -1.58 9.58 -36.44 -0.35 -1.93 16 11 C 0.09 0.85 7.04 35.80 0.25 1.11 16 12 O -0.38 -4.46 10.83 -35.23 -0.38 -4.84 16 13 C 0.06 0.64 6.89 37.31 0.26 0.90 16 14 C -0.12 -1.50 5.31 -27.87 -0.15 -1.65 16 15 C -0.12 -2.17 5.58 -26.69 -0.15 -2.32 16 16 C -0.14 -2.68 5.93 -26.61 -0.16 -2.84 16 17 C 0.17 3.85 5.27 -3.69 -0.02 3.83 16 18 N -0.59 -13.26 2.66 -164.74 -0.44 -13.70 16 19 C -0.26 -6.26 8.60 -15.06 -0.13 -6.38 16 20 H 0.07 1.65 6.21 -52.49 -0.33 1.33 16 21 C 0.01 0.16 5.02 -17.43 -0.09 0.07 16 22 N -0.90 -24.79 11.03 55.49 0.61 -24.18 16 23 Si 0.90 20.43 29.57 -169.99 -5.03 15.40 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 27 H 0.05 0.92 6.39 -51.93 -0.33 0.58 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.23 7.64 -51.93 -0.40 0.83 16 30 H 0.41 6.99 6.08 -40.82 -0.25 6.74 16 31 H 0.13 1.69 7.29 -52.49 -0.38 1.30 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.07 7.30 -51.93 -0.38 0.69 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.02 7.53 -51.93 -0.39 0.63 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 2.30 6.03 -51.93 -0.31 1.98 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -29.10 340.42 -8.47 -37.58 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.95 Total: 7.30 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.32 Total: 0.12 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.01 Total: -49.80 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.30 Total: -15.73 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.10 -8.47 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993224560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.504 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds