Wall clock time and date at job start Tue Mar 31 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.58944 * 2 1 4 4 C 1.53195 * 109.58518 * 239.71951 * 2 1 3 5 5 H 1.09000 * 109.50275 * 65.62638 * 4 2 1 6 6 N 1.46505 * 109.49677 * 305.52631 * 4 2 1 7 7 C 1.34773 * 119.99850 * 154.99660 * 6 4 2 8 8 O 1.21612 * 120.00256 * 0.02562 * 7 6 4 9 9 C 1.47105 * 119.99907 * 179.97438 * 7 6 4 10 10 C 1.32085 * 118.87760 * 180.02562 * 9 7 6 11 11 C 1.50267 * 122.57793 * 180.37816 * 10 9 7 12 12 O 1.42890 * 110.09383 * 344.34977 * 11 10 9 13 13 C 1.43276 * 113.09749 * 50.53184 * 12 11 10 14 14 C 1.50421 * 118.87628 * 359.74296 * 9 7 6 15 15 C 1.53047 * 109.31193 * 185.58037 * 4 2 1 16 16 C 1.53033 * 109.53947 * 61.36390 * 15 4 2 17 17 C 1.53198 * 109.31381 * 298.63458 * 16 15 4 18 18 N 1.46921 * 109.58833 * 120.28392 * 2 1 3 19 19 C 1.36939 * 120.63165 * 353.39787 * 18 2 1 20 20 H 1.07999 * 120.00070 * 29.64771 * 19 18 2 21 21 C 1.38811 * 119.99872 * 209.65228 * 19 18 2 22 22 N 1.31611 * 120.00234 * 12.24508 * 21 19 18 23 23 Si 1.86803 * 119.99684 * 192.24341 * 21 19 18 24 24 H 1.48506 * 109.47297 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46908 * 120.00118 * 23 21 19 26 26 H 1.48497 * 109.46956 * 240.00184 * 23 21 19 27 27 H 1.08996 * 109.47005 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46925 * 59.99516 * 1 2 3 29 29 H 1.09001 * 109.46824 * 300.00374 * 1 2 3 30 30 H 0.97001 * 119.99722 * 335.00724 * 6 4 2 31 31 H 1.08002 * 118.70722 * 0.39338 * 10 9 7 32 32 H 1.08998 * 109.36726 * 104.54472 * 11 10 9 33 33 H 1.09008 * 109.36411 * 224.29074 * 11 10 9 34 34 H 1.08999 * 109.63597 * 50.85418 * 13 12 11 35 35 H 1.08995 * 109.63563 * 171.47128 * 13 12 11 36 36 H 1.08997 * 109.45042 * 283.36940 * 14 9 7 37 37 H 1.09004 * 109.45235 * 43.30645 * 14 9 7 38 38 H 1.09000 * 109.45877 * 181.38768 * 15 4 2 39 39 H 1.09001 * 109.45878 * 301.33941 * 15 4 2 40 40 H 1.08996 * 109.49927 * 58.58714 * 16 15 4 41 41 H 1.09002 * 109.49558 * 178.68711 * 16 15 4 42 42 H 1.08993 * 109.58703 * 174.42360 * 17 16 15 43 43 H 1.09005 * 109.58446 * 294.70948 * 17 16 15 44 44 H 0.97000 * 120.00259 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 1 1.7660 -0.1641 -2.1371 6 7 1.4514 -2.0663 -1.3098 7 6 1.3283 -2.6932 -2.4965 8 8 1.7092 -2.1479 -3.5146 9 6 0.7342 -4.0374 -2.5601 10 6 0.6248 -4.6315 -3.7347 11 6 0.0240 -5.9994 -3.8967 12 8 -0.0483 -6.6569 -2.6302 13 6 -0.6635 -5.8549 -1.6148 14 6 0.2780 -4.6911 -1.2844 15 6 3.5675 -0.8465 -1.1713 16 6 3.9569 -1.6658 0.0612 17 6 3.4651 -0.9487 1.3225 18 7 2.0226 -0.6980 1.1953 19 6 1.1538 -1.1104 2.1701 20 1 0.1389 -1.3750 1.9123 21 6 1.5774 -1.1882 3.4897 22 7 2.7217 -0.6448 3.8467 23 14 0.5232 -2.0642 4.7589 24 1 -0.7054 -2.5853 4.1075 25 1 1.2895 -3.1935 5.3444 26 1 0.1478 -1.1107 5.8337 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.1478 -2.5013 -0.4976 31 1 0.9812 -4.1140 -4.6130 32 1 -0.9787 -5.9067 -4.3137 33 1 0.6437 -6.5885 -4.5729 34 1 -1.6155 -5.4692 -1.9794 35 1 -0.8268 -6.4572 -0.7211 36 1 1.1442 -5.0638 -0.7377 37 1 -0.2512 -3.9613 -0.6717 38 1 3.9378 -1.3422 -2.0687 39 1 4.0062 0.1487 -1.0992 40 1 3.4983 -2.6528 0.0017 41 1 5.0412 -1.7697 0.1013 42 1 3.6519 -1.5746 2.1950 43 1 3.9922 -0.0010 1.4330 44 1 3.0176 -0.6989 4.7689 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993224560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:04 Heat of formation + Delta-G solvation = -67.366831 kcal Electronic energy + Delta-G solvation = -25308.480120 eV Core-core repulsion = 21839.665525 eV Total energy + Delta-G solvation = -3468.814595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46013 -40.09154 -38.99323 -35.65823 -34.84576 -33.95304 -33.36917 -32.02386 -31.03957 -28.05048 -27.05957 -26.75344 -24.82080 -23.81681 -22.60835 -22.26966 -20.31504 -19.55103 -18.59047 -18.27573 -17.33349 -17.07638 -16.56248 -16.35498 -16.19076 -15.89457 -15.66318 -15.18557 -14.91308 -14.80354 -14.55892 -14.43571 -14.25271 -13.66879 -13.57137 -13.38186 -12.95812 -12.89100 -12.74837 -12.50327 -12.42182 -12.31108 -12.19496 -11.89181 -11.79562 -11.68986 -11.38474 -11.15929 -11.05766 -10.54363 -10.49612 -10.18823 -9.86843 -8.59917 -7.79920 -5.28609 0.32694 1.49772 1.53049 1.61026 2.22800 2.31457 2.54533 2.96066 3.36949 3.58464 3.64322 3.72935 3.88706 3.99072 4.05300 4.18813 4.28439 4.31932 4.37681 4.46413 4.53041 4.58002 4.64756 4.70707 4.76382 4.83318 4.93288 4.97099 4.97465 5.02049 5.11064 5.20811 5.27106 5.32809 5.43647 5.49304 5.55799 5.65477 5.74766 5.81574 6.12059 6.45732 6.65997 7.20264 7.26097 7.89773 8.43523 9.26579 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.005587 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.353071 B = 5010.224222 C = 6109.689987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.032 0.968 4 C 0.141 3.859 5 H 0.079 0.921 6 N -0.691 5.691 7 C 0.544 3.456 8 O -0.590 6.590 9 C -0.180 4.180 10 C -0.107 4.107 11 C 0.085 3.915 12 O -0.395 6.395 13 C 0.062 3.938 14 C -0.119 4.119 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.178 3.822 18 N -0.596 5.596 19 C -0.245 4.245 20 H 0.082 0.918 21 C -0.049 4.049 22 N -0.937 5.937 23 Si 0.959 3.041 24 H -0.259 1.259 25 H -0.297 1.297 26 H -0.301 1.301 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.409 0.591 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.059 0.941 43 H -0.006 1.006 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 -8.843 -12.661 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.049 0.951 4 C 0.034 3.966 5 H 0.097 0.903 6 N -0.341 5.341 7 C 0.333 3.667 8 O -0.473 6.473 9 C -0.183 4.183 10 C -0.127 4.127 11 C 0.010 3.990 12 O -0.314 6.314 13 C -0.014 4.014 14 C -0.156 4.156 15 C -0.154 4.154 16 C -0.165 4.165 17 C 0.053 3.947 18 N -0.320 5.320 19 C -0.375 4.375 20 H 0.099 0.901 21 C -0.245 4.245 22 N -0.584 5.584 23 Si 0.788 3.212 24 H -0.183 1.183 25 H -0.224 1.224 26 H -0.229 1.229 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.246 0.754 31 H 0.146 0.854 32 H 0.114 0.886 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.012 0.988 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.081 -8.612 -13.137 16.844 hybrid contribution -0.005 0.315 1.471 1.505 sum -6.086 -8.297 -11.665 15.555 Atomic orbital electron populations 1.21702 0.94112 1.01718 1.00943 1.20845 0.94630 0.93458 0.86123 0.95060 1.21359 0.92868 0.83612 0.98741 0.90328 1.45897 1.60887 1.18084 1.09190 1.18852 0.78214 0.86514 0.83121 1.90706 1.52758 1.68426 1.35447 1.20943 1.05566 0.94264 0.97573 1.23894 0.93762 0.97432 0.97629 1.21810 1.01845 0.89065 0.86327 1.88114 1.81735 1.41444 1.20057 1.22802 0.94370 0.91920 0.92316 1.21119 1.01265 0.98862 0.94379 1.21716 0.95624 1.00523 0.97515 1.21956 0.99673 0.98939 0.95958 1.20608 0.83355 0.95837 0.94924 1.44318 1.02956 1.65430 1.19273 1.19532 0.95387 1.36235 0.86333 0.90075 1.25804 0.98648 1.01026 0.98984 1.70158 1.23669 1.47934 1.16639 0.85323 0.78956 0.77524 0.79361 1.18283 1.22397 1.22875 0.92523 0.91848 0.93145 0.75355 0.85385 0.88597 0.85167 0.91033 0.86618 0.90119 0.89288 0.92943 0.91394 0.93152 0.92099 0.92222 0.98769 0.94508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.73 71.98 0.56 -3.78 16 2 C 0.16 5.99 3.19 44.98 0.14 6.13 16 3 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 4 C 0.14 4.91 2.33 45.07 0.10 5.02 16 5 H 0.08 2.75 7.58 -2.39 -0.02 2.73 16 6 N -0.69 -22.64 3.41 -445.75 -1.52 -24.16 16 7 C 0.54 17.75 7.70 86.57 0.67 18.42 16 8 O -0.59 -22.56 15.72 -4.07 -0.06 -22.62 16 9 C -0.18 -4.73 5.86 -18.58 -0.11 -4.84 16 10 C -0.11 -2.38 9.58 24.59 0.24 -2.15 16 11 C 0.09 1.37 7.04 71.10 0.50 1.87 16 12 O -0.39 -8.08 10.83 -148.98 -1.61 -9.70 16 13 C 0.06 1.12 6.89 72.08 0.50 1.62 16 14 C -0.12 -2.69 5.31 29.86 0.16 -2.53 16 15 C -0.12 -4.04 5.58 30.62 0.17 -3.87 16 16 C -0.13 -4.77 5.93 30.67 0.18 -4.59 16 17 C 0.18 8.25 5.27 86.36 0.45 8.70 16 18 N -0.60 -27.00 2.66 -675.13 -1.80 -28.80 16 19 C -0.24 -11.94 8.60 84.03 0.72 -11.22 16 20 H 0.08 3.73 6.21 -2.91 -0.02 3.71 16 21 C -0.05 -2.58 5.02 84.86 0.43 -2.15 16 22 N -0.94 -53.05 11.03 21.65 0.24 -52.81 16 23 Si 0.96 42.20 29.57 68.60 2.03 44.23 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.30 -13.29 7.11 99.48 0.71 -12.59 16 26 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 27 H 0.06 1.87 6.39 -2.39 -0.02 1.85 16 28 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.05 1.85 7.64 -2.39 -0.02 1.84 16 30 H 0.41 13.54 6.08 -92.71 -0.56 12.97 16 31 H 0.13 2.99 7.29 -2.91 -0.02 2.97 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 1.98 7.30 -2.38 -0.02 1.96 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 1.93 7.53 -2.39 -0.02 1.91 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 3.14 6.03 -2.39 -0.01 3.13 16 43 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 44 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -62.59 340.42 2.42 -60.17 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.43 Total: 27.05 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.71 Total: 6.64 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -3.08 Total: -105.77 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.68 Total: -32.32 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -62.59 2.42 -60.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993224560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.197 kcal (2) G-P(sol) polarization free energy of solvation -62.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds