Wall clock time and date at job start Tue Mar 31 2020 07:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.69901 * 2 1 4 4 C 1.53187 * 109.58817 * 120.36068 * 2 1 3 5 5 H 1.08999 * 109.49918 * 54.47048 * 4 2 1 6 6 N 1.46505 * 109.49502 * 294.40433 * 4 2 1 7 7 C 1.34771 * 119.99749 * 155.00271 * 6 4 2 8 8 O 1.21618 * 120.00642 * 359.97438 * 7 6 4 9 9 C 1.47102 * 119.99941 * 179.97438 * 7 6 4 10 10 C 1.32091 * 118.87520 * 179.97438 * 9 7 6 11 11 C 1.50269 * 122.57250 * 180.36879 * 10 9 7 12 12 O 1.42887 * 110.10056 * 344.36405 * 11 10 9 13 13 C 1.43276 * 113.10166 * 50.52157 * 12 11 10 14 14 C 1.50415 * 118.87611 * 359.73625 * 9 7 6 15 15 C 1.53046 * 109.31183 * 174.42359 * 4 2 1 16 16 C 1.53044 * 109.53404 * 298.63052 * 15 4 2 17 17 C 1.52755 * 109.38132 * 61.24392 * 16 15 4 18 18 N 1.46923 * 109.00900 * 305.58408 * 17 16 15 19 19 C 1.36943 * 120.62930 * 233.58508 * 18 17 16 20 20 H 1.07995 * 119.99583 * 149.98435 * 19 18 17 21 21 C 1.38814 * 119.99925 * 329.98528 * 19 18 17 22 22 N 1.31617 * 119.99922 * 347.92359 * 21 19 18 23 23 Si 1.86806 * 119.99574 * 167.92354 * 21 19 18 24 24 H 1.48496 * 109.46633 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47135 * 300.00171 * 23 21 19 26 26 H 1.48501 * 109.47087 * 60.00357 * 23 21 19 27 27 H 1.09004 * 109.47492 * 180.35151 * 1 2 3 28 28 H 1.09000 * 109.47041 * 300.35475 * 1 2 3 29 29 H 1.09000 * 109.47244 * 60.35143 * 1 2 3 30 30 H 0.96999 * 120.00279 * 334.99494 * 6 4 2 31 31 H 1.07995 * 118.71335 * 0.40037 * 10 9 7 32 32 H 1.09011 * 109.36514 * 104.55228 * 11 10 9 33 33 H 1.08995 * 109.36725 * 224.16547 * 11 10 9 34 34 H 1.09004 * 109.63386 * 50.85819 * 13 12 11 35 35 H 1.09003 * 109.63936 * 171.26882 * 13 12 11 36 36 H 1.08997 * 109.45063 * 283.37123 * 14 9 7 37 37 H 1.08999 * 109.45578 * 43.30524 * 14 9 7 38 38 H 1.08998 * 109.46221 * 58.65177 * 15 4 2 39 39 H 1.09001 * 109.45484 * 178.62958 * 15 4 2 40 40 H 1.09007 * 109.49256 * 181.31765 * 16 15 4 41 41 H 1.08998 * 109.49776 * 301.38430 * 16 15 4 42 42 H 1.09005 * 109.50719 * 185.70148 * 17 16 15 43 43 H 1.09006 * 109.43430 * 65.42411 * 17 16 15 44 44 H 0.96998 * 119.99283 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 1.2453 5 1 1.6030 -1.7254 1.2911 6 7 1.6698 0.0262 2.4435 7 6 1.5466 -0.6057 3.6275 8 8 1.7450 -1.8033 3.7012 9 6 1.1719 0.1531 4.8307 10 6 1.0568 -0.4887 5.9795 11 6 0.6710 0.2021 7.2570 12 8 0.8154 1.6164 7.1134 13 6 0.1708 2.1313 5.9421 14 6 0.9382 1.6342 4.7119 15 6 3.5675 -0.8480 1.1700 16 6 3.9568 -1.6657 -0.0637 17 6 3.4643 -0.9518 -1.3212 18 7 2.0225 -0.6995 -1.1945 19 6 1.1535 -1.1134 -2.1687 20 1 0.1393 -1.3793 -1.9100 21 6 1.5764 -1.1911 -3.4885 22 7 2.7214 -0.6492 -3.8457 23 14 0.5202 -2.0649 -4.7577 24 1 1.1901 -2.0094 -6.0818 25 1 0.3350 -3.4826 -4.3561 26 1 -0.8037 -1.3978 -4.8438 27 1 -0.3634 -1.0277 0.0063 28 1 -0.3633 0.5193 0.8868 29 1 -0.3634 0.5084 -0.8931 30 1 1.5113 0.9813 2.3847 31 1 1.2480 -1.5514 6.0015 32 1 -0.3663 -0.0329 7.4959 33 1 1.3140 -0.1468 8.0650 34 1 -0.8589 1.7755 5.9043 35 1 0.1812 3.2209 5.9672 36 1 1.8968 2.1488 4.6457 37 1 0.3541 1.8388 3.8147 38 1 4.0061 0.1473 1.0992 39 1 3.9377 -1.3452 2.0666 40 1 5.0412 -1.7695 -0.1039 41 1 3.4987 -2.6530 -0.0052 42 1 3.6503 -1.5797 -2.1927 43 1 3.9928 -0.0048 -1.4311 44 1 3.0166 -0.7033 -4.7681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993224562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:08 Heat of formation + Delta-G solvation = -50.772076 kcal Electronic energy + Delta-G solvation = -24564.647052 eV Core-core repulsion = 21096.552059 eV Total energy + Delta-G solvation = -3468.094993 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31655 -39.03031 -37.60295 -34.39717 -33.90919 -32.54913 -31.73396 -31.25667 -29.23894 -26.67626 -25.88126 -25.00183 -24.05158 -22.44306 -20.80822 -20.69078 -19.56127 -18.38848 -17.67643 -16.66081 -16.36545 -15.68130 -15.45939 -15.29825 -14.94961 -14.63794 -13.95004 -13.88726 -13.72605 -13.54929 -13.39074 -12.97786 -12.86069 -12.63903 -12.53243 -11.81723 -11.71305 -11.53938 -11.12948 -11.08659 -10.90626 -10.77666 -10.59521 -10.34951 -10.27842 -10.10103 -10.04347 -9.82708 -9.57466 -9.38004 -9.30023 -8.66170 -8.46176 -6.67318 -5.79865 -3.26544 1.23827 3.29931 3.34184 3.37321 3.42964 3.44473 3.61294 4.42198 4.46084 4.53747 4.58364 4.89564 4.96821 5.06365 5.25765 5.27718 5.33500 5.36760 5.43865 5.52105 5.60494 5.61325 5.78981 5.95829 6.06983 6.08765 6.20131 6.25552 6.33918 6.39643 6.52753 6.63600 6.71498 6.74026 6.75462 6.86684 6.96612 7.05970 7.41475 7.69283 7.74835 7.79626 8.39449 8.45953 9.19621 9.81470 10.37849 11.28422 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029668 B = 0.003521 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.546372 B = 7949.620187 C = 8271.181302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.129 3.871 5 H 0.086 0.914 6 N -0.712 5.712 7 C 0.547 3.453 8 O -0.545 6.545 9 C -0.161 4.161 10 C -0.122 4.122 11 C 0.086 3.914 12 O -0.379 6.379 13 C 0.060 3.940 14 C -0.121 4.121 15 C -0.117 4.117 16 C -0.140 4.140 17 C 0.169 3.831 18 N -0.582 5.582 19 C -0.253 4.253 20 H 0.070 0.930 21 C 0.005 3.995 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.396 0.604 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.018 0.982 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 5.340 18.216 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.024 3.976 5 H 0.104 0.896 6 N -0.361 5.361 7 C 0.334 3.666 8 O -0.424 6.424 9 C -0.164 4.164 10 C -0.142 4.142 11 C 0.010 3.990 12 O -0.297 6.297 13 C -0.017 4.017 14 C -0.158 4.158 15 C -0.155 4.155 16 C -0.180 4.180 17 C 0.043 3.957 18 N -0.305 5.305 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.734 3.266 24 H -0.216 1.216 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.230 0.770 31 H 0.153 0.847 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.036 0.964 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.133 4.613 18.154 18.991 hybrid contribution -0.572 -0.205 -1.006 1.175 sum -3.705 4.408 17.148 18.089 Atomic orbital electron populations 1.21818 0.95691 1.01659 1.00220 1.20562 0.93209 0.93577 0.86672 0.95501 1.21823 0.95173 0.96879 0.83738 0.89599 1.46078 1.69503 1.12148 1.08402 1.18363 0.77434 0.87210 0.83563 1.90779 1.51149 1.14744 1.85771 1.20982 1.05330 0.95949 0.94179 1.23666 0.94783 1.01836 0.93943 1.21576 1.01456 0.80720 0.95256 1.88126 1.76611 1.20966 1.44010 1.22694 0.95265 0.99579 0.84115 1.21122 1.02508 0.92265 0.99955 1.21762 0.95335 1.00056 0.98374 1.22125 0.99256 0.99721 0.96914 1.20786 0.83020 0.97295 0.94572 1.44011 1.03233 1.65018 1.18277 1.19136 0.95032 1.37993 0.86055 0.91284 1.25107 0.97596 0.99643 0.97039 1.69983 1.21848 1.45946 1.17060 0.86350 0.79744 0.79806 0.80722 1.21619 1.20975 1.20879 0.92693 0.94400 0.91685 0.76984 0.84692 0.91002 0.87140 0.92415 0.88037 0.89232 0.89418 0.92779 0.93250 0.92977 0.92583 0.89029 0.96389 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.83 37.15 0.29 -2.22 16 2 C 0.17 3.36 3.04 -67.60 -0.21 3.16 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.13 2.37 1.99 -67.81 -0.14 2.24 16 5 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 6 N -0.71 -10.57 4.53 -54.87 -0.25 -10.82 16 7 C 0.55 8.50 7.70 -12.67 -0.10 8.41 16 8 O -0.55 -10.58 15.72 5.26 0.08 -10.49 16 9 C -0.16 -1.92 5.86 -103.09 -0.60 -2.53 16 10 C -0.12 -1.32 9.58 -36.44 -0.35 -1.67 16 11 C 0.09 0.71 7.04 35.80 0.25 0.96 16 12 O -0.38 -3.69 10.83 -35.23 -0.38 -4.07 16 13 C 0.06 0.47 6.89 37.30 0.26 0.73 16 14 C -0.12 -1.08 5.30 -27.88 -0.15 -1.22 16 15 C -0.12 -2.14 5.46 -26.68 -0.15 -2.29 16 16 C -0.14 -2.81 6.06 -26.83 -0.16 -2.97 16 17 C 0.17 4.00 5.24 -3.94 -0.02 3.98 16 18 N -0.58 -14.17 3.00 -165.04 -0.49 -14.67 16 19 C -0.25 -6.70 8.59 -15.06 -0.13 -6.83 16 20 H 0.07 1.79 6.22 -52.49 -0.33 1.46 16 21 C 0.00 0.13 5.03 -17.43 -0.09 0.04 16 22 N -0.90 -25.71 11.03 55.49 0.61 -25.09 16 23 Si 0.90 21.44 29.57 -169.99 -5.03 16.42 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.05 1.07 7.44 -51.93 -0.39 0.68 16 28 H 0.04 0.57 7.80 -51.93 -0.41 0.16 16 29 H 0.06 1.27 7.63 -51.93 -0.40 0.88 16 30 H 0.40 4.81 6.90 -40.82 -0.28 4.53 16 31 H 0.14 1.57 7.29 -52.49 -0.38 1.19 16 32 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.67 7.30 -51.93 -0.38 0.29 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -31.47 343.62 -8.61 -40.08 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.05 Total: 3.69 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.28 Total: -0.22 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.13 Total: -50.58 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.30 Total: -14.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.47 -8.61 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993224562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.694 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds