Wall clock time and date at job start Tue Mar 31 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.69901 * 2 1 4 4 C 1.53187 * 109.58817 * 120.36068 * 2 1 3 5 5 H 1.08999 * 109.49918 * 54.47048 * 4 2 1 6 6 N 1.46505 * 109.49502 * 294.40433 * 4 2 1 7 7 C 1.34771 * 119.99749 * 155.00271 * 6 4 2 8 8 O 1.21618 * 120.00642 * 359.97438 * 7 6 4 9 9 C 1.47102 * 119.99941 * 179.97438 * 7 6 4 10 10 C 1.32091 * 118.87520 * 179.97438 * 9 7 6 11 11 C 1.50269 * 122.57250 * 180.36879 * 10 9 7 12 12 O 1.42887 * 110.10056 * 344.36405 * 11 10 9 13 13 C 1.43276 * 113.10166 * 50.52157 * 12 11 10 14 14 C 1.50415 * 118.87611 * 359.73625 * 9 7 6 15 15 C 1.53046 * 109.31183 * 174.42359 * 4 2 1 16 16 C 1.53044 * 109.53404 * 298.63052 * 15 4 2 17 17 C 1.52755 * 109.38132 * 61.24392 * 16 15 4 18 18 N 1.46923 * 109.00900 * 305.58408 * 17 16 15 19 19 C 1.36943 * 120.62930 * 233.58508 * 18 17 16 20 20 H 1.07995 * 119.99583 * 149.98435 * 19 18 17 21 21 C 1.38814 * 119.99925 * 329.98528 * 19 18 17 22 22 N 1.31617 * 119.99922 * 347.92359 * 21 19 18 23 23 Si 1.86806 * 119.99574 * 167.92354 * 21 19 18 24 24 H 1.48496 * 109.46633 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47135 * 300.00171 * 23 21 19 26 26 H 1.48501 * 109.47087 * 60.00357 * 23 21 19 27 27 H 1.09004 * 109.47492 * 180.35151 * 1 2 3 28 28 H 1.09000 * 109.47041 * 300.35475 * 1 2 3 29 29 H 1.09000 * 109.47244 * 60.35143 * 1 2 3 30 30 H 0.96999 * 120.00279 * 334.99494 * 6 4 2 31 31 H 1.07995 * 118.71335 * 0.40037 * 10 9 7 32 32 H 1.09011 * 109.36514 * 104.55228 * 11 10 9 33 33 H 1.08995 * 109.36725 * 224.16547 * 11 10 9 34 34 H 1.09004 * 109.63386 * 50.85819 * 13 12 11 35 35 H 1.09003 * 109.63936 * 171.26882 * 13 12 11 36 36 H 1.08997 * 109.45063 * 283.37123 * 14 9 7 37 37 H 1.08999 * 109.45578 * 43.30524 * 14 9 7 38 38 H 1.08998 * 109.46221 * 58.65177 * 15 4 2 39 39 H 1.09001 * 109.45484 * 178.62958 * 15 4 2 40 40 H 1.09007 * 109.49256 * 181.31765 * 16 15 4 41 41 H 1.08998 * 109.49776 * 301.38430 * 16 15 4 42 42 H 1.09005 * 109.50719 * 185.70148 * 17 16 15 43 43 H 1.09006 * 109.43430 * 65.42411 * 17 16 15 44 44 H 0.96998 * 119.99283 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 1.2453 5 1 1.6030 -1.7254 1.2911 6 7 1.6698 0.0262 2.4435 7 6 1.5466 -0.6057 3.6275 8 8 1.7450 -1.8033 3.7012 9 6 1.1719 0.1531 4.8307 10 6 1.0568 -0.4887 5.9795 11 6 0.6710 0.2021 7.2570 12 8 0.8154 1.6164 7.1134 13 6 0.1708 2.1313 5.9421 14 6 0.9382 1.6342 4.7119 15 6 3.5675 -0.8480 1.1700 16 6 3.9568 -1.6657 -0.0637 17 6 3.4643 -0.9518 -1.3212 18 7 2.0225 -0.6995 -1.1945 19 6 1.1535 -1.1134 -2.1687 20 1 0.1393 -1.3793 -1.9100 21 6 1.5764 -1.1911 -3.4885 22 7 2.7214 -0.6492 -3.8457 23 14 0.5202 -2.0649 -4.7577 24 1 1.1901 -2.0094 -6.0818 25 1 0.3350 -3.4826 -4.3561 26 1 -0.8037 -1.3978 -4.8438 27 1 -0.3634 -1.0277 0.0063 28 1 -0.3633 0.5193 0.8868 29 1 -0.3634 0.5084 -0.8931 30 1 1.5113 0.9813 2.3847 31 1 1.2480 -1.5514 6.0015 32 1 -0.3663 -0.0329 7.4959 33 1 1.3140 -0.1468 8.0650 34 1 -0.8589 1.7755 5.9043 35 1 0.1812 3.2209 5.9672 36 1 1.8968 2.1488 4.6457 37 1 0.3541 1.8388 3.8147 38 1 4.0061 0.1473 1.0992 39 1 3.9377 -1.3452 2.0666 40 1 5.0412 -1.7695 -0.1039 41 1 3.4987 -2.6530 -0.0052 42 1 3.6503 -1.5797 -2.1927 43 1 3.9928 -0.0048 -1.4311 44 1 3.0166 -0.7033 -4.7681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993224562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:07 Heat of formation + Delta-G solvation = -71.446239 kcal Electronic energy + Delta-G solvation = -24565.543551 eV Core-core repulsion = 21096.552059 eV Total energy + Delta-G solvation = -3468.991492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43716 -40.05063 -39.08392 -35.97418 -34.87698 -34.17623 -33.41520 -32.03187 -30.91020 -28.09007 -27.12085 -26.70433 -24.84353 -23.88122 -22.37476 -22.09012 -21.17569 -19.47274 -18.58730 -18.26969 -17.52746 -17.07082 -16.65175 -16.31641 -16.26290 -15.80262 -15.61238 -15.45369 -14.97888 -14.83054 -14.63589 -14.42211 -14.30578 -13.63585 -13.48413 -13.36249 -13.19127 -12.80739 -12.72392 -12.54861 -12.48612 -12.40535 -12.02651 -11.90068 -11.80991 -11.77405 -11.60743 -11.24969 -11.11368 -10.55414 -10.52374 -10.22392 -9.95291 -8.64961 -7.85304 -5.33755 0.29524 1.46970 1.49622 1.55383 2.11778 2.20404 2.53361 2.96314 3.30470 3.53740 3.66975 3.72737 3.86681 3.90119 4.01223 4.18251 4.30441 4.33250 4.34290 4.47392 4.48828 4.57781 4.59855 4.71148 4.75206 4.84159 4.87125 4.90229 4.99461 5.00968 5.10667 5.19212 5.23937 5.28583 5.43143 5.45310 5.50924 5.59915 5.69043 5.76695 6.13039 6.42027 6.56412 7.15898 7.21905 7.85743 8.37351 9.21246 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029668 B = 0.003521 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.546372 B = 7949.620187 C = 8271.181302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.035 0.965 4 C 0.145 3.855 5 H 0.056 0.944 6 N -0.700 5.700 7 C 0.545 3.455 8 O -0.591 6.591 9 C -0.178 4.178 10 C -0.111 4.111 11 C 0.087 3.913 12 O -0.394 6.394 13 C 0.058 3.942 14 C -0.118 4.118 15 C -0.109 4.109 16 C -0.130 4.130 17 C 0.176 3.824 18 N -0.601 5.601 19 C -0.256 4.256 20 H 0.072 0.928 21 C -0.047 4.047 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.295 1.295 25 H -0.282 1.282 26 H -0.274 1.274 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.412 0.588 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.004 0.996 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 6.620 20.264 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.058 3.942 3 H 0.053 0.947 4 C 0.039 3.961 5 H 0.074 0.926 6 N -0.351 5.351 7 C 0.335 3.665 8 O -0.473 6.473 9 C -0.181 4.181 10 C -0.131 4.131 11 C 0.011 3.989 12 O -0.313 6.313 13 C -0.018 4.018 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.170 4.170 17 C 0.050 3.950 18 N -0.325 5.325 19 C -0.386 4.386 20 H 0.090 0.910 21 C -0.243 4.243 22 N -0.580 5.580 23 Si 0.792 3.208 24 H -0.221 1.221 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.249 0.751 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.022 0.978 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.260 5.933 20.233 21.511 hybrid contribution -0.232 -0.626 -1.548 1.686 sum -4.492 5.307 18.685 19.937 Atomic orbital electron populations 1.21731 0.94345 1.01032 1.01392 1.20719 0.94367 0.93508 0.85593 0.94710 1.21333 0.94858 0.95541 0.84403 0.92617 1.45835 1.69260 1.12717 1.07254 1.18975 0.76285 0.86853 0.84428 1.90758 1.53204 1.16890 1.86456 1.20955 1.07090 0.97450 0.92614 1.23912 0.92806 1.01422 0.94939 1.21751 1.03027 0.80073 0.94030 1.88115 1.77058 1.21395 1.44744 1.22864 0.95317 1.00768 0.82869 1.21180 1.03180 0.89868 1.01279 1.21683 0.95411 1.00344 0.97339 1.21964 1.00335 0.98715 0.95960 1.20567 0.83189 0.96214 0.95023 1.44250 1.03196 1.65814 1.19203 1.19429 0.95378 1.37144 0.86673 0.91046 1.25798 0.98833 1.00815 0.98835 1.70135 1.23395 1.47561 1.16926 0.85406 0.78526 0.78688 0.78210 1.22079 1.20880 1.19921 0.94211 0.90615 0.93021 0.75052 0.86056 0.88855 0.85360 0.91472 0.86013 0.88904 0.88112 0.91496 0.92999 0.90922 0.93924 0.92345 0.97803 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 7.83 71.98 0.56 -3.98 16 2 C 0.16 6.50 3.04 44.97 0.14 6.63 16 3 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 4 C 0.15 5.24 1.99 45.07 0.09 5.33 16 5 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 6 N -0.70 -19.64 4.53 -445.76 -2.02 -21.66 16 7 C 0.54 16.34 7.70 86.57 0.67 17.01 16 8 O -0.59 -22.95 15.72 -4.09 -0.06 -23.01 16 9 C -0.18 -3.89 5.86 -18.59 -0.11 -4.00 16 10 C -0.11 -2.19 9.58 24.59 0.24 -1.96 16 11 C 0.09 1.18 7.04 71.10 0.50 1.68 16 12 O -0.39 -6.42 10.83 -148.98 -1.61 -8.03 16 13 C 0.06 0.71 6.89 72.07 0.50 1.20 16 14 C -0.12 -1.73 5.30 29.85 0.16 -1.58 16 15 C -0.11 -3.92 5.46 30.62 0.17 -3.75 16 16 C -0.13 -5.22 6.06 30.53 0.19 -5.04 16 17 C 0.18 8.52 5.24 86.22 0.45 8.97 16 18 N -0.60 -29.59 3.00 -676.06 -2.03 -31.62 16 19 C -0.26 -13.75 8.59 84.03 0.72 -13.03 16 20 H 0.07 3.73 6.22 -2.91 -0.02 3.71 16 21 C -0.05 -2.62 5.03 84.86 0.43 -2.19 16 22 N -0.93 -54.46 11.03 21.65 0.24 -54.22 16 23 Si 0.96 44.68 29.57 68.60 2.03 46.71 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 H 0.04 1.52 7.44 -2.38 -0.02 1.50 16 28 H 0.08 2.08 7.80 -2.39 -0.02 2.06 16 29 H 0.05 1.97 7.63 -2.39 -0.02 1.95 16 30 H 0.41 8.91 6.90 -92.71 -0.64 8.27 16 31 H 0.12 2.73 7.29 -2.91 -0.02 2.71 16 32 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.13 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.19 7.30 -2.39 -0.02 1.17 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 3.22 6.04 -2.38 -0.01 3.21 16 43 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 44 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -69.51 343.62 1.59 -67.92 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.35 Total: 18.62 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 4.69 Total: 5.30 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.81 Total: -107.50 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.68 Total: -31.04 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.51 1.59 -67.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993224562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.528 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds