Wall clock time and date at job start Tue Mar 31 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70512 * 2 1 4 4 C 1.53199 * 109.58457 * 239.64130 * 2 1 3 5 5 H 1.08996 * 109.52441 * 305.55384 * 4 2 1 6 6 N 1.46505 * 109.49413 * 65.62848 * 4 2 1 7 7 C 1.34772 * 119.99859 * 204.83488 * 6 4 2 8 8 O 1.21287 * 120.00211 * 0.02562 * 7 6 4 9 9 C 1.50704 * 119.99969 * 179.72912 * 7 6 4 10 10 H 1.09002 * 115.50622 * 325.64143 * 9 7 6 11 11 C 1.52990 * 117.43347 * 110.93040 * 9 7 6 12 12 H 1.09000 * 119.80927 * 355.36244 * 11 9 7 13 13 C 1.54483 * 118.06273 * 198.08658 * 11 9 7 14 14 O 1.44426 * 104.80204 * 273.16838 * 13 11 9 15 15 C 1.44420 * 105.27463 * 40.51257 * 14 13 11 16 16 C 1.52998 * 117.43165 * 180.27865 * 9 7 6 17 17 H 1.09003 * 119.80837 * 5.64912 * 16 9 7 18 18 C 1.53034 * 109.31001 * 185.57938 * 4 2 1 19 19 C 1.53043 * 109.53900 * 61.36999 * 18 4 2 20 20 C 1.53189 * 109.30932 * 298.63168 * 19 18 4 21 21 N 1.46925 * 109.58370 * 120.35863 * 2 1 3 22 22 C 1.36936 * 120.62997 * 353.41261 * 21 2 1 23 23 H 1.07998 * 120.00463 * 29.00706 * 22 21 2 24 24 C 1.38817 * 119.99790 * 209.00199 * 22 21 2 25 25 N 1.31623 * 120.00045 * 15.02674 * 24 22 21 26 26 Si 1.86796 * 119.99831 * 195.02804 * 24 22 21 27 27 H 1.48494 * 109.47374 * 90.00298 * 26 24 22 28 28 H 1.48506 * 109.47211 * 209.99802 * 26 24 22 29 29 H 1.48496 * 109.47335 * 329.99795 * 26 24 22 30 30 H 1.09001 * 109.47755 * 180.35493 * 1 2 3 31 31 H 1.09000 * 109.47098 * 300.36258 * 1 2 3 32 32 H 1.09003 * 109.47187 * 60.35534 * 1 2 3 33 33 H 0.96995 * 120.00186 * 24.83978 * 6 4 2 34 34 H 1.09005 * 110.37237 * 154.34175 * 13 11 9 35 35 H 1.09000 * 110.46848 * 32.04792 * 13 11 9 36 36 H 1.08997 * 110.37381 * 200.65780 * 15 14 13 37 37 H 1.08996 * 110.37231 * 78.32160 * 15 14 13 38 38 H 1.09004 * 109.45774 * 181.38812 * 18 4 2 39 39 H 1.08994 * 109.46444 * 301.34629 * 18 4 2 40 40 H 1.09002 * 109.49753 * 58.58530 * 19 18 4 41 41 H 1.08997 * 109.49700 * 178.68084 * 19 18 4 42 42 H 1.08996 * 109.58354 * 174.42350 * 20 19 18 43 43 H 1.08995 * 109.58776 * 294.70107 * 20 19 18 44 44 H 0.96997 * 119.99571 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 -1.2454 5 1 1.6028 -1.7253 -1.2920 6 7 1.6705 0.0267 -2.4436 7 6 1.5503 -0.6043 -3.6283 8 8 1.7505 -1.7983 -3.7027 9 6 1.1606 0.1724 -4.8596 10 1 0.4659 0.9959 -4.6947 11 6 2.2245 0.3553 -5.9437 12 1 3.2393 -0.0041 -5.7731 13 6 2.0122 1.4725 -6.9892 14 8 1.2131 0.8612 -8.0254 15 6 0.2445 0.0475 -7.3287 16 6 1.0349 -0.6038 -6.1721 17 1 1.1346 -1.6892 -6.1715 18 6 3.5674 -0.8481 -1.1701 19 6 3.9568 -1.6659 0.0635 20 6 3.4649 -0.9471 1.3237 21 7 2.0225 -0.6996 1.1945 22 6 1.1535 -1.1135 2.1685 23 1 0.1358 -1.3680 1.9117 24 6 1.5807 -1.2060 3.4860 25 7 2.7038 -0.6278 3.8559 26 14 0.5617 -2.1511 4.7341 27 1 0.9961 -3.5710 4.7544 28 1 0.7523 -1.5560 6.0813 29 1 -0.8732 -2.0777 4.3590 30 1 -0.3635 -1.0276 0.0064 31 1 -0.3633 0.5195 0.8867 32 1 -0.3634 0.5083 -0.8932 33 1 1.5100 0.9814 -2.3841 34 1 2.9698 1.8015 -7.3929 35 1 1.4792 2.3135 -6.5455 36 1 -0.1558 -0.7183 -7.9931 37 1 -0.5604 0.6686 -6.9358 38 1 3.9377 -1.3450 -2.0669 39 1 4.0061 0.1471 -1.0993 40 1 3.4981 -2.6530 0.0052 41 1 5.0410 -1.7698 0.1037 42 1 3.6517 -1.5719 2.1970 43 1 3.9921 0.0006 1.4330 44 1 3.0025 -0.6927 4.7764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993683895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:24 Heat of formation + Delta-G solvation = -30.294167 kcal Electronic energy + Delta-G solvation = -24370.125584 eV Core-core repulsion = 20902.918580 eV Total energy + Delta-G solvation = -3467.207004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90789 -39.33147 -37.62412 -34.80158 -34.31335 -32.58939 -31.69617 -29.37871 -29.04527 -26.79485 -25.81489 -24.99771 -22.95715 -21.54782 -20.93556 -20.72592 -20.11026 -19.35292 -17.64929 -16.54167 -16.07551 -16.05862 -15.51923 -15.41678 -14.88363 -14.62749 -14.15625 -13.79404 -13.70456 -13.41614 -13.20441 -12.96079 -12.76771 -12.57965 -12.07051 -11.85466 -11.74430 -11.57434 -11.15612 -10.93702 -10.80288 -10.68123 -10.60324 -10.54163 -10.32813 -10.16456 -10.05259 -9.98886 -9.93237 -9.62544 -9.38918 -8.72146 -8.48023 -6.71236 -5.82059 -3.26867 2.39563 3.11635 3.36128 3.40302 3.43564 3.44238 3.68993 4.25792 4.28594 4.47351 4.56623 4.58801 4.81575 4.94114 5.02130 5.25873 5.32366 5.33385 5.37919 5.40492 5.48863 5.58083 5.70110 5.75588 5.84308 5.93348 6.04936 6.17577 6.29475 6.35137 6.36765 6.49206 6.59526 6.68021 6.71995 6.81888 6.94817 7.03111 7.37411 7.65009 7.69484 7.78845 8.34899 8.42649 9.17267 9.79742 10.35698 11.26462 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034056 B = 0.003271 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.982275 B = 8556.923782 C = 8885.587397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.130 3.870 5 H 0.086 0.914 6 N -0.711 5.711 7 C 0.540 3.460 8 O -0.540 6.540 9 C -0.147 4.147 10 H 0.123 0.877 11 C -0.168 4.168 12 H 0.127 0.873 13 C 0.074 3.926 14 O -0.373 6.373 15 C 0.073 3.927 16 C -0.161 4.161 17 H 0.135 0.865 18 C -0.116 4.116 19 C -0.140 4.140 20 C 0.169 3.831 21 N -0.582 5.582 22 C -0.253 4.253 23 H 0.071 0.929 24 C 0.004 3.996 25 N -0.903 5.903 26 Si 0.903 3.097 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.397 0.603 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 4.965 -18.047 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.025 3.975 5 H 0.104 0.896 6 N -0.361 5.361 7 C 0.325 3.675 8 O -0.417 6.417 9 C -0.168 4.168 10 H 0.140 0.860 11 C -0.187 4.187 12 H 0.145 0.855 13 C -0.002 4.002 14 O -0.291 6.291 15 C -0.004 4.004 16 C -0.180 4.180 17 H 0.153 0.847 18 C -0.155 4.155 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.305 5.305 22 C -0.382 4.382 23 H 0.089 0.911 24 C -0.195 4.195 25 N -0.547 5.547 26 Si 0.733 3.267 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.231 0.769 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.591 4.141 -18.123 18.659 hybrid contribution -0.443 -0.040 1.084 1.172 sum -2.034 4.102 -17.039 17.644 Atomic orbital electron populations 1.21819 0.95639 1.01734 1.00214 1.20561 0.93250 0.93565 0.86642 0.95457 1.21832 0.95153 0.96855 0.83690 0.89604 1.46060 1.69610 1.12247 1.08153 1.19394 0.77140 0.87299 0.83641 1.90708 1.50461 1.14929 1.85588 1.22446 1.02692 1.02216 0.89495 0.85959 1.24171 0.96083 0.99606 0.98864 0.85474 1.22942 0.96503 0.93612 0.87169 1.89190 1.46921 1.63292 1.29741 1.22965 0.90995 0.93919 0.92493 1.24173 0.99518 1.00021 0.94269 0.84717 1.21756 0.95345 1.00058 0.98336 1.22189 0.99247 0.99711 0.96875 1.20847 0.83031 0.97246 0.94525 1.44040 1.03177 1.65064 1.18256 1.19191 0.94853 1.38003 0.86186 0.91127 1.25078 0.97832 0.99604 0.96943 1.70021 1.23332 1.44384 1.16943 0.86281 0.79834 0.79816 0.80777 1.21403 1.21765 1.20408 0.92651 0.91735 0.94321 0.76907 0.88125 0.91597 0.88077 0.91698 0.93306 0.92747 0.92533 0.92988 0.89221 0.96300 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.84 37.16 0.29 -2.18 16 2 C 0.17 3.30 3.03 -67.60 -0.21 3.09 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.13 2.31 1.99 -67.81 -0.14 2.17 16 5 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 6 N -0.71 -9.92 4.58 -53.69 -0.25 -10.17 16 7 C 0.54 7.74 7.58 -10.99 -0.08 7.66 16 8 O -0.54 -9.95 16.01 5.55 0.09 -9.86 16 9 C -0.15 -1.52 5.73 -91.78 -0.53 -2.05 16 10 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.17 -1.60 6.91 -89.06 -0.62 -2.22 16 12 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 13 C 0.07 0.60 7.44 37.94 0.28 0.88 16 14 O -0.37 -3.77 11.65 -35.23 -0.41 -4.18 16 15 C 0.07 0.62 7.44 37.94 0.28 0.90 16 16 C -0.16 -1.64 6.65 -89.05 -0.59 -2.23 16 17 H 0.13 1.55 7.82 -51.93 -0.41 1.14 16 18 C -0.12 -2.06 5.46 -26.69 -0.15 -2.21 16 19 C -0.14 -2.75 6.08 -26.61 -0.16 -2.91 16 20 C 0.17 3.96 5.29 -3.71 -0.02 3.94 16 21 N -0.58 -14.00 2.99 -164.78 -0.49 -14.49 16 22 C -0.25 -6.66 8.61 -15.06 -0.13 -6.79 16 23 H 0.07 1.82 6.20 -52.49 -0.33 1.50 16 24 C 0.00 0.11 4.96 -17.43 -0.09 0.03 16 25 N -0.90 -25.55 11.14 55.49 0.62 -24.93 16 26 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.05 1.06 7.40 -51.93 -0.38 0.68 16 31 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 32 H 0.04 0.57 7.79 -51.93 -0.40 0.16 16 33 H 0.40 4.46 8.60 -40.82 -0.35 4.11 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -30.90 347.38 -9.27 -40.17 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.19 Total: 3.81 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.84 Total: -1.92 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.12 Total: -49.60 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.32 Total: -14.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.90 -9.27 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993683895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.875 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds