Wall clock time and date at job start Tue Mar 31 2020 07:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70512 * 2 1 4 4 C 1.53199 * 109.58457 * 239.64130 * 2 1 3 5 5 H 1.08996 * 109.52441 * 305.55384 * 4 2 1 6 6 N 1.46505 * 109.49413 * 65.62848 * 4 2 1 7 7 C 1.34772 * 119.99859 * 204.83488 * 6 4 2 8 8 O 1.21287 * 120.00211 * 0.02562 * 7 6 4 9 9 C 1.50704 * 119.99969 * 179.72912 * 7 6 4 10 10 H 1.09002 * 115.50622 * 325.64143 * 9 7 6 11 11 C 1.52990 * 117.43347 * 110.93040 * 9 7 6 12 12 H 1.09000 * 119.80927 * 355.36244 * 11 9 7 13 13 C 1.54483 * 118.06273 * 198.08658 * 11 9 7 14 14 O 1.44426 * 104.80204 * 273.16838 * 13 11 9 15 15 C 1.44420 * 105.27463 * 40.51257 * 14 13 11 16 16 C 1.52998 * 117.43165 * 180.27865 * 9 7 6 17 17 H 1.09003 * 119.80837 * 5.64912 * 16 9 7 18 18 C 1.53034 * 109.31001 * 185.57938 * 4 2 1 19 19 C 1.53043 * 109.53900 * 61.36999 * 18 4 2 20 20 C 1.53189 * 109.30932 * 298.63168 * 19 18 4 21 21 N 1.46925 * 109.58370 * 120.35863 * 2 1 3 22 22 C 1.36936 * 120.62997 * 353.41261 * 21 2 1 23 23 H 1.07998 * 120.00463 * 29.00706 * 22 21 2 24 24 C 1.38817 * 119.99790 * 209.00199 * 22 21 2 25 25 N 1.31623 * 120.00045 * 15.02674 * 24 22 21 26 26 Si 1.86796 * 119.99831 * 195.02804 * 24 22 21 27 27 H 1.48494 * 109.47374 * 90.00298 * 26 24 22 28 28 H 1.48506 * 109.47211 * 209.99802 * 26 24 22 29 29 H 1.48496 * 109.47335 * 329.99795 * 26 24 22 30 30 H 1.09001 * 109.47755 * 180.35493 * 1 2 3 31 31 H 1.09000 * 109.47098 * 300.36258 * 1 2 3 32 32 H 1.09003 * 109.47187 * 60.35534 * 1 2 3 33 33 H 0.96995 * 120.00186 * 24.83978 * 6 4 2 34 34 H 1.09005 * 110.37237 * 154.34175 * 13 11 9 35 35 H 1.09000 * 110.46848 * 32.04792 * 13 11 9 36 36 H 1.08997 * 110.37381 * 200.65780 * 15 14 13 37 37 H 1.08996 * 110.37231 * 78.32160 * 15 14 13 38 38 H 1.09004 * 109.45774 * 181.38812 * 18 4 2 39 39 H 1.08994 * 109.46444 * 301.34629 * 18 4 2 40 40 H 1.09002 * 109.49753 * 58.58530 * 19 18 4 41 41 H 1.08997 * 109.49700 * 178.68084 * 19 18 4 42 42 H 1.08996 * 109.58354 * 174.42350 * 20 19 18 43 43 H 1.08995 * 109.58776 * 294.70107 * 20 19 18 44 44 H 0.96997 * 119.99571 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 -1.2454 5 1 1.6028 -1.7253 -1.2920 6 7 1.6705 0.0267 -2.4436 7 6 1.5503 -0.6043 -3.6283 8 8 1.7505 -1.7983 -3.7027 9 6 1.1606 0.1724 -4.8596 10 1 0.4659 0.9959 -4.6947 11 6 2.2245 0.3553 -5.9437 12 1 3.2393 -0.0041 -5.7731 13 6 2.0122 1.4725 -6.9892 14 8 1.2131 0.8612 -8.0254 15 6 0.2445 0.0475 -7.3287 16 6 1.0349 -0.6038 -6.1721 17 1 1.1346 -1.6892 -6.1715 18 6 3.5674 -0.8481 -1.1701 19 6 3.9568 -1.6659 0.0635 20 6 3.4649 -0.9471 1.3237 21 7 2.0225 -0.6996 1.1945 22 6 1.1535 -1.1135 2.1685 23 1 0.1358 -1.3680 1.9117 24 6 1.5807 -1.2060 3.4860 25 7 2.7038 -0.6278 3.8559 26 14 0.5617 -2.1511 4.7341 27 1 0.9961 -3.5710 4.7544 28 1 0.7523 -1.5560 6.0813 29 1 -0.8732 -2.0777 4.3590 30 1 -0.3635 -1.0276 0.0064 31 1 -0.3633 0.5195 0.8867 32 1 -0.3634 0.5083 -0.8932 33 1 1.5100 0.9814 -2.3841 34 1 2.9698 1.8015 -7.3929 35 1 1.4792 2.3135 -6.5455 36 1 -0.1558 -0.7183 -7.9931 37 1 -0.5604 0.6686 -6.9358 38 1 3.9377 -1.3450 -2.0669 39 1 4.0061 0.1471 -1.0993 40 1 3.4981 -2.6530 0.0052 41 1 5.0410 -1.7698 0.1037 42 1 3.6517 -1.5719 2.1970 43 1 3.9921 0.0006 1.4330 44 1 3.0025 -0.6927 4.7764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993683895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:23 Heat of formation + Delta-G solvation = -50.467503 kcal Electronic energy + Delta-G solvation = -24371.000365 eV Core-core repulsion = 20902.918580 eV Total energy + Delta-G solvation = -3468.081785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79201 -40.51729 -39.10189 -35.97003 -35.52503 -34.25877 -33.41769 -31.06138 -29.66985 -28.16951 -27.13794 -26.65271 -24.21120 -22.81029 -22.32172 -21.67592 -21.35103 -20.84523 -18.72482 -18.23590 -17.41830 -16.94087 -16.86627 -16.31758 -16.07700 -15.83377 -15.61750 -15.55752 -15.11646 -14.88612 -14.53612 -14.31518 -13.99006 -13.54936 -13.36144 -13.27137 -12.84122 -12.83533 -12.71924 -12.57018 -12.51289 -12.37174 -12.00815 -11.84028 -11.79851 -11.63912 -11.42966 -11.31742 -11.20903 -10.84832 -10.63002 -10.53507 -10.03427 -8.66892 -7.86201 -5.32464 1.35911 1.46280 1.48825 1.56030 2.01159 2.50602 2.55110 3.06137 3.29310 3.40217 3.52971 3.64524 3.77138 3.88856 3.89342 4.01715 4.11247 4.15266 4.19604 4.34649 4.42924 4.51131 4.60779 4.69318 4.77120 4.78150 4.83060 4.87198 4.91534 4.99418 5.01510 5.07159 5.11392 5.20714 5.27695 5.44703 5.47766 5.59067 5.69656 5.73916 5.76008 6.41034 6.57408 7.15494 7.24835 7.85919 8.36941 9.20618 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034056 B = 0.003271 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.982275 B = 8556.923782 C = 8885.587397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.036 0.964 4 C 0.147 3.853 5 H 0.055 0.945 6 N -0.700 5.700 7 C 0.539 3.461 8 O -0.585 6.585 9 C -0.141 4.141 10 H 0.156 0.844 11 C -0.162 4.162 12 H 0.119 0.881 13 C 0.076 3.924 14 O -0.392 6.392 15 C 0.077 3.923 16 C -0.171 4.171 17 H 0.114 0.886 18 C -0.108 4.108 19 C -0.130 4.130 20 C 0.176 3.824 21 N -0.601 5.601 22 C -0.254 4.254 23 H 0.073 0.927 24 C -0.048 4.048 25 N -0.933 5.933 26 Si 0.961 3.039 27 H -0.290 1.290 28 H -0.295 1.295 29 H -0.268 1.268 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.415 0.585 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.005 0.995 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 6.460 -20.018 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.058 3.942 3 H 0.054 0.946 4 C 0.040 3.960 5 H 0.073 0.927 6 N -0.350 5.350 7 C 0.326 3.674 8 O -0.465 6.465 9 C -0.161 4.161 10 H 0.173 0.827 11 C -0.181 4.181 12 H 0.137 0.863 13 C 0.000 4.000 14 O -0.311 6.311 15 C 0.001 3.999 16 C -0.190 4.190 17 H 0.132 0.868 18 C -0.147 4.147 19 C -0.170 4.170 20 C 0.050 3.950 21 N -0.325 5.325 22 C -0.384 4.384 23 H 0.090 0.910 24 C -0.244 4.244 25 N -0.580 5.580 26 Si 0.790 3.210 27 H -0.217 1.217 28 H -0.222 1.222 29 H -0.193 1.193 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.252 0.748 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.023 0.977 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.571 5.672 -20.131 21.072 hybrid contribution -0.126 -0.517 1.637 1.721 sum -2.696 5.156 -18.494 19.387 Atomic orbital electron populations 1.21736 0.94372 1.01026 1.01414 1.20729 0.94344 0.93534 0.85613 0.94638 1.21309 0.94820 0.95501 0.84383 0.92653 1.45824 1.69312 1.12881 1.06991 1.20051 0.75863 0.86939 0.84510 1.90697 1.52327 1.17211 1.86290 1.22378 1.03801 1.02509 0.87453 0.82698 1.24232 0.95386 1.00041 0.98401 0.86346 1.23096 0.97361 0.93248 0.86290 1.89178 1.47522 1.63644 1.30782 1.23048 0.90820 0.94257 0.91821 1.24186 1.00784 0.99236 0.94833 0.86814 1.21674 0.95421 1.00357 0.97254 1.22029 1.00295 0.98708 0.95972 1.20633 0.83182 0.96177 0.95003 1.44283 1.03144 1.65887 1.19190 1.19470 0.95183 1.36992 0.86779 0.90953 1.25754 0.99041 1.00901 0.98679 1.70159 1.24907 1.46048 1.16838 0.85359 0.79040 0.78184 0.78441 1.21705 1.22173 1.19268 0.94228 0.93224 0.90411 0.74805 0.86835 0.89494 0.87232 0.89814 0.92883 0.91395 0.93925 0.90974 0.92653 0.97698 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 7.84 71.98 0.56 -3.89 16 2 C 0.16 6.30 3.03 44.98 0.14 6.44 16 3 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.15 5.04 1.99 45.07 0.09 5.13 16 5 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 6 N -0.70 -17.86 4.58 -442.15 -2.02 -19.88 16 7 C 0.54 14.47 7.58 87.66 0.66 15.13 16 8 O -0.59 -21.36 16.01 -3.05 -0.05 -21.41 16 9 C -0.14 -2.50 5.73 -11.54 -0.07 -2.56 16 10 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 11 C -0.16 -2.67 6.91 -9.78 -0.07 -2.74 16 12 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 13 C 0.08 0.97 7.44 72.49 0.54 1.51 16 14 O -0.39 -6.81 11.65 -148.98 -1.74 -8.54 16 15 C 0.08 1.09 7.44 72.49 0.54 1.63 16 16 C -0.17 -3.17 6.65 -9.78 -0.07 -3.23 16 17 H 0.11 2.60 7.82 -2.39 -0.02 2.58 16 18 C -0.11 -3.72 5.46 30.62 0.17 -3.55 16 19 C -0.13 -5.10 6.08 30.67 0.19 -4.92 16 20 C 0.18 8.39 5.29 86.36 0.46 8.85 16 21 N -0.60 -29.18 2.99 -675.24 -2.02 -31.20 16 22 C -0.25 -13.53 8.61 84.03 0.72 -12.81 16 23 H 0.07 3.76 6.20 -2.91 -0.02 3.74 16 24 C -0.05 -2.66 4.96 84.86 0.42 -2.23 16 25 N -0.93 -54.23 11.14 21.65 0.24 -53.99 16 26 Si 0.96 44.59 29.58 68.60 2.03 46.62 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 H 0.04 1.49 7.40 -2.39 -0.02 1.47 16 31 H 0.05 1.86 7.66 -2.39 -0.02 1.85 16 32 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 33 H 0.42 7.80 8.60 -92.71 -0.80 7.01 16 34 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.06 3.02 6.06 -2.39 -0.01 3.00 16 43 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -68.62 347.38 0.93 -67.69 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.20 Total: 17.96 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.29 Total: 2.75 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.80 Total: -105.07 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -1.78 Total: -29.95 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.62 0.93 -67.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993683895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.226 kcal (2) G-P(sol) polarization free energy of solvation -68.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds