Wall clock time and date at job start Tue Mar 31 2020 07:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.70494 * 2 1 4 4 C 1.53200 * 109.58556 * 120.34960 * 2 1 3 5 5 H 1.08997 * 109.49789 * 294.37873 * 4 2 1 6 6 N 1.46506 * 109.49256 * 54.47277 * 4 2 1 7 7 C 1.34777 * 119.99647 * 204.83713 * 6 4 2 8 8 O 1.21282 * 119.99964 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99778 * 180.02562 * 7 6 4 10 10 H 1.09000 * 115.51101 * 325.36639 * 9 7 6 11 11 C 1.53005 * 117.43438 * 110.65130 * 9 7 6 12 12 H 1.08992 * 119.80746 * 355.36969 * 11 9 7 13 13 C 1.54478 * 118.06612 * 198.08235 * 11 9 7 14 14 O 1.44428 * 104.80340 * 273.17618 * 13 11 9 15 15 C 1.44420 * 105.27745 * 40.50935 * 14 13 11 16 16 C 1.53001 * 117.43327 * 180.02562 * 9 7 6 17 17 H 1.08999 * 119.80721 * 5.64823 * 16 9 7 18 18 C 1.53037 * 109.31394 * 174.42256 * 4 2 1 19 19 C 1.53042 * 109.53862 * 298.63771 * 18 4 2 20 20 C 1.53196 * 109.31425 * 61.36353 * 19 18 4 21 21 N 1.46922 * 109.58877 * 239.64191 * 2 1 3 22 22 C 1.36936 * 120.62947 * 6.62432 * 21 2 1 23 23 H 1.08001 * 120.00124 * 330.15651 * 22 21 2 24 24 C 1.38815 * 119.99753 * 150.15356 * 22 21 2 25 25 N 1.31612 * 120.00090 * 344.49301 * 24 22 21 26 26 Si 1.86801 * 119.99901 * 164.48967 * 24 22 21 27 27 H 1.48513 * 109.46839 * 90.00053 * 26 24 22 28 28 H 1.48493 * 109.47258 * 209.99663 * 26 24 22 29 29 H 1.48499 * 109.47296 * 330.00255 * 26 24 22 30 30 H 1.09000 * 109.47105 * 299.65013 * 1 2 3 31 31 H 1.08995 * 109.46881 * 59.64974 * 1 2 3 32 32 H 1.09003 * 109.46778 * 179.64651 * 1 2 3 33 33 H 0.96994 * 120.00333 * 24.83533 * 6 4 2 34 34 H 1.08997 * 110.37355 * 154.34259 * 13 11 9 35 35 H 1.09005 * 110.46654 * 32.05264 * 13 11 9 36 36 H 1.08999 * 110.36908 * 200.65804 * 15 14 13 37 37 H 1.09007 * 110.36820 * 78.32307 * 15 14 13 38 38 H 1.08997 * 109.45742 * 58.65274 * 18 4 2 39 39 H 1.08993 * 109.46330 * 178.61807 * 18 4 2 40 40 H 1.08995 * 109.49831 * 181.31417 * 19 18 4 41 41 H 1.09006 * 109.49889 * 301.38311 * 19 18 4 42 42 H 1.09005 * 109.58750 * 65.14942 * 20 19 18 43 43 H 1.08999 * 109.59102 * 185.58042 * 20 19 18 44 44 H 0.97004 * 120.00272 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7293 1.2456 5 1 1.7660 -0.1667 2.1369 6 7 1.4513 -2.0679 1.3073 7 6 1.3313 -2.6976 2.4928 8 8 1.7131 -2.1559 3.5086 9 6 0.7227 -4.0747 2.5562 10 1 -0.0787 -4.2671 1.8428 11 6 1.6510 -5.2404 2.9033 12 1 2.7206 -5.0655 3.0183 13 6 1.1777 -6.6717 2.5660 14 8 0.4039 -7.0845 3.7136 15 6 -0.3617 -5.9209 4.0949 16 6 0.6143 -4.7348 3.9323 17 1 0.8854 -4.1725 4.8258 18 6 3.5675 -0.8479 1.1704 19 6 3.9570 -1.6657 -0.0632 20 6 3.4651 -0.9471 -1.3236 21 7 2.0226 -0.6996 -1.1944 22 6 1.1538 -1.1128 -2.1689 23 1 0.1398 -1.3798 -1.9104 24 6 1.5765 -1.1884 -3.4889 25 7 2.6872 -0.5876 -3.8597 26 14 0.5689 -2.1431 -4.7390 27 1 -0.4249 -1.2372 -5.3694 28 1 1.4691 -2.6938 -5.7837 29 1 -0.1387 -3.2568 -4.0579 30 1 -0.3633 0.5084 0.8931 31 1 -0.3633 0.5192 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.1457 -2.5009 0.4950 34 1 2.0339 -7.3319 2.4283 35 1 0.5556 -6.6665 1.6709 36 1 -0.6880 -6.0044 5.1315 37 1 -1.2204 -5.7986 3.4346 38 1 4.0061 0.1474 1.0994 39 1 3.9378 -1.3447 2.0670 40 1 5.0412 -1.7696 -0.1034 41 1 3.4988 -2.6531 -0.0047 42 1 3.9904 0.0020 -1.4316 43 1 3.6519 -1.5719 -2.1970 44 1 2.9824 -0.6401 -4.7822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993683896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:27 Heat of formation + Delta-G solvation = -29.645921 kcal Electronic energy + Delta-G solvation = -25006.865238 eV Core-core repulsion = 21539.686345 eV Total energy + Delta-G solvation = -3467.178894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77359 -39.33405 -37.56632 -34.63775 -33.95446 -32.44542 -31.71526 -29.53495 -28.91465 -26.70798 -25.82454 -25.03530 -22.81590 -21.68809 -20.86171 -20.78503 -19.98121 -18.76605 -17.62876 -16.51956 -16.03667 -15.84298 -15.32857 -15.26459 -14.87313 -14.65331 -14.07414 -13.91350 -13.56400 -13.22297 -13.11871 -12.89985 -12.75828 -12.59096 -11.95690 -11.88861 -11.71687 -11.32194 -11.28012 -11.03191 -10.73897 -10.70098 -10.56836 -10.52412 -10.40219 -10.16542 -10.06272 -9.85157 -9.72139 -9.55870 -9.35020 -8.60511 -8.49778 -6.72165 -5.86611 -3.32222 2.55623 3.30216 3.30392 3.38132 3.38847 3.58743 3.82130 4.39735 4.43736 4.45710 4.71353 4.73983 4.96399 5.12625 5.17428 5.26250 5.28465 5.45890 5.49296 5.52206 5.53349 5.60925 5.70017 5.85333 5.91606 5.95657 6.07690 6.17648 6.28056 6.36994 6.47828 6.48106 6.62575 6.63199 6.73309 6.89171 6.92070 7.05372 7.32717 7.60700 7.72561 7.95833 8.36797 8.55015 9.12738 9.75720 10.33283 11.21419 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.004835 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.833798 B = 5790.241337 C = 6619.372340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.134 3.866 5 H 0.076 0.924 6 N -0.693 5.693 7 C 0.539 3.461 8 O -0.553 6.553 9 C -0.146 4.146 10 H 0.122 0.878 11 C -0.166 4.166 12 H 0.126 0.874 13 C 0.074 3.926 14 O -0.374 6.374 15 C 0.073 3.927 16 C -0.162 4.162 17 H 0.134 0.866 18 C -0.121 4.121 19 C -0.140 4.140 20 C 0.172 3.828 21 N -0.585 5.585 22 C -0.258 4.258 23 H 0.070 0.930 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.410 0.590 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.085 0.915 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -7.357 11.205 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.057 0.943 4 C 0.028 3.972 5 H 0.094 0.906 6 N -0.343 5.343 7 C 0.324 3.676 8 O -0.432 6.432 9 C -0.167 4.167 10 H 0.140 0.860 11 C -0.185 4.185 12 H 0.144 0.856 13 C -0.003 4.003 14 O -0.292 6.292 15 C -0.004 4.004 16 C -0.181 4.181 17 H 0.151 0.849 18 C -0.159 4.159 19 C -0.179 4.179 20 C 0.046 3.954 21 N -0.309 5.309 22 C -0.387 4.387 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.542 5.542 26 Si 0.729 3.271 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.246 0.754 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.104 0.896 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.703 -7.160 11.819 14.080 hybrid contribution -0.453 -0.278 -1.338 1.440 sum -3.156 -7.438 10.481 13.233 Atomic orbital electron populations 1.21779 0.95614 1.01435 1.00452 1.20729 0.93372 0.93934 0.86819 0.94277 1.21567 0.92938 0.82902 0.99842 0.90633 1.45927 1.60991 1.18474 1.08865 1.19388 0.78632 0.85716 0.83880 1.90657 1.50617 1.67282 1.34691 1.22431 1.02317 0.92137 0.99806 0.85987 1.24145 0.98088 0.92486 1.03772 0.85562 1.22950 0.95721 0.92541 0.89082 1.89177 1.59036 1.33735 1.47291 1.22951 0.93001 0.82815 1.01609 1.24154 0.99654 1.00252 0.94055 0.84864 1.21765 0.95461 1.00490 0.98215 1.22141 0.98926 0.99560 0.97289 1.20788 0.83180 0.97142 0.94255 1.44155 1.03100 1.64866 1.18806 1.19117 0.95168 1.38291 0.86148 0.91283 1.25104 0.97751 0.99324 0.97005 1.70019 1.23967 1.43488 1.16752 0.86364 0.79423 0.79937 0.81381 1.21427 1.21635 1.20493 0.94212 0.91756 0.92808 0.75351 0.88132 0.91464 0.88216 0.91737 0.91900 0.93223 0.93477 0.92829 0.96393 0.89649 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.73 37.16 0.29 -2.09 16 2 C 0.16 3.05 3.20 -67.60 -0.22 2.83 16 3 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.13 2.32 2.32 -67.80 -0.16 2.16 16 5 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 6 N -0.69 -11.17 3.47 -53.68 -0.19 -11.36 16 7 C 0.54 8.48 7.58 -10.99 -0.08 8.39 16 8 O -0.55 -10.34 16.01 5.56 0.09 -10.25 16 9 C -0.15 -1.81 5.73 -91.77 -0.53 -2.34 16 10 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 11 C -0.17 -1.91 6.92 -89.02 -0.62 -2.53 16 12 H 0.13 1.51 8.14 -51.93 -0.42 1.08 16 13 C 0.07 0.75 7.44 37.93 0.28 1.03 16 14 O -0.37 -4.36 11.65 -35.23 -0.41 -4.77 16 15 C 0.07 0.72 7.44 37.92 0.28 1.00 16 16 C -0.16 -1.87 6.65 -89.03 -0.59 -2.46 16 17 H 0.13 1.65 7.82 -51.93 -0.41 1.25 16 18 C -0.12 -2.10 5.58 -26.69 -0.15 -2.25 16 19 C -0.14 -2.58 5.93 -26.61 -0.16 -2.74 16 20 C 0.17 3.83 5.28 -3.71 -0.02 3.81 16 21 N -0.59 -13.09 2.64 -164.76 -0.44 -13.53 16 22 C -0.26 -6.30 8.58 -15.06 -0.13 -6.43 16 23 H 0.07 1.63 6.23 -52.49 -0.33 1.31 16 24 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 25 N -0.90 -24.68 11.23 55.49 0.62 -24.05 16 26 Si 0.90 20.39 29.58 -169.99 -5.03 15.36 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 32 H 0.05 0.92 6.37 -51.93 -0.33 0.59 16 33 H 0.41 6.75 7.77 -40.82 -0.32 6.43 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.14 6.15 -51.93 -0.32 1.82 16 44 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -28.57 344.33 -9.13 -37.70 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.09 Total: 7.19 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.88 Total: -1.49 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.00 Total: -48.94 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.32 Total: -15.01 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.57 -9.13 -37.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993683896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.054 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds