Wall clock time and date at job start Tue Mar 31 2020 07:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.70494 * 2 1 4 4 C 1.53200 * 109.58556 * 120.34960 * 2 1 3 5 5 H 1.08997 * 109.49789 * 294.37873 * 4 2 1 6 6 N 1.46506 * 109.49256 * 54.47277 * 4 2 1 7 7 C 1.34777 * 119.99647 * 204.83713 * 6 4 2 8 8 O 1.21282 * 119.99964 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99778 * 180.02562 * 7 6 4 10 10 H 1.09000 * 115.51101 * 325.36639 * 9 7 6 11 11 C 1.53005 * 117.43438 * 110.65130 * 9 7 6 12 12 H 1.08992 * 119.80746 * 355.36969 * 11 9 7 13 13 C 1.54478 * 118.06612 * 198.08235 * 11 9 7 14 14 O 1.44428 * 104.80340 * 273.17618 * 13 11 9 15 15 C 1.44420 * 105.27745 * 40.50935 * 14 13 11 16 16 C 1.53001 * 117.43327 * 180.02562 * 9 7 6 17 17 H 1.08999 * 119.80721 * 5.64823 * 16 9 7 18 18 C 1.53037 * 109.31394 * 174.42256 * 4 2 1 19 19 C 1.53042 * 109.53862 * 298.63771 * 18 4 2 20 20 C 1.53196 * 109.31425 * 61.36353 * 19 18 4 21 21 N 1.46922 * 109.58877 * 239.64191 * 2 1 3 22 22 C 1.36936 * 120.62947 * 6.62432 * 21 2 1 23 23 H 1.08001 * 120.00124 * 330.15651 * 22 21 2 24 24 C 1.38815 * 119.99753 * 150.15356 * 22 21 2 25 25 N 1.31612 * 120.00090 * 344.49301 * 24 22 21 26 26 Si 1.86801 * 119.99901 * 164.48967 * 24 22 21 27 27 H 1.48513 * 109.46839 * 90.00053 * 26 24 22 28 28 H 1.48493 * 109.47258 * 209.99663 * 26 24 22 29 29 H 1.48499 * 109.47296 * 330.00255 * 26 24 22 30 30 H 1.09000 * 109.47105 * 299.65013 * 1 2 3 31 31 H 1.08995 * 109.46881 * 59.64974 * 1 2 3 32 32 H 1.09003 * 109.46778 * 179.64651 * 1 2 3 33 33 H 0.96994 * 120.00333 * 24.83533 * 6 4 2 34 34 H 1.08997 * 110.37355 * 154.34259 * 13 11 9 35 35 H 1.09005 * 110.46654 * 32.05264 * 13 11 9 36 36 H 1.08999 * 110.36908 * 200.65804 * 15 14 13 37 37 H 1.09007 * 110.36820 * 78.32307 * 15 14 13 38 38 H 1.08997 * 109.45742 * 58.65274 * 18 4 2 39 39 H 1.08993 * 109.46330 * 178.61807 * 18 4 2 40 40 H 1.08995 * 109.49831 * 181.31417 * 19 18 4 41 41 H 1.09006 * 109.49889 * 301.38311 * 19 18 4 42 42 H 1.09005 * 109.58750 * 65.14942 * 20 19 18 43 43 H 1.08999 * 109.59102 * 185.58042 * 20 19 18 44 44 H 0.97004 * 120.00272 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7293 1.2456 5 1 1.7660 -0.1667 2.1369 6 7 1.4513 -2.0679 1.3073 7 6 1.3313 -2.6976 2.4928 8 8 1.7131 -2.1559 3.5086 9 6 0.7227 -4.0747 2.5562 10 1 -0.0787 -4.2671 1.8428 11 6 1.6510 -5.2404 2.9033 12 1 2.7206 -5.0655 3.0183 13 6 1.1777 -6.6717 2.5660 14 8 0.4039 -7.0845 3.7136 15 6 -0.3617 -5.9209 4.0949 16 6 0.6143 -4.7348 3.9323 17 1 0.8854 -4.1725 4.8258 18 6 3.5675 -0.8479 1.1704 19 6 3.9570 -1.6657 -0.0632 20 6 3.4651 -0.9471 -1.3236 21 7 2.0226 -0.6996 -1.1944 22 6 1.1538 -1.1128 -2.1689 23 1 0.1398 -1.3798 -1.9104 24 6 1.5765 -1.1884 -3.4889 25 7 2.6872 -0.5876 -3.8597 26 14 0.5689 -2.1431 -4.7390 27 1 -0.4249 -1.2372 -5.3694 28 1 1.4691 -2.6938 -5.7837 29 1 -0.1387 -3.2568 -4.0579 30 1 -0.3633 0.5084 0.8931 31 1 -0.3633 0.5192 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.1457 -2.5009 0.4950 34 1 2.0339 -7.3319 2.4283 35 1 0.5556 -6.6665 1.6709 36 1 -0.6880 -6.0044 5.1315 37 1 -1.2204 -5.7986 3.4346 38 1 4.0061 0.1474 1.0994 39 1 3.9378 -1.3447 2.0670 40 1 5.0412 -1.7696 -0.1034 41 1 3.4988 -2.6531 -0.0047 42 1 3.9904 0.0020 -1.4316 43 1 3.6519 -1.5719 -2.1970 44 1 2.9824 -0.6401 -4.7822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993683896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:26 Heat of formation + Delta-G solvation = -46.354212 kcal Electronic energy + Delta-G solvation = -25007.589764 eV Core-core repulsion = 21539.686345 eV Total energy + Delta-G solvation = -3467.903420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.79033 -40.59423 -39.00543 -35.71711 -35.44833 -34.01249 -33.37285 -31.18927 -29.68598 -28.11707 -27.07465 -26.70627 -24.09637 -23.08265 -22.37289 -21.69663 -21.17855 -20.29922 -18.72854 -18.26297 -17.24179 -16.89493 -16.78412 -16.31331 -16.07314 -15.96371 -15.66745 -15.35586 -15.02743 -14.70126 -14.56232 -14.25673 -13.96091 -13.57112 -13.54157 -12.97673 -12.88468 -12.81109 -12.72528 -12.55190 -12.41471 -12.34470 -12.18228 -11.92909 -11.67996 -11.43400 -11.37742 -11.30651 -11.03460 -10.83400 -10.64445 -10.48740 -9.92931 -8.59697 -7.80750 -5.27512 1.40959 1.50437 1.53432 1.60452 2.14406 2.55080 2.56522 3.04825 3.36050 3.45947 3.55321 3.59639 3.79374 3.87943 3.98322 4.06331 4.11288 4.17311 4.20195 4.38940 4.41120 4.57196 4.65808 4.68149 4.75959 4.78896 4.81424 4.94731 4.97823 4.98660 5.03582 5.07198 5.12641 5.22501 5.34308 5.46358 5.55321 5.63637 5.71446 5.75647 5.80169 6.45376 6.66313 7.20412 7.27955 7.90427 8.44244 9.26032 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.004835 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.833798 B = 5790.241337 C = 6619.372340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.029 0.971 4 C 0.143 3.857 5 H 0.078 0.922 6 N -0.690 5.690 7 C 0.540 3.460 8 O -0.584 6.584 9 C -0.149 4.149 10 H 0.142 0.858 11 C -0.165 4.165 12 H 0.119 0.881 13 C 0.075 3.925 14 O -0.390 6.390 15 C 0.075 3.925 16 C -0.161 4.161 17 H 0.121 0.879 18 C -0.115 4.115 19 C -0.125 4.125 20 C 0.180 3.820 21 N -0.595 5.595 22 C -0.247 4.247 23 H 0.081 0.919 24 C -0.048 4.048 25 N -0.936 5.936 26 Si 0.958 3.042 27 H -0.292 1.292 28 H -0.302 1.302 29 H -0.264 1.264 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.410 0.590 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.055 0.945 42 H -0.007 1.007 43 H 0.055 0.945 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 -8.854 12.369 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.047 0.953 4 C 0.037 3.963 5 H 0.096 0.904 6 N -0.340 5.340 7 C 0.327 3.673 8 O -0.465 6.465 9 C -0.170 4.170 10 H 0.160 0.840 11 C -0.184 4.184 12 H 0.137 0.863 13 C -0.001 4.001 14 O -0.309 6.309 15 C -0.001 4.001 16 C -0.180 4.180 17 H 0.139 0.861 18 C -0.154 4.154 19 C -0.164 4.164 20 C 0.054 3.946 21 N -0.319 5.319 22 C -0.377 4.377 23 H 0.098 0.902 24 C -0.243 4.243 25 N -0.582 5.582 26 Si 0.787 3.213 27 H -0.219 1.219 28 H -0.229 1.229 29 H -0.188 1.188 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.247 0.753 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.011 0.989 43 H 0.073 0.927 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.113 -8.670 13.010 16.166 hybrid contribution -0.007 0.251 -1.624 1.643 sum -4.120 -8.419 11.386 14.748 Atomic orbital electron populations 1.21696 0.94100 1.01854 1.00812 1.20848 0.94631 0.93347 0.86236 0.95316 1.21325 0.92827 0.83581 0.98597 0.90381 1.45874 1.60961 1.17960 1.09170 1.19864 0.77826 0.86628 0.82969 1.90645 1.51954 1.68333 1.35587 1.22381 1.03088 0.90348 1.01152 0.84046 1.24205 0.97685 0.92985 1.03533 0.86304 1.23055 0.96349 0.91611 0.89082 1.89167 1.59442 1.34458 1.47852 1.23077 0.92657 0.81359 1.03032 1.24180 1.00304 1.00349 0.93130 0.86075 1.21712 0.95604 1.00473 0.97577 1.21942 0.99673 0.99090 0.95684 1.20564 0.83380 0.95685 0.94961 1.44329 1.02898 1.65373 1.19308 1.19473 0.95614 1.36316 0.86340 0.90151 1.25777 0.98880 1.00823 0.98857 1.70177 1.25900 1.45682 1.16470 0.85426 0.77782 0.78986 0.79112 1.21881 1.22857 1.18830 0.91844 0.93431 0.92256 0.75320 0.86848 0.90263 0.86672 0.90263 0.91636 0.92773 0.92114 0.92672 0.98893 0.92692 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.73 71.98 0.56 -3.68 16 2 C 0.16 5.85 3.20 44.98 0.14 5.99 16 3 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.14 4.76 2.32 45.07 0.10 4.87 16 5 H 0.08 2.62 7.58 -2.39 -0.02 2.60 16 6 N -0.69 -20.98 3.47 -442.15 -1.53 -22.51 16 7 C 0.54 16.00 7.58 87.66 0.66 16.67 16 8 O -0.58 -21.01 16.01 -3.03 -0.05 -21.06 16 9 C -0.15 -3.35 5.73 -11.54 -0.07 -3.41 16 10 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 11 C -0.17 -3.45 6.92 -9.76 -0.07 -3.51 16 12 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 13 C 0.08 1.32 7.44 72.48 0.54 1.86 16 14 O -0.39 -8.04 11.65 -148.98 -1.74 -9.78 16 15 C 0.07 1.26 7.44 72.48 0.54 1.80 16 16 C -0.16 -3.37 6.65 -9.77 -0.06 -3.43 16 17 H 0.12 2.86 7.82 -2.39 -0.02 2.84 16 18 C -0.12 -3.86 5.58 30.62 0.17 -3.68 16 19 C -0.12 -4.50 5.93 30.67 0.18 -4.32 16 20 C 0.18 8.12 5.28 86.36 0.46 8.57 16 21 N -0.60 -26.48 2.64 -675.19 -1.78 -28.27 16 22 C -0.25 -11.95 8.58 84.03 0.72 -11.23 16 23 H 0.08 3.66 6.23 -2.91 -0.02 3.65 16 24 C -0.05 -2.48 4.94 84.86 0.42 -2.06 16 25 N -0.94 -52.71 11.23 21.65 0.24 -52.46 16 26 Si 0.96 41.96 29.58 68.60 2.03 43.99 16 27 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 28 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 29 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.74 7.67 -2.39 -0.02 1.72 16 32 H 0.06 1.90 6.37 -2.39 -0.02 1.88 16 33 H 0.41 12.64 7.77 -92.71 -0.72 11.92 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 1.98 7.53 -2.38 -0.02 1.96 16 42 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 43 H 0.05 2.83 6.15 -2.39 -0.01 2.81 16 44 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -61.09 344.33 1.74 -59.35 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.28 Total: 26.33 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 4.30 Total: 4.42 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -3.08 Total: -103.24 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.78 Total: -30.84 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -61.09 1.74 -59.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993683896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.995 kcal (2) G-P(sol) polarization free energy of solvation -61.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds