Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 6 6 N 1.46498 * 109.38487 * 305.62932 * 4 2 1 7 7 C 1.34778 * 120.00257 * 155.14378 * 6 4 2 8 8 O 1.21277 * 119.99873 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00387 * 180.02562 * 7 6 4 10 10 H 1.09007 * 115.50809 * 325.58496 * 9 7 6 11 11 C 1.53001 * 117.43421 * 110.95058 * 9 7 6 12 12 H 1.09003 * 119.80405 * 355.36733 * 11 9 7 13 13 C 1.54540 * 118.02992 * 198.17287 * 11 9 7 14 14 O 1.44425 * 104.72390 * 273.04408 * 13 11 9 15 15 C 1.44420 * 105.27861 * 40.53145 * 14 13 11 16 16 C 1.52991 * 117.43505 * 180.21138 * 9 7 6 17 17 H 1.08998 * 119.80683 * 5.65070 * 16 9 7 18 18 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 19 19 C 1.53043 * 109.54140 * 61.23858 * 18 4 2 20 20 C 1.53193 * 109.30963 * 298.63474 * 19 18 4 21 21 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 22 22 C 1.36942 * 120.62997 * 353.41990 * 21 2 1 23 23 H 1.07996 * 119.99319 * 29.57864 * 22 21 2 24 24 C 1.38810 * 120.00133 * 209.57896 * 22 21 2 25 25 N 1.31624 * 120.00100 * 15.53431 * 24 22 21 26 26 Si 1.86793 * 119.99873 * 195.53048 * 24 22 21 27 27 H 1.48502 * 109.47168 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47257 * 299.99868 * 26 24 22 29 29 H 1.48501 * 109.47449 * 60.00426 * 26 24 22 30 30 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 31 31 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 32 32 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 33 33 H 0.97004 * 119.99820 * 335.14409 * 6 4 2 34 34 H 1.08995 * 110.39285 * 154.24632 * 13 11 9 35 35 H 1.08994 * 110.51394 * 31.90334 * 13 11 9 36 36 H 1.08998 * 110.37130 * 200.65693 * 15 14 13 37 37 H 1.08994 * 110.37515 * 78.31744 * 15 14 13 38 38 H 1.09001 * 109.46284 * 301.21051 * 18 4 2 39 39 H 1.09005 * 109.46110 * 181.25565 * 18 4 2 40 40 H 1.08996 * 109.49796 * 178.68040 * 19 18 4 41 41 H 1.09000 * 109.52406 * 58.60257 * 19 18 4 42 42 H 1.08998 * 109.58588 * 294.84653 * 20 19 18 43 43 H 1.08997 * 109.70252 * 174.49039 * 20 19 18 44 44 H 0.96997 * 120.00116 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0589 -1.3111 7 6 1.3202 -2.6843 -2.4986 8 8 1.7032 -2.1408 -3.5129 9 6 0.7062 -4.0588 -2.5661 10 1 0.9126 -4.7075 -1.7147 11 6 -0.6646 -4.1865 -3.2335 12 1 -1.1896 -3.2919 -3.5684 13 6 -1.4964 -5.4570 -2.9468 14 8 -1.0488 -6.4180 -3.9277 15 6 0.3829 -6.2446 -4.0045 16 6 0.5993 -4.7162 -3.9434 17 1 1.0435 -4.2299 -4.8119 18 6 3.5638 -0.8460 -1.1726 19 6 3.9524 -1.6685 0.0581 20 6 3.4644 -0.9518 1.3211 21 7 2.0225 -0.6995 1.1944 22 6 1.1536 -1.1135 2.1685 23 1 0.1387 -1.3770 1.9102 24 6 1.5774 -1.1945 3.4879 25 7 2.6899 -0.5973 3.8596 26 14 0.5688 -2.1509 4.7358 27 1 1.2312 -2.0842 6.0632 28 1 -0.7903 -1.5600 4.8311 29 1 0.4633 -3.5682 4.3053 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.1378 -2.4937 -0.4998 34 1 -2.5593 -5.2519 -3.0742 35 1 -1.2994 -5.8233 -1.9394 36 1 0.7637 -6.6445 -4.9443 37 1 0.8699 -6.7308 -3.1593 38 1 4.0058 0.1477 -1.0996 39 1 3.9314 -1.3415 -2.0713 40 1 5.0363 -1.7760 0.0965 41 1 3.4910 -2.6543 -0.0021 42 1 3.9928 -0.0049 1.4310 43 1 3.6506 -1.5776 2.1938 44 1 2.9862 -0.6542 4.7815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993683898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = -29.460721 kcal Electronic energy + Delta-G solvation = -24980.568807 eV Core-core repulsion = 21513.397944 eV Total energy + Delta-G solvation = -3467.170863 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.78732 -39.35173 -37.57764 -34.64948 -33.95680 -32.44637 -31.71808 -29.54024 -28.91718 -26.70382 -25.82834 -25.03907 -22.84259 -21.66859 -20.86538 -20.79501 -19.99125 -18.76469 -17.63411 -16.50304 -16.04174 -15.84979 -15.36734 -15.28773 -14.87210 -14.62979 -14.08229 -13.91084 -13.54176 -13.21806 -13.13176 -12.90371 -12.76595 -12.58498 -11.95567 -11.90825 -11.71505 -11.31834 -11.28542 -11.01660 -10.75647 -10.69561 -10.57508 -10.54380 -10.39377 -10.16479 -10.06574 -9.86337 -9.71932 -9.55728 -9.35747 -8.60071 -8.49717 -6.72418 -5.86322 -3.32007 2.55066 3.31185 3.32124 3.37557 3.38671 3.56577 3.81266 4.40117 4.43308 4.45453 4.70409 4.73251 4.95865 5.12427 5.17292 5.26213 5.28629 5.45568 5.49187 5.51130 5.54245 5.60555 5.70015 5.83608 5.91659 5.95497 6.07762 6.17736 6.28079 6.37062 6.47140 6.48223 6.62604 6.63054 6.73381 6.89233 6.92450 7.05341 7.32552 7.60925 7.72592 7.95586 8.37022 8.54823 9.12933 9.75867 10.33329 11.21766 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.004835 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.542975 B = 5790.090434 C = 6738.955361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.134 3.866 5 H 0.075 0.925 6 N -0.693 5.693 7 C 0.539 3.461 8 O -0.553 6.553 9 C -0.146 4.146 10 H 0.123 0.877 11 C -0.167 4.167 12 H 0.127 0.873 13 C 0.073 3.927 14 O -0.374 6.374 15 C 0.073 3.927 16 C -0.162 4.162 17 H 0.134 0.866 18 C -0.121 4.121 19 C -0.140 4.140 20 C 0.171 3.829 21 N -0.585 5.585 22 C -0.258 4.258 23 H 0.070 0.930 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.900 3.100 27 H -0.291 1.291 28 H -0.283 1.283 29 H -0.284 1.284 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.410 0.590 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.018 0.982 43 H 0.085 0.915 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 -7.010 -11.309 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.028 3.972 5 H 0.094 0.906 6 N -0.343 5.343 7 C 0.324 3.676 8 O -0.432 6.432 9 C -0.168 4.168 10 H 0.141 0.859 11 C -0.185 4.185 12 H 0.144 0.856 13 C -0.003 4.003 14 O -0.292 6.292 15 C -0.004 4.004 16 C -0.180 4.180 17 H 0.151 0.849 18 C -0.160 4.160 19 C -0.179 4.179 20 C 0.046 3.954 21 N -0.309 5.309 22 C -0.388 4.388 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.542 5.542 26 Si 0.730 3.270 27 H -0.217 1.217 28 H -0.209 1.209 29 H -0.210 1.210 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.246 0.754 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.104 0.896 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.520 -6.738 -11.933 14.149 hybrid contribution -0.298 -0.376 1.341 1.424 sum -3.817 -7.114 -10.592 13.319 Atomic orbital electron populations 1.21781 0.95606 1.01415 1.00488 1.20634 0.93399 0.93988 0.86807 0.94323 1.21493 0.92924 0.82970 0.99825 0.90647 1.45942 1.60771 1.18704 1.08866 1.19387 0.78697 0.85647 0.83877 1.90655 1.50732 1.66966 1.34887 1.22443 0.99469 0.96966 0.97872 0.85944 1.24128 0.88974 1.01169 1.04278 0.85550 1.22965 0.99052 0.85705 0.92588 1.89175 1.20786 1.58221 1.61063 1.22960 0.82143 0.92537 1.02762 1.24118 1.02117 0.95268 0.96537 0.84864 1.21771 0.95438 1.00495 0.98257 1.22138 0.98965 0.99499 0.97321 1.20790 0.83218 0.97179 0.94228 1.44131 1.03139 1.64839 1.18805 1.19088 0.95075 1.38411 0.86204 0.91288 1.25100 0.97763 0.99328 0.96983 1.70014 1.23882 1.43461 1.16891 0.86421 0.79660 0.80146 0.80784 1.21697 1.20897 1.21036 0.91723 0.94260 0.92780 0.75352 0.88152 0.91461 0.88202 0.91705 0.91883 0.93143 0.93441 0.92888 0.96383 0.89636 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.72 37.16 0.29 -2.09 16 2 C 0.16 3.06 3.18 -67.83 -0.22 2.84 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.13 2.33 2.32 -68.03 -0.16 2.17 16 5 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 6 N -0.69 -11.17 3.45 -53.91 -0.19 -11.35 16 7 C 0.54 8.47 7.58 -10.98 -0.08 8.39 16 8 O -0.55 -10.33 16.01 5.56 0.09 -10.24 16 9 C -0.15 -1.82 5.74 -91.78 -0.53 -2.34 16 10 H 0.12 1.36 8.14 -51.92 -0.42 0.94 16 11 C -0.17 -1.86 6.91 -89.11 -0.62 -2.48 16 12 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 13 C 0.07 0.73 7.45 37.97 0.28 1.01 16 14 O -0.37 -4.32 11.65 -35.23 -0.41 -4.73 16 15 C 0.07 0.72 7.44 37.94 0.28 1.00 16 16 C -0.16 -1.86 6.64 -89.15 -0.59 -2.45 16 17 H 0.13 1.65 7.82 -51.93 -0.41 1.25 16 18 C -0.12 -2.11 5.58 -26.69 -0.15 -2.26 16 19 C -0.14 -2.59 5.93 -26.61 -0.16 -2.75 16 20 C 0.17 3.82 5.29 -3.71 -0.02 3.80 16 21 N -0.59 -13.10 2.65 -165.03 -0.44 -13.54 16 22 C -0.26 -6.32 8.57 -15.06 -0.13 -6.45 16 23 H 0.07 1.63 6.23 -52.49 -0.33 1.30 16 24 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 25 N -0.90 -24.69 11.23 55.49 0.62 -24.07 16 26 Si 0.90 20.41 29.58 -169.99 -5.03 15.38 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.06 1.23 7.62 -51.93 -0.40 0.83 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.93 6.37 -51.93 -0.33 0.60 16 33 H 0.41 6.74 7.75 -40.82 -0.32 6.42 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.99 7.53 -51.93 -0.39 0.60 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.15 6.14 -51.93 -0.32 1.83 16 44 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -28.56 344.20 -9.13 -37.69 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.09 Total: 7.16 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.88 Total: -1.49 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.00 Total: -48.96 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.32 Total: -14.97 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.56 -9.13 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993683898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.228 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds