Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 6 6 N 1.46498 * 109.38487 * 305.62932 * 4 2 1 7 7 C 1.34778 * 120.00257 * 155.14378 * 6 4 2 8 8 O 1.21277 * 119.99873 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00387 * 180.02562 * 7 6 4 10 10 H 1.09007 * 115.50809 * 325.58496 * 9 7 6 11 11 C 1.53001 * 117.43421 * 110.95058 * 9 7 6 12 12 H 1.09003 * 119.80405 * 355.36733 * 11 9 7 13 13 C 1.54540 * 118.02992 * 198.17287 * 11 9 7 14 14 O 1.44425 * 104.72390 * 273.04408 * 13 11 9 15 15 C 1.44420 * 105.27861 * 40.53145 * 14 13 11 16 16 C 1.52991 * 117.43505 * 180.21138 * 9 7 6 17 17 H 1.08998 * 119.80683 * 5.65070 * 16 9 7 18 18 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 19 19 C 1.53043 * 109.54140 * 61.23858 * 18 4 2 20 20 C 1.53193 * 109.30963 * 298.63474 * 19 18 4 21 21 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 22 22 C 1.36942 * 120.62997 * 353.41990 * 21 2 1 23 23 H 1.07996 * 119.99319 * 29.57864 * 22 21 2 24 24 C 1.38810 * 120.00133 * 209.57896 * 22 21 2 25 25 N 1.31624 * 120.00100 * 15.53431 * 24 22 21 26 26 Si 1.86793 * 119.99873 * 195.53048 * 24 22 21 27 27 H 1.48502 * 109.47168 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47257 * 299.99868 * 26 24 22 29 29 H 1.48501 * 109.47449 * 60.00426 * 26 24 22 30 30 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 31 31 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 32 32 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 33 33 H 0.97004 * 119.99820 * 335.14409 * 6 4 2 34 34 H 1.08995 * 110.39285 * 154.24632 * 13 11 9 35 35 H 1.08994 * 110.51394 * 31.90334 * 13 11 9 36 36 H 1.08998 * 110.37130 * 200.65693 * 15 14 13 37 37 H 1.08994 * 110.37515 * 78.31744 * 15 14 13 38 38 H 1.09001 * 109.46284 * 301.21051 * 18 4 2 39 39 H 1.09005 * 109.46110 * 181.25565 * 18 4 2 40 40 H 1.08996 * 109.49796 * 178.68040 * 19 18 4 41 41 H 1.09000 * 109.52406 * 58.60257 * 19 18 4 42 42 H 1.08998 * 109.58588 * 294.84653 * 20 19 18 43 43 H 1.08997 * 109.70252 * 174.49039 * 20 19 18 44 44 H 0.96997 * 120.00116 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0589 -1.3111 7 6 1.3202 -2.6843 -2.4986 8 8 1.7032 -2.1408 -3.5129 9 6 0.7062 -4.0588 -2.5661 10 1 0.9126 -4.7075 -1.7147 11 6 -0.6646 -4.1865 -3.2335 12 1 -1.1896 -3.2919 -3.5684 13 6 -1.4964 -5.4570 -2.9468 14 8 -1.0488 -6.4180 -3.9277 15 6 0.3829 -6.2446 -4.0045 16 6 0.5993 -4.7162 -3.9434 17 1 1.0435 -4.2299 -4.8119 18 6 3.5638 -0.8460 -1.1726 19 6 3.9524 -1.6685 0.0581 20 6 3.4644 -0.9518 1.3211 21 7 2.0225 -0.6995 1.1944 22 6 1.1536 -1.1135 2.1685 23 1 0.1387 -1.3770 1.9102 24 6 1.5774 -1.1945 3.4879 25 7 2.6899 -0.5973 3.8596 26 14 0.5688 -2.1509 4.7358 27 1 1.2312 -2.0842 6.0632 28 1 -0.7903 -1.5600 4.8311 29 1 0.4633 -3.5682 4.3053 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.1378 -2.4937 -0.4998 34 1 -2.5593 -5.2519 -3.0742 35 1 -1.2994 -5.8233 -1.9394 36 1 0.7637 -6.6445 -4.9443 37 1 0.8699 -6.7308 -3.1593 38 1 4.0058 0.1477 -1.0996 39 1 3.9314 -1.3415 -2.0713 40 1 5.0363 -1.7760 0.0965 41 1 3.4910 -2.6543 -0.0021 42 1 3.9928 -0.0049 1.4310 43 1 3.6506 -1.5776 2.1938 44 1 2.9862 -0.6542 4.7815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993683898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = -46.153656 kcal Electronic energy + Delta-G solvation = -24981.292667 eV Core-core repulsion = 21513.397944 eV Total energy + Delta-G solvation = -3467.894723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.79834 -40.61113 -39.01202 -35.72347 -35.45034 -34.01422 -33.37488 -31.19546 -29.68022 -28.11241 -27.07554 -26.71060 -24.11881 -23.06709 -22.37609 -21.69170 -21.18367 -20.29853 -18.72858 -18.26032 -17.23243 -16.88617 -16.79025 -16.38463 -16.07358 -15.92508 -15.68552 -15.33491 -14.99459 -14.71308 -14.57612 -14.24046 -13.95871 -13.60059 -13.51975 -12.97755 -12.87198 -12.81984 -12.69251 -12.54438 -12.44923 -12.34774 -12.18483 -11.93937 -11.68027 -11.44008 -11.37799 -11.30205 -11.03921 -10.83178 -10.65125 -10.47594 -9.92915 -8.59981 -7.80630 -5.27425 1.40972 1.52066 1.53441 1.58972 2.15670 2.54235 2.56702 3.04778 3.35894 3.46366 3.55548 3.59628 3.79254 3.88293 3.98991 4.05935 4.11852 4.17584 4.20783 4.38816 4.41211 4.57180 4.66110 4.67429 4.76021 4.78690 4.81573 4.94379 4.98350 4.99203 5.03660 5.07035 5.12832 5.22470 5.34220 5.46401 5.55147 5.63572 5.71453 5.75461 5.80310 6.45339 6.66155 7.20441 7.27890 7.90476 8.44175 9.26082 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015802 B = 0.004835 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.542975 B = 5790.090434 C = 6738.955361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.029 0.971 4 C 0.144 3.856 5 H 0.078 0.922 6 N -0.691 5.691 7 C 0.540 3.460 8 O -0.584 6.584 9 C -0.151 4.151 10 H 0.139 0.861 11 C -0.160 4.160 12 H 0.123 0.877 13 C 0.074 3.926 14 O -0.390 6.390 15 C 0.075 3.925 16 C -0.163 4.163 17 H 0.121 0.879 18 C -0.115 4.115 19 C -0.125 4.125 20 C 0.179 3.821 21 N -0.595 5.595 22 C -0.248 4.248 23 H 0.081 0.919 24 C -0.048 4.048 25 N -0.936 5.936 26 Si 0.959 3.041 27 H -0.304 1.304 28 H -0.278 1.278 29 H -0.275 1.275 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.410 0.590 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.054 0.946 42 H -0.007 1.007 43 H 0.055 0.945 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 -8.500 -12.456 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.046 0.954 4 C 0.037 3.963 5 H 0.096 0.904 6 N -0.340 5.340 7 C 0.327 3.673 8 O -0.465 6.465 9 C -0.172 4.172 10 H 0.156 0.844 11 C -0.179 4.179 12 H 0.141 0.859 13 C -0.002 4.002 14 O -0.309 6.309 15 C -0.002 4.002 16 C -0.182 4.182 17 H 0.139 0.861 18 C -0.154 4.154 19 C -0.164 4.164 20 C 0.054 3.946 21 N -0.319 5.319 22 C -0.378 4.378 23 H 0.098 0.902 24 C -0.243 4.243 25 N -0.582 5.582 26 Si 0.788 3.212 27 H -0.231 1.231 28 H -0.204 1.204 29 H -0.201 1.201 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.247 0.753 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.011 0.989 43 H 0.073 0.927 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.845 -8.241 -13.106 16.222 hybrid contribution 0.107 0.152 1.622 1.633 sum -4.738 -8.089 -11.484 14.825 Atomic orbital electron populations 1.21694 0.94115 1.01849 1.00781 1.20751 0.94635 0.93395 0.86247 0.95364 1.21250 0.92830 0.83650 0.98568 0.90399 1.45890 1.60744 1.18189 1.09177 1.19856 0.77906 0.86531 0.82963 1.90643 1.52047 1.68049 1.35770 1.22374 1.00493 0.95207 0.99117 0.84352 1.24199 0.88729 1.01692 1.03299 0.85862 1.23093 0.99639 0.84597 0.92851 1.89165 1.21575 1.58569 1.61607 1.23068 0.81633 0.91264 1.04191 1.24142 1.02122 0.96462 0.95434 0.86089 1.21719 0.95570 1.00484 0.97629 1.21945 0.99740 0.99052 0.95704 1.20569 0.83399 0.95728 0.94954 1.44306 1.02947 1.65342 1.19317 1.19444 0.95536 1.36450 0.86403 0.90175 1.25776 0.98899 1.00818 0.98827 1.70177 1.25808 1.45661 1.16565 0.85476 0.78255 0.79345 0.78129 1.23120 1.20389 1.20083 0.93450 0.91908 0.92234 0.75328 0.86597 0.90339 0.86734 0.90477 0.91608 0.92665 0.92048 0.92711 0.98874 0.92670 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.72 71.98 0.56 -3.69 16 2 C 0.16 5.87 3.18 44.83 0.14 6.01 16 3 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 4 C 0.14 4.78 2.32 44.93 0.10 4.88 16 5 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 6 N -0.69 -21.00 3.45 -442.86 -1.53 -22.53 16 7 C 0.54 16.02 7.58 87.66 0.66 16.68 16 8 O -0.58 -21.00 16.01 -3.02 -0.05 -21.05 16 9 C -0.15 -3.41 5.74 -11.54 -0.07 -3.47 16 10 H 0.14 2.68 8.14 -2.38 -0.02 2.66 16 11 C -0.16 -3.21 6.91 -9.82 -0.07 -3.28 16 12 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 13 C 0.07 1.25 7.45 72.51 0.54 1.79 16 14 O -0.39 -7.96 11.65 -148.98 -1.74 -9.69 16 15 C 0.07 1.28 7.44 72.49 0.54 1.82 16 16 C -0.16 -3.41 6.64 -9.84 -0.07 -3.48 16 17 H 0.12 2.86 7.82 -2.39 -0.02 2.84 16 18 C -0.12 -3.87 5.58 30.62 0.17 -3.70 16 19 C -0.13 -4.53 5.93 30.67 0.18 -4.34 16 20 C 0.18 8.10 5.29 86.36 0.46 8.55 16 21 N -0.60 -26.53 2.65 -676.05 -1.79 -28.32 16 22 C -0.25 -12.02 8.57 84.03 0.72 -11.30 16 23 H 0.08 3.66 6.23 -2.91 -0.02 3.64 16 24 C -0.05 -2.47 4.94 84.86 0.42 -2.05 16 25 N -0.94 -52.72 11.23 21.65 0.24 -52.47 16 26 Si 0.96 42.00 29.58 68.60 2.03 44.03 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 30 H 0.05 1.74 7.62 -2.39 -0.02 1.72 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.91 6.37 -2.39 -0.02 1.90 16 33 H 0.41 12.66 7.75 -92.70 -0.72 11.94 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.96 7.53 -2.39 -0.02 1.94 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.05 2.84 6.14 -2.39 -0.01 2.83 16 44 H 0.25 13.70 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -61.01 344.20 1.74 -59.27 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.28 Total: 26.34 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 4.29 Total: 4.43 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.08 Total: -103.33 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.78 Total: -30.74 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -61.01 1.74 -59.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993683898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.114 kcal (2) G-P(sol) polarization free energy of solvation -61.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds