Wall clock time and date at job start Tue Mar 31 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.32835 * 2 1 4 4 C 1.54478 * 110.46883 * 237.69069 * 2 1 3 5 5 C 1.54511 * 104.06273 * 217.14220 * 4 2 1 6 6 H 1.08995 * 110.51167 * 118.63666 * 5 4 2 7 7 C 1.50695 * 110.50893 * 241.21810 * 5 4 2 8 8 O 1.21271 * 120.00253 * 359.97438 * 7 5 4 9 9 N 1.34781 * 119.99562 * 180.02562 * 7 5 4 10 10 C 1.46502 * 119.99556 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.29452 * 117.69668 * 94.73958 * 11 10 9 13 13 C 1.50316 * 123.65782 * 180.58824 * 12 11 10 14 14 N 1.47008 * 109.19981 * 349.49882 * 13 12 11 15 15 C 1.36936 * 121.37348 * 222.75888 * 14 13 12 16 16 H 1.07997 * 119.99718 * 155.95941 * 15 14 13 17 17 C 1.38810 * 120.00203 * 335.95958 * 15 14 13 18 18 N 1.31619 * 120.00015 * 344.52854 * 17 15 14 19 19 Si 1.86799 * 119.99981 * 164.52213 * 17 15 14 20 20 H 1.48500 * 109.47294 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47374 * 120.00310 * 19 17 15 22 22 H 1.48508 * 109.47302 * 240.00285 * 19 17 15 23 23 C 1.47335 * 117.25019 * 42.73910 * 14 13 12 24 24 C 1.49971 * 117.69537 * 274.99801 * 11 10 9 25 25 C 1.54485 * 104.06093 * 359.97438 * 5 4 2 26 26 O 1.44423 * 104.80465 * 23.98077 * 25 5 4 27 27 H 1.08998 * 109.47871 * 299.20118 * 1 2 3 28 28 H 1.09003 * 109.47308 * 59.20598 * 1 2 3 29 29 H 1.08999 * 109.46877 * 179.20068 * 1 2 3 30 30 H 1.09002 * 110.51009 * 335.78161 * 4 2 1 31 31 H 1.08997 * 110.51553 * 98.49145 * 4 2 1 32 32 H 0.96998 * 120.00268 * 359.97438 * 9 7 5 33 33 H 1.08998 * 109.47546 * 299.99381 * 10 9 7 34 34 H 1.09004 * 109.47329 * 59.99614 * 10 9 7 35 35 H 1.07997 * 118.17244 * 0.85405 * 12 11 10 36 36 H 1.09000 * 109.67670 * 229.47729 * 13 12 11 37 37 H 1.08998 * 109.33493 * 109.31237 * 13 12 11 38 38 H 0.97003 * 119.99875 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.78159 * 178.61457 * 23 14 13 40 40 H 1.09000 * 109.77831 * 57.81207 * 23 14 13 41 41 H 1.09004 * 109.31689 * 281.29118 * 24 11 10 42 42 H 1.09011 * 109.31285 * 40.90482 * 24 11 10 43 43 H 1.09000 * 110.37152 * 265.14759 * 25 5 4 44 44 H 1.08998 * 110.36810 * 142.81029 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0702 -0.7735 -1.2232 5 6 3.3208 -1.5031 -0.6836 6 1 3.2003 -2.5829 -0.7706 7 6 4.5551 -1.0498 -1.4198 8 8 4.4659 -0.2201 -2.2997 9 7 5.7580 -1.5672 -1.1008 10 6 6.9579 -1.1269 -1.8168 11 6 8.1619 -1.8519 -1.2727 12 6 8.5447 -2.9263 -1.8849 13 6 9.7181 -3.7595 -1.4507 14 7 10.4726 -3.0318 -0.4199 15 6 11.8414 -2.9953 -0.4309 16 1 12.3639 -2.1850 0.0557 17 6 12.5575 -3.9998 -1.0674 18 7 11.9624 -5.1283 -1.3911 19 14 14.3655 -3.7498 -1.4648 20 1 14.7932 -2.4058 -1.0001 21 1 15.1719 -4.7903 -0.7776 22 1 14.5690 -3.8547 -2.9321 23 6 9.6952 -2.3431 0.6251 24 6 8.8286 -1.2810 -0.0567 25 6 3.3885 -1.0834 0.8016 26 8 2.0332 -0.7217 1.1450 27 1 -0.3635 0.5013 0.8970 28 1 -0.3634 0.5261 -0.8828 29 1 -0.3633 -1.0276 -0.0143 30 1 1.3314 -1.4928 -1.5769 31 1 2.3450 -0.0833 -2.0207 32 1 5.8293 -2.2311 -0.3972 33 1 6.8493 -1.3483 -2.8785 34 1 7.0887 -0.0533 -1.6810 35 1 7.9928 -3.2393 -2.7589 36 1 10.3653 -3.9556 -2.3055 37 1 9.3586 -4.7032 -1.0407 38 1 12.4628 -5.8300 -1.8363 39 1 10.3718 -1.8672 1.3348 40 1 9.0594 -3.0601 1.1447 41 1 9.4551 -0.4389 -0.3507 42 1 8.0674 -0.9368 0.6437 43 1 4.0524 -0.2276 0.9241 44 1 3.7260 -1.9177 1.4165 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000864900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:36 Heat of formation + Delta-G solvation = -51.669226 kcal Electronic energy + Delta-G solvation = -23624.993326 eV Core-core repulsion = 20156.859430 eV Total energy + Delta-G solvation = -3468.133896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61130 -38.85725 -37.74378 -35.04382 -33.08372 -32.57225 -31.99367 -30.82465 -29.77045 -27.18723 -26.17666 -24.49317 -23.14196 -22.70613 -21.59001 -21.10891 -20.13754 -18.02622 -17.60359 -16.45251 -16.14038 -15.82663 -15.70300 -15.40286 -15.18896 -14.78842 -14.21427 -13.91004 -13.66766 -13.46942 -13.40956 -13.06884 -12.75943 -12.46187 -12.31515 -12.27661 -12.10726 -11.66907 -11.60432 -11.42949 -11.17133 -11.07002 -10.95502 -10.78813 -10.45589 -10.33046 -10.09436 -9.96429 -9.87720 -9.64543 -9.07032 -8.73716 -8.12300 -6.80107 -5.84778 -3.23726 2.49555 2.51004 3.34014 3.35011 3.42656 3.44592 3.64878 4.13049 4.40594 4.45275 4.59168 4.69175 4.87977 4.93346 5.05121 5.13006 5.28673 5.29286 5.34506 5.35982 5.42739 5.52749 5.58287 5.70984 5.75166 5.76564 5.82866 5.87861 6.01164 6.10115 6.27498 6.37421 6.46410 6.50838 6.67593 6.80848 7.10417 7.19336 7.25841 7.47850 7.67829 7.77068 8.12341 8.32861 9.14420 9.77050 10.34693 11.25749 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042825 B = 0.002672 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.659788 B =10478.264783 C =10649.700504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.141 4.141 5 C -0.147 4.147 6 H 0.110 0.890 7 C 0.518 3.482 8 O -0.542 6.542 9 N -0.717 5.717 10 C 0.156 3.844 11 C -0.167 4.167 12 C -0.123 4.123 13 C 0.193 3.807 14 N -0.595 5.595 15 C -0.246 4.246 16 H 0.069 0.931 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.144 3.856 24 C -0.090 4.090 25 C 0.059 3.941 26 O -0.369 6.369 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.254 0.746 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.460 6.926 2.283 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.088 0.912 4 C -0.179 4.179 5 C -0.169 4.169 6 H 0.128 0.872 7 C 0.303 3.697 8 O -0.420 6.420 9 N -0.368 5.368 10 C 0.034 3.966 11 C -0.168 4.168 12 C -0.144 4.144 13 C 0.069 3.931 14 N -0.318 5.318 15 C -0.375 4.375 16 H 0.087 0.913 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.017 3.983 24 C -0.129 4.129 25 C -0.018 4.018 26 O -0.288 6.288 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.237 0.763 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.519 7.352 1.768 20.932 hybrid contribution 1.147 -0.338 -0.237 1.219 sum -18.372 7.014 1.530 19.725 Atomic orbital electron populations 1.21797 0.93004 1.02942 1.02549 1.23045 0.95424 0.95714 0.84717 0.91170 1.23023 0.95236 1.00283 0.99369 1.22719 0.94248 1.03133 0.96766 0.87210 1.20303 0.84521 0.81444 0.83419 1.90669 1.86130 1.33154 1.32029 1.46215 1.06670 1.44228 1.39680 1.20485 0.82084 0.98599 0.95439 1.20486 0.97568 0.98315 1.00439 1.23296 0.98581 0.95382 0.97123 1.19766 0.88875 0.91051 0.93451 1.44133 1.02125 1.60201 1.25387 1.19223 0.81013 1.04380 1.32884 0.91284 1.24996 0.98026 0.94740 1.02189 1.70014 1.35898 1.04526 1.45057 0.86177 0.84898 0.77547 0.77901 1.20288 1.21724 1.21562 1.20954 0.93458 0.92851 0.91025 1.20759 0.98059 0.99598 0.94497 1.23319 0.85291 1.00674 0.92565 1.89139 1.26524 1.74680 1.38464 0.91809 0.91010 0.91736 0.90110 0.88056 0.76323 0.91613 0.91551 0.88792 0.88808 0.94115 0.93622 0.92410 0.95922 0.91716 0.92885 0.91688 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.53 37.16 0.35 -0.68 16 2 C 0.07 0.62 3.91 -25.96 -0.10 0.52 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.14 -1.32 6.22 -25.16 -0.16 -1.47 16 5 C -0.15 -1.39 3.51 -90.20 -0.32 -1.71 16 6 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 7 C 0.52 6.46 7.02 -10.99 -0.08 6.38 16 8 O -0.54 -8.70 15.28 5.57 0.09 -8.61 16 9 N -0.72 -8.62 5.54 -61.47 -0.34 -8.96 16 10 C 0.16 2.23 5.66 -5.19 -0.03 2.20 16 11 C -0.17 -2.74 5.23 -100.99 -0.53 -3.26 16 12 C -0.12 -2.25 9.47 -35.78 -0.34 -2.59 16 13 C 0.19 4.44 5.23 -5.10 -0.03 4.41 16 14 N -0.60 -14.46 3.01 -173.69 -0.52 -14.99 16 15 C -0.25 -6.60 9.71 -15.06 -0.15 -6.75 16 16 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 17 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 18 N -0.91 -25.75 11.08 55.49 0.61 -25.14 16 19 Si 0.90 21.43 29.58 -169.99 -5.03 16.40 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.14 2.85 6.58 -3.54 -0.02 2.83 16 24 C -0.09 -1.50 5.94 -28.19 -0.17 -1.66 16 25 C 0.06 0.54 7.17 37.94 0.27 0.81 16 26 O -0.37 -3.93 11.34 -35.23 -0.40 -4.33 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.08 0.64 7.87 -51.93 -0.41 0.24 16 31 H 0.10 1.11 6.50 -51.93 -0.34 0.77 16 32 H 0.40 4.15 8.46 -40.82 -0.35 3.80 16 33 H 0.07 0.98 7.79 -51.93 -0.40 0.58 16 34 H 0.07 0.98 8.11 -51.93 -0.42 0.55 16 35 H 0.09 1.54 7.74 -52.49 -0.41 1.14 16 36 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.06 0.62 7.86 -51.93 -0.41 0.21 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -30.83 353.62 -8.89 -39.71 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.25 Total: 1.69 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.37 Total: -1.10 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.25 Total: -49.09 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.31 Total: -12.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.83 -8.89 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000864900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.957 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds