Wall clock time and date at job start Tue Mar 31 2020 06:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.32835 * 2 1 4 4 C 1.54478 * 110.46883 * 237.69069 * 2 1 3 5 5 C 1.54511 * 104.06273 * 217.14220 * 4 2 1 6 6 H 1.08995 * 110.51167 * 118.63666 * 5 4 2 7 7 C 1.50695 * 110.50893 * 241.21810 * 5 4 2 8 8 O 1.21271 * 120.00253 * 359.97438 * 7 5 4 9 9 N 1.34781 * 119.99562 * 180.02562 * 7 5 4 10 10 C 1.46502 * 119.99556 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.29452 * 117.69668 * 94.73958 * 11 10 9 13 13 C 1.50316 * 123.65782 * 180.58824 * 12 11 10 14 14 N 1.47008 * 109.19981 * 349.49882 * 13 12 11 15 15 C 1.36936 * 121.37348 * 222.75888 * 14 13 12 16 16 H 1.07997 * 119.99718 * 155.95941 * 15 14 13 17 17 C 1.38810 * 120.00203 * 335.95958 * 15 14 13 18 18 N 1.31619 * 120.00015 * 344.52854 * 17 15 14 19 19 Si 1.86799 * 119.99981 * 164.52213 * 17 15 14 20 20 H 1.48500 * 109.47294 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47374 * 120.00310 * 19 17 15 22 22 H 1.48508 * 109.47302 * 240.00285 * 19 17 15 23 23 C 1.47335 * 117.25019 * 42.73910 * 14 13 12 24 24 C 1.49971 * 117.69537 * 274.99801 * 11 10 9 25 25 C 1.54485 * 104.06093 * 359.97438 * 5 4 2 26 26 O 1.44423 * 104.80465 * 23.98077 * 25 5 4 27 27 H 1.08998 * 109.47871 * 299.20118 * 1 2 3 28 28 H 1.09003 * 109.47308 * 59.20598 * 1 2 3 29 29 H 1.08999 * 109.46877 * 179.20068 * 1 2 3 30 30 H 1.09002 * 110.51009 * 335.78161 * 4 2 1 31 31 H 1.08997 * 110.51553 * 98.49145 * 4 2 1 32 32 H 0.96998 * 120.00268 * 359.97438 * 9 7 5 33 33 H 1.08998 * 109.47546 * 299.99381 * 10 9 7 34 34 H 1.09004 * 109.47329 * 59.99614 * 10 9 7 35 35 H 1.07997 * 118.17244 * 0.85405 * 12 11 10 36 36 H 1.09000 * 109.67670 * 229.47729 * 13 12 11 37 37 H 1.08998 * 109.33493 * 109.31237 * 13 12 11 38 38 H 0.97003 * 119.99875 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.78159 * 178.61457 * 23 14 13 40 40 H 1.09000 * 109.77831 * 57.81207 * 23 14 13 41 41 H 1.09004 * 109.31689 * 281.29118 * 24 11 10 42 42 H 1.09011 * 109.31285 * 40.90482 * 24 11 10 43 43 H 1.09000 * 110.37152 * 265.14759 * 25 5 4 44 44 H 1.08998 * 110.36810 * 142.81029 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0702 -0.7735 -1.2232 5 6 3.3208 -1.5031 -0.6836 6 1 3.2003 -2.5829 -0.7706 7 6 4.5551 -1.0498 -1.4198 8 8 4.4659 -0.2201 -2.2997 9 7 5.7580 -1.5672 -1.1008 10 6 6.9579 -1.1269 -1.8168 11 6 8.1619 -1.8519 -1.2727 12 6 8.5447 -2.9263 -1.8849 13 6 9.7181 -3.7595 -1.4507 14 7 10.4726 -3.0318 -0.4199 15 6 11.8414 -2.9953 -0.4309 16 1 12.3639 -2.1850 0.0557 17 6 12.5575 -3.9998 -1.0674 18 7 11.9624 -5.1283 -1.3911 19 14 14.3655 -3.7498 -1.4648 20 1 14.7932 -2.4058 -1.0001 21 1 15.1719 -4.7903 -0.7776 22 1 14.5690 -3.8547 -2.9321 23 6 9.6952 -2.3431 0.6251 24 6 8.8286 -1.2810 -0.0567 25 6 3.3885 -1.0834 0.8016 26 8 2.0332 -0.7217 1.1450 27 1 -0.3635 0.5013 0.8970 28 1 -0.3634 0.5261 -0.8828 29 1 -0.3633 -1.0276 -0.0143 30 1 1.3314 -1.4928 -1.5769 31 1 2.3450 -0.0833 -2.0207 32 1 5.8293 -2.2311 -0.3972 33 1 6.8493 -1.3483 -2.8785 34 1 7.0887 -0.0533 -1.6810 35 1 7.9928 -3.2393 -2.7589 36 1 10.3653 -3.9556 -2.3055 37 1 9.3586 -4.7032 -1.0407 38 1 12.4628 -5.8300 -1.8363 39 1 10.3718 -1.8672 1.3348 40 1 9.0594 -3.0601 1.1447 41 1 9.4551 -0.4389 -0.3507 42 1 8.0674 -0.9368 0.6437 43 1 4.0524 -0.2276 0.9241 44 1 3.7260 -1.9177 1.4165 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000864900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:35 Heat of formation + Delta-G solvation = -71.656415 kcal Electronic energy + Delta-G solvation = -23625.860035 eV Core-core repulsion = 20156.859430 eV Total energy + Delta-G solvation = -3469.000605 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50489 -39.87723 -39.15308 -36.45108 -34.60477 -33.39213 -32.95373 -32.26831 -31.41519 -28.65196 -26.96481 -26.00883 -24.49907 -23.95046 -22.78929 -22.25538 -21.07193 -19.51301 -18.84287 -17.49320 -17.33770 -16.99688 -16.85836 -16.53582 -16.31393 -15.96047 -15.60279 -15.42809 -15.21218 -14.76899 -14.52724 -14.09673 -13.94504 -13.67375 -13.43161 -13.27170 -13.11644 -12.94791 -12.90392 -12.81274 -12.61891 -12.37771 -12.20565 -12.10278 -11.83117 -11.77593 -11.71364 -11.27901 -10.98778 -10.81991 -10.70100 -10.14746 -9.65909 -8.75627 -7.89430 -5.30429 1.16735 1.45716 1.48009 1.52591 1.57776 2.32628 2.50413 2.91531 3.27940 3.38864 3.61711 3.72517 3.78152 3.88516 3.95978 4.01013 4.19646 4.24021 4.43175 4.44960 4.53112 4.63985 4.67266 4.70599 4.75736 4.83611 4.84047 4.91747 4.94854 5.00852 5.09155 5.10536 5.21100 5.27793 5.34873 5.41048 5.48005 5.61222 5.76200 5.81543 6.15863 6.33377 6.50390 7.12986 7.15871 7.83076 8.36301 9.19222 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042825 B = 0.002672 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.659788 B =10478.264783 C =10649.700504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 H 0.064 0.936 4 C -0.140 4.140 5 C -0.140 4.140 6 H 0.132 0.868 7 C 0.520 3.480 8 O -0.579 6.579 9 N -0.709 5.709 10 C 0.166 3.834 11 C -0.139 4.139 12 C -0.142 4.142 13 C 0.204 3.796 14 N -0.616 5.616 15 C -0.255 4.255 16 H 0.070 0.930 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.138 3.862 24 C -0.084 4.084 25 C 0.059 3.941 26 O -0.384 6.384 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.414 0.586 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.015 0.985 38 H 0.250 0.750 39 H 0.058 0.942 40 H 0.029 0.971 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.862 7.908 2.998 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.007 3.993 3 H 0.082 0.918 4 C -0.178 4.178 5 C -0.162 4.162 6 H 0.150 0.850 7 C 0.307 3.693 8 O -0.460 6.460 9 N -0.360 5.360 10 C 0.043 3.957 11 C -0.139 4.139 12 C -0.162 4.162 13 C 0.079 3.921 14 N -0.340 5.340 15 C -0.385 4.385 16 H 0.088 0.912 17 C -0.250 4.250 18 N -0.586 5.586 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.013 3.987 24 C -0.123 4.123 25 C -0.019 4.019 26 O -0.303 6.303 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.250 0.750 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.940 8.344 2.518 22.682 hybrid contribution 1.540 -0.582 -0.392 1.692 sum -19.401 7.762 2.126 21.004 Atomic orbital electron populations 1.21804 0.91544 1.03404 1.03256 1.23141 0.96652 0.95234 0.84254 0.91838 1.23013 0.95592 1.00305 0.98903 1.22742 0.92521 1.04320 0.96585 0.85002 1.20761 0.85118 0.80556 0.82845 1.90664 1.86655 1.34845 1.33788 1.46050 1.05941 1.44350 1.39663 1.20238 0.81866 0.98243 0.95327 1.20594 0.97310 0.96791 0.99227 1.22945 0.97861 0.96425 0.98962 1.19405 0.89650 0.91153 0.91859 1.44421 1.01921 1.60641 1.27003 1.19538 0.82625 1.04073 1.32249 0.91218 1.25728 1.01801 0.94685 1.02751 1.70167 1.37136 1.05201 1.46099 0.85211 0.80459 0.77654 0.77168 1.19170 1.21927 1.21874 1.21150 0.93636 0.93427 0.90488 1.20700 0.98397 0.98182 0.95008 1.23419 0.84743 1.01253 0.92446 1.89133 1.27184 1.74844 1.39158 0.91728 0.89711 0.91386 0.88588 0.89818 0.74972 0.92049 0.91347 0.86982 0.92552 0.96779 0.94133 0.92307 0.95256 0.91941 0.89191 0.92261 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.53 71.98 0.69 -1.07 16 2 C 0.06 1.07 3.91 31.10 0.12 1.19 16 3 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 4 C -0.14 -2.35 6.22 31.61 0.20 -2.15 16 5 C -0.14 -2.30 3.51 -10.52 -0.04 -2.33 16 6 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 7 C 0.52 11.82 7.02 87.65 0.62 12.43 16 8 O -0.58 -17.80 15.28 -3.00 -0.05 -17.85 16 9 N -0.71 -15.05 5.54 -466.79 -2.59 -17.64 16 10 C 0.17 4.34 5.66 85.63 0.48 4.82 16 11 C -0.14 -4.24 5.23 -15.13 -0.08 -4.32 16 12 C -0.14 -5.07 9.47 27.11 0.26 -4.81 16 13 C 0.20 9.62 5.23 85.42 0.45 10.07 16 14 N -0.62 -30.12 3.01 -703.43 -2.12 -32.24 16 15 C -0.25 -13.81 9.71 84.03 0.82 -13.00 16 16 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 17 C -0.05 -3.04 5.01 84.86 0.43 -2.61 16 18 N -0.94 -54.80 11.08 21.65 0.24 -54.56 16 19 Si 0.97 44.66 29.58 68.60 2.03 46.69 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 C 0.14 5.30 6.58 86.25 0.57 5.87 16 24 C -0.08 -2.57 5.94 29.65 0.18 -2.40 16 25 C 0.06 0.91 7.17 72.49 0.52 1.43 16 26 O -0.38 -7.34 11.34 -148.98 -1.69 -9.03 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.10 1.30 7.87 -2.39 -0.02 1.28 16 31 H 0.08 1.74 6.50 -2.39 -0.02 1.73 16 32 H 0.41 7.11 8.46 -92.71 -0.78 6.33 16 33 H 0.06 1.71 7.79 -2.39 -0.02 1.69 16 34 H 0.07 1.82 8.11 -2.38 -0.02 1.80 16 35 H 0.11 3.58 7.74 -2.91 -0.02 3.56 16 36 H 0.06 3.04 6.41 -2.39 -0.02 3.02 16 37 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 39 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 43 H 0.06 0.99 7.86 -2.39 -0.02 0.97 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -67.54 353.62 1.23 -66.32 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.20 Total: 15.18 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.20 Total: 3.12 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -4.46 Total: -104.43 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.74 Total: -26.88 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.54 1.23 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000864900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.341 kcal (2) G-P(sol) polarization free energy of solvation -67.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds