Wall clock time and date at job start Tue Mar 31 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.27179 * 2 1 4 4 C 1.55204 * 110.45460 * 238.03556 * 2 1 3 5 5 C 1.55305 * 100.82538 * 204.75781 * 4 2 1 6 6 H 1.09009 * 110.84554 * 275.59500 * 5 4 2 7 7 C 1.50696 * 110.84653 * 152.18366 * 5 4 2 8 8 O 1.21282 * 120.00418 * 2.76669 * 7 5 4 9 9 N 1.34787 * 119.99760 * 182.77225 * 7 5 4 10 10 C 1.46497 * 119.99730 * 179.97438 * 9 7 5 11 11 C 1.50707 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.29446 * 117.69345 * 95.02291 * 11 10 9 13 13 C 1.49925 * 123.63389 * 180.66540 * 12 11 10 14 14 N 1.47015 * 109.37549 * 349.35127 * 13 12 11 15 15 C 1.36939 * 121.37036 * 222.86003 * 14 13 12 16 16 H 1.07999 * 119.99454 * 155.77823 * 15 14 13 17 17 C 1.38803 * 120.00347 * 335.77859 * 15 14 13 18 18 N 1.31625 * 120.00355 * 344.58956 * 17 15 14 19 19 Si 1.86796 * 120.00143 * 164.59043 * 17 15 14 20 20 H 1.48498 * 109.47426 * 266.00492 * 19 17 15 21 21 H 1.48507 * 109.47156 * 26.00448 * 19 17 15 22 22 H 1.48502 * 109.47483 * 146.00548 * 19 17 15 23 23 C 1.47335 * 117.25039 * 42.59560 * 14 13 12 24 24 C 1.49968 * 117.69389 * 275.00361 * 11 10 9 25 25 C 1.54375 * 102.43823 * 33.88647 * 5 4 2 26 26 O 1.43237 * 107.59011 * 338.74478 * 25 5 4 27 27 H 1.09000 * 109.47294 * 299.36641 * 1 2 3 28 28 H 1.09002 * 109.46784 * 59.37038 * 1 2 3 29 29 H 1.09004 * 109.47052 * 179.36428 * 1 2 3 30 30 H 1.08998 * 111.30496 * 86.82481 * 4 2 1 31 31 H 1.09004 * 111.05432 * 322.58468 * 4 2 1 32 32 H 0.96993 * 119.99753 * 359.97438 * 9 7 5 33 33 H 1.09002 * 109.47122 * 60.00053 * 10 9 7 34 34 H 1.08996 * 109.47768 * 300.00157 * 10 9 7 35 35 H 1.07998 * 118.17351 * 0.83513 * 12 11 10 36 36 H 1.08994 * 109.48026 * 229.34095 * 13 12 11 37 37 H 1.08997 * 109.34793 * 109.28103 * 13 12 11 38 38 H 0.96996 * 120.00245 * 179.97438 * 18 17 15 39 39 H 1.09008 * 109.77928 * 58.07774 * 23 14 13 40 40 H 1.08997 * 109.78036 * 178.83475 * 23 14 13 41 41 H 1.09005 * 109.31768 * 40.71247 * 24 11 10 42 42 H 1.09008 * 109.16282 * 281.19463 * 24 11 10 43 43 H 1.08999 * 109.83137 * 98.25702 * 25 5 4 44 44 H 1.09001 * 109.83531 * 219.22942 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0724 -0.7698 -1.2337 5 6 3.4722 -1.2002 -0.7167 6 1 4.2015 -0.4032 -0.8624 7 6 3.9262 -2.4690 -1.3912 8 8 3.2394 -2.9776 -2.2517 9 7 5.0956 -3.0388 -1.0379 10 6 5.5366 -4.2725 -1.6932 11 6 6.8646 -4.6979 -1.1214 12 6 6.8556 -5.5630 -0.1585 13 6 8.0958 -6.0672 0.5163 14 7 9.2762 -5.6326 -0.2446 15 6 10.3235 -6.4822 -0.4825 16 1 10.9734 -6.3144 -1.3286 17 6 10.5498 -7.5589 0.3637 18 7 9.9694 -7.6015 1.5443 19 14 11.6779 -8.9477 -0.1730 20 1 10.8709 -10.0305 -0.7905 21 1 12.6580 -8.4345 -1.1636 22 1 12.4018 -9.4821 1.0084 23 6 9.2832 -4.2471 -0.7458 24 6 8.1032 -4.0895 -1.7085 25 6 3.2125 -1.4393 0.7862 26 8 2.0286 -0.7156 1.1414 27 1 -0.3634 0.5040 0.8956 28 1 -0.3633 0.5236 -0.8843 29 1 -0.3633 -1.0276 -0.0114 30 1 2.1581 -0.1165 -2.1019 31 1 1.4522 -1.6379 -1.4573 32 1 5.6449 -2.6319 -0.3499 33 1 5.6417 -4.0977 -2.7639 34 1 4.7996 -5.0575 -1.5239 35 1 5.9020 -5.9445 0.1753 36 1 8.0698 -7.1561 0.5579 37 1 8.1458 -5.6642 1.5278 38 1 10.1273 -8.3541 2.1355 39 1 9.1746 -3.5529 0.0875 40 1 10.2176 -4.0496 -1.2710 41 1 7.9302 -3.0298 -1.8964 42 1 8.3360 -4.5890 -2.6490 43 1 3.0650 -2.5033 0.9712 44 1 4.0578 -1.0750 1.3701 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000864907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:42 Heat of formation + Delta-G solvation = -52.275913 kcal Electronic energy + Delta-G solvation = -23609.330340 eV Core-core repulsion = 20141.170136 eV Total energy + Delta-G solvation = -3468.160204 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57296 -38.89999 -37.75833 -35.03207 -33.09510 -32.62038 -32.02202 -30.83304 -29.78158 -27.20403 -26.24033 -24.50581 -23.10125 -22.69386 -21.50418 -21.12934 -20.21246 -17.82356 -17.58109 -17.10019 -16.16503 -15.85401 -15.49806 -15.25207 -14.93404 -14.72693 -14.13788 -13.96791 -13.76036 -13.65393 -13.45388 -13.02464 -12.76999 -12.67872 -12.30676 -12.20356 -12.05861 -11.63632 -11.59120 -11.42029 -11.32854 -11.18764 -10.94609 -10.79412 -10.46558 -10.33554 -10.06934 -9.87436 -9.75765 -9.64283 -9.06509 -8.73224 -8.11443 -6.79856 -5.84185 -3.23503 2.48561 2.50768 3.31570 3.35809 3.42846 3.43847 3.54616 3.99762 4.44728 4.45612 4.54478 4.70796 4.81543 4.88673 5.04560 5.12176 5.29077 5.32610 5.34368 5.34735 5.39759 5.53118 5.54835 5.64118 5.75951 5.79826 5.88109 5.91134 6.01148 6.10402 6.27401 6.37424 6.46867 6.67893 6.68546 6.80843 7.10754 7.19452 7.26448 7.47587 7.68016 7.77351 8.12056 8.33356 9.14823 9.77395 10.35037 11.26343 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037506 B = 0.002715 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.377656 B =10309.566159 C =10555.633499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.072 0.928 4 C -0.130 4.130 5 C -0.149 4.149 6 H 0.111 0.889 7 C 0.521 3.479 8 O -0.541 6.541 9 N -0.718 5.718 10 C 0.157 3.843 11 C -0.168 4.168 12 C -0.122 4.122 13 C 0.193 3.807 14 N -0.595 5.595 15 C -0.247 4.247 16 H 0.069 0.931 17 C -0.001 4.001 18 N -0.909 5.909 19 Si 0.905 3.095 20 H -0.288 1.288 21 H -0.279 1.279 22 H -0.291 1.291 23 C 0.144 3.856 24 C -0.090 4.090 25 C 0.065 3.935 26 O -0.377 6.377 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.254 0.746 39 H 0.023 0.977 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.311 14.989 -3.135 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.171 4.171 6 H 0.129 0.871 7 C 0.306 3.694 8 O -0.418 6.418 9 N -0.369 5.369 10 C 0.034 3.966 11 C -0.169 4.169 12 C -0.143 4.143 13 C 0.068 3.932 14 N -0.318 5.318 15 C -0.376 4.376 16 H 0.087 0.913 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.736 3.264 20 H -0.215 1.215 21 H -0.204 1.204 22 H -0.217 1.217 23 C 0.017 3.983 24 C -0.129 4.129 25 C -0.012 4.012 26 O -0.296 6.296 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.839 14.465 -3.442 21.007 hybrid contribution 0.977 -0.637 -0.107 1.172 sum -13.862 13.828 -3.550 19.899 Atomic orbital electron populations 1.21881 0.93459 1.03078 1.02428 1.23066 0.95190 0.95496 0.84569 0.90993 1.23266 0.93937 1.01548 0.98077 1.22933 1.00109 0.97294 0.96717 0.87075 1.20180 0.81110 0.85261 0.82845 1.90701 1.54623 1.64197 1.32311 1.46235 1.21676 1.27317 1.41642 1.20484 0.94042 0.85365 0.96696 1.20488 0.93701 1.02261 1.00440 1.23215 1.00794 0.95122 0.95168 1.19680 0.81185 1.00239 0.92081 1.44116 1.17048 1.07064 1.63598 1.19198 1.06263 1.05535 1.06607 0.91311 1.24995 0.99419 1.00594 0.94892 1.70009 1.47193 1.31064 1.07201 0.86218 0.80180 0.82494 0.77546 1.21489 1.20425 1.21750 1.20948 0.95318 0.87455 0.94536 1.20761 0.94304 0.98020 0.99823 1.23044 0.88568 0.97533 0.92096 1.88437 1.42254 1.64966 1.33965 0.91779 0.91103 0.91751 0.89427 0.88792 0.76335 0.91543 0.91603 0.88751 0.88868 0.94051 0.93573 0.95930 0.92416 0.92893 0.91737 0.90733 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.63 37.16 0.36 -0.75 16 2 C 0.07 0.63 4.07 -25.56 -0.10 0.53 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.18 5.71 -24.34 -0.14 -1.32 16 5 C -0.15 -1.39 3.38 -89.83 -0.30 -1.69 16 6 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 7 C 0.52 6.53 7.01 -10.98 -0.08 6.46 16 8 O -0.54 -8.80 15.72 5.56 0.09 -8.71 16 9 N -0.72 -8.68 5.53 -61.47 -0.34 -9.02 16 10 C 0.16 2.25 5.66 -5.19 -0.03 2.22 16 11 C -0.17 -2.76 5.22 -100.99 -0.53 -3.29 16 12 C -0.12 -2.24 9.45 -35.97 -0.34 -2.58 16 13 C 0.19 4.44 5.20 -5.29 -0.03 4.41 16 14 N -0.60 -14.48 3.01 -173.91 -0.52 -15.01 16 15 C -0.25 -6.64 9.71 -15.06 -0.15 -6.78 16 16 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 17 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 18 N -0.91 -25.80 11.09 55.49 0.62 -25.18 16 19 Si 0.91 21.48 29.58 -169.99 -5.03 16.45 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.14 2.86 6.58 -3.53 -0.02 2.84 16 24 C -0.09 -1.50 5.94 -28.19 -0.17 -1.67 16 25 C 0.06 0.62 7.38 37.88 0.28 0.89 16 26 O -0.38 -4.10 11.04 -35.23 -0.39 -4.49 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.02 7.33 -51.93 -0.38 0.64 16 32 H 0.40 4.18 8.46 -40.82 -0.35 3.83 16 33 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.07 0.99 7.78 -51.93 -0.40 0.59 16 35 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 36 H 0.09 2.41 6.43 -51.93 -0.33 2.08 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 43 H 0.07 0.77 7.81 -51.93 -0.41 0.37 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -31.04 354.62 -8.88 -39.92 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.31 Total: 1.55 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.33 Total: -0.84 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.25 Total: -49.21 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.30 Total: -13.20 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.04 -8.88 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000864907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.356 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds