Wall clock time and date at job start Tue Mar 31 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.27179 * 2 1 4 4 C 1.55204 * 110.45460 * 238.03556 * 2 1 3 5 5 C 1.55305 * 100.82538 * 204.75781 * 4 2 1 6 6 H 1.09009 * 110.84554 * 275.59500 * 5 4 2 7 7 C 1.50696 * 110.84653 * 152.18366 * 5 4 2 8 8 O 1.21282 * 120.00418 * 2.76669 * 7 5 4 9 9 N 1.34787 * 119.99760 * 182.77225 * 7 5 4 10 10 C 1.46497 * 119.99730 * 179.97438 * 9 7 5 11 11 C 1.50707 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.29446 * 117.69345 * 95.02291 * 11 10 9 13 13 C 1.49925 * 123.63389 * 180.66540 * 12 11 10 14 14 N 1.47015 * 109.37549 * 349.35127 * 13 12 11 15 15 C 1.36939 * 121.37036 * 222.86003 * 14 13 12 16 16 H 1.07999 * 119.99454 * 155.77823 * 15 14 13 17 17 C 1.38803 * 120.00347 * 335.77859 * 15 14 13 18 18 N 1.31625 * 120.00355 * 344.58956 * 17 15 14 19 19 Si 1.86796 * 120.00143 * 164.59043 * 17 15 14 20 20 H 1.48498 * 109.47426 * 266.00492 * 19 17 15 21 21 H 1.48507 * 109.47156 * 26.00448 * 19 17 15 22 22 H 1.48502 * 109.47483 * 146.00548 * 19 17 15 23 23 C 1.47335 * 117.25039 * 42.59560 * 14 13 12 24 24 C 1.49968 * 117.69389 * 275.00361 * 11 10 9 25 25 C 1.54375 * 102.43823 * 33.88647 * 5 4 2 26 26 O 1.43237 * 107.59011 * 338.74478 * 25 5 4 27 27 H 1.09000 * 109.47294 * 299.36641 * 1 2 3 28 28 H 1.09002 * 109.46784 * 59.37038 * 1 2 3 29 29 H 1.09004 * 109.47052 * 179.36428 * 1 2 3 30 30 H 1.08998 * 111.30496 * 86.82481 * 4 2 1 31 31 H 1.09004 * 111.05432 * 322.58468 * 4 2 1 32 32 H 0.96993 * 119.99753 * 359.97438 * 9 7 5 33 33 H 1.09002 * 109.47122 * 60.00053 * 10 9 7 34 34 H 1.08996 * 109.47768 * 300.00157 * 10 9 7 35 35 H 1.07998 * 118.17351 * 0.83513 * 12 11 10 36 36 H 1.08994 * 109.48026 * 229.34095 * 13 12 11 37 37 H 1.08997 * 109.34793 * 109.28103 * 13 12 11 38 38 H 0.96996 * 120.00245 * 179.97438 * 18 17 15 39 39 H 1.09008 * 109.77928 * 58.07774 * 23 14 13 40 40 H 1.08997 * 109.78036 * 178.83475 * 23 14 13 41 41 H 1.09005 * 109.31768 * 40.71247 * 24 11 10 42 42 H 1.09008 * 109.16282 * 281.19463 * 24 11 10 43 43 H 1.08999 * 109.83137 * 98.25702 * 25 5 4 44 44 H 1.09001 * 109.83531 * 219.22942 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0724 -0.7698 -1.2337 5 6 3.4722 -1.2002 -0.7167 6 1 4.2015 -0.4032 -0.8624 7 6 3.9262 -2.4690 -1.3912 8 8 3.2394 -2.9776 -2.2517 9 7 5.0956 -3.0388 -1.0379 10 6 5.5366 -4.2725 -1.6932 11 6 6.8646 -4.6979 -1.1214 12 6 6.8556 -5.5630 -0.1585 13 6 8.0958 -6.0672 0.5163 14 7 9.2762 -5.6326 -0.2446 15 6 10.3235 -6.4822 -0.4825 16 1 10.9734 -6.3144 -1.3286 17 6 10.5498 -7.5589 0.3637 18 7 9.9694 -7.6015 1.5443 19 14 11.6779 -8.9477 -0.1730 20 1 10.8709 -10.0305 -0.7905 21 1 12.6580 -8.4345 -1.1636 22 1 12.4018 -9.4821 1.0084 23 6 9.2832 -4.2471 -0.7458 24 6 8.1032 -4.0895 -1.7085 25 6 3.2125 -1.4393 0.7862 26 8 2.0286 -0.7156 1.1414 27 1 -0.3634 0.5040 0.8956 28 1 -0.3633 0.5236 -0.8843 29 1 -0.3633 -1.0276 -0.0114 30 1 2.1581 -0.1165 -2.1019 31 1 1.4522 -1.6379 -1.4573 32 1 5.6449 -2.6319 -0.3499 33 1 5.6417 -4.0977 -2.7639 34 1 4.7996 -5.0575 -1.5239 35 1 5.9020 -5.9445 0.1753 36 1 8.0698 -7.1561 0.5579 37 1 8.1458 -5.6642 1.5278 38 1 10.1273 -8.3541 2.1355 39 1 9.1746 -3.5529 0.0875 40 1 10.2176 -4.0496 -1.2710 41 1 7.9302 -3.0298 -1.8964 42 1 8.3360 -4.5890 -2.6490 43 1 3.0650 -2.5033 0.9712 44 1 4.0578 -1.0750 1.3701 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000864907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:41 Heat of formation + Delta-G solvation = -72.553211 kcal Electronic energy + Delta-G solvation = -23610.209630 eV Core-core repulsion = 20141.170136 eV Total energy + Delta-G solvation = -3469.039493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46470 -39.91000 -39.18423 -36.44729 -34.60875 -33.45065 -32.96335 -32.29593 -31.43021 -28.66532 -27.03685 -26.03274 -24.49198 -23.95637 -22.74561 -22.15622 -21.18030 -19.50359 -18.56323 -17.97292 -17.31145 -17.21501 -16.97939 -16.38858 -16.11746 -15.78121 -15.53460 -15.27655 -15.15028 -14.88004 -14.55886 -14.35252 -13.98502 -13.68361 -13.38296 -13.34865 -13.26963 -12.94346 -12.85739 -12.78829 -12.62532 -12.25914 -12.21916 -12.10206 -12.05986 -11.82706 -11.71369 -11.29554 -11.06610 -10.70066 -10.49251 -10.14945 -9.65913 -8.75823 -7.89272 -5.30641 1.15984 1.46424 1.48280 1.51163 1.56703 2.31461 2.50437 2.80853 3.26401 3.27952 3.61281 3.69789 3.83004 3.88162 3.95611 4.01554 4.15532 4.22680 4.42953 4.46123 4.53035 4.62964 4.66774 4.70061 4.75010 4.81541 4.83662 4.88531 4.91791 4.99570 5.10204 5.17104 5.21068 5.30213 5.33955 5.40377 5.47498 5.60969 5.76088 6.01188 6.15325 6.33282 6.49498 7.12859 7.15103 7.83011 8.36289 9.19324 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037506 B = 0.002715 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.377656 B =10309.566159 C =10555.633499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 H 0.093 0.907 4 C -0.130 4.130 5 C -0.140 4.140 6 H 0.143 0.857 7 C 0.522 3.478 8 O -0.580 6.580 9 N -0.709 5.709 10 C 0.166 3.834 11 C -0.138 4.138 12 C -0.142 4.142 13 C 0.205 3.795 14 N -0.616 5.616 15 C -0.256 4.256 16 H 0.071 0.929 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.967 3.033 20 H -0.289 1.289 21 H -0.267 1.267 22 H -0.295 1.295 23 C 0.138 3.862 24 C -0.084 4.084 25 C 0.064 3.936 26 O -0.399 6.399 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.414 0.586 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.055 0.945 37 H 0.015 0.985 38 H 0.249 0.751 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.609 17.168 -4.389 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 H 0.111 0.889 4 C -0.168 4.168 5 C -0.161 4.161 6 H 0.160 0.840 7 C 0.309 3.691 8 O -0.460 6.460 9 N -0.361 5.361 10 C 0.043 3.957 11 C -0.139 4.139 12 C -0.163 4.163 13 C 0.080 3.920 14 N -0.340 5.340 15 C -0.386 4.386 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.586 5.586 19 Si 0.796 3.204 20 H -0.216 1.216 21 H -0.192 1.192 22 H -0.222 1.222 23 C 0.013 3.987 24 C -0.122 4.122 25 C -0.013 4.013 26 O -0.319 6.319 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.250 0.750 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.132 16.686 -4.701 23.010 hybrid contribution 1.053 -1.231 0.248 1.639 sum -14.079 15.454 -4.452 21.375 Atomic orbital electron populations 1.21911 0.92958 1.02537 1.03475 1.23250 0.95738 0.96050 0.83464 0.88950 1.23260 0.93428 1.01055 0.99045 1.22952 1.00877 0.96192 0.96059 0.83957 1.20693 0.80397 0.85803 0.82174 1.90693 1.55645 1.65445 1.34226 1.46073 1.21899 1.26469 1.41640 1.20236 0.92406 0.86255 0.96791 1.20604 0.94825 1.00130 0.98356 1.22863 0.99284 0.97113 0.96994 1.19307 0.83082 0.98048 0.91594 1.44405 1.16919 1.08805 1.63848 1.19523 1.06632 1.06095 1.06319 0.91160 1.25734 1.01330 1.02822 0.95062 1.70165 1.48811 1.31445 1.08190 0.85248 0.78566 0.79603 0.77022 1.21590 1.19195 1.22188 1.21150 0.97021 0.85221 0.95294 1.20703 0.92673 1.00385 0.98486 1.23090 0.88922 0.96818 0.92478 1.88421 1.42851 1.65393 1.35224 0.91536 0.89243 0.93120 0.87761 0.91183 0.74980 0.91184 0.92251 0.87107 0.92666 0.96773 0.94141 0.95268 0.92231 0.89090 0.91907 0.92296 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.63 71.98 0.69 -1.29 16 2 C 0.07 1.06 4.07 31.35 0.13 1.18 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.13 -2.08 5.71 32.14 0.18 -1.90 16 5 C -0.14 -2.21 3.38 -10.28 -0.03 -2.24 16 6 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 7 C 0.52 11.95 7.01 87.65 0.61 12.56 16 8 O -0.58 -18.11 15.72 -3.04 -0.05 -18.16 16 9 N -0.71 -15.22 5.53 -466.77 -2.58 -17.80 16 10 C 0.17 4.38 5.66 85.64 0.48 4.87 16 11 C -0.14 -4.26 5.22 -15.13 -0.08 -4.34 16 12 C -0.14 -5.15 9.45 26.99 0.26 -4.89 16 13 C 0.20 9.70 5.20 85.29 0.44 10.14 16 14 N -0.62 -30.18 3.01 -704.11 -2.12 -32.31 16 15 C -0.26 -13.87 9.71 84.03 0.82 -13.06 16 16 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 17 C -0.05 -3.03 5.01 84.86 0.43 -2.61 16 18 N -0.94 -55.04 11.09 21.65 0.24 -54.80 16 19 Si 0.97 44.76 29.58 68.60 2.03 46.78 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 C 0.14 5.30 6.58 86.25 0.57 5.87 16 24 C -0.08 -2.56 5.94 29.65 0.18 -2.38 16 25 C 0.06 1.08 7.38 72.45 0.53 1.62 16 26 O -0.40 -8.00 11.04 -148.98 -1.65 -9.64 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.48 7.33 -2.38 -0.02 1.46 16 32 H 0.41 7.19 8.46 -92.71 -0.78 6.41 16 33 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 34 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 35 H 0.11 3.62 7.73 -2.91 -0.02 3.59 16 36 H 0.06 3.00 6.43 -2.39 -0.02 2.98 16 37 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 39 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 41 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.06 1.16 7.81 -2.39 -0.02 1.14 16 44 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -68.71 354.62 1.28 -67.43 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.20 Total: 14.97 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 5.21 Total: 3.53 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -4.46 Total: -104.91 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.69 Total: -27.80 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.71 1.28 -67.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000864907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.126 kcal (2) G-P(sol) polarization free energy of solvation -68.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds