Wall clock time and date at job start Tue Mar 31 2020 06:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.75414 * 2 1 4 4 C 1.54388 * 110.84769 * 236.53179 * 2 1 3 5 5 O 1.43239 * 107.58762 * 220.45172 * 4 2 1 6 6 C 1.43646 * 109.97118 * 358.28828 * 5 4 2 7 7 H 1.09000 * 110.30997 * 265.41064 * 6 5 4 8 8 C 1.50698 * 110.30842 * 143.34060 * 6 5 4 9 9 O 1.21277 * 120.00397 * 356.45693 * 8 6 5 10 10 N 1.34781 * 120.00090 * 176.45328 * 8 6 5 11 11 C 1.46496 * 120.00210 * 180.02562 * 10 8 6 12 12 C 1.50702 * 109.47260 * 180.02562 * 11 10 8 13 13 C 1.29445 * 117.69841 * 94.99715 * 12 11 10 14 14 C 1.50323 * 123.65687 * 180.85724 * 13 12 11 15 15 N 1.47008 * 109.15831 * 349.02541 * 14 13 12 16 16 C 1.36945 * 121.36909 * 222.92000 * 15 14 13 17 17 H 1.08003 * 119.99493 * 155.36687 * 16 15 14 18 18 C 1.38804 * 120.00080 * 335.36605 * 16 15 14 19 19 N 1.31625 * 119.99974 * 159.82625 * 18 16 15 20 20 Si 1.86795 * 120.00304 * 339.81924 * 18 16 15 21 21 H 1.48501 * 109.46889 * 88.39150 * 20 18 16 22 22 H 1.48500 * 109.47553 * 208.39164 * 20 18 16 23 23 H 1.48502 * 109.47384 * 328.39096 * 20 18 16 24 24 C 1.47338 * 117.25592 * 42.94648 * 15 14 13 25 25 C 1.49969 * 117.68824 * 274.73549 * 12 11 10 26 26 C 1.54946 * 105.13793 * 24.42722 * 6 5 4 27 27 H 1.08995 * 109.46799 * 182.01357 * 1 2 3 28 28 H 1.09003 * 109.46799 * 62.01276 * 1 2 3 29 29 H 1.08999 * 109.47135 * 302.01598 * 1 2 3 30 30 H 1.08999 * 109.83095 * 339.96712 * 4 2 1 31 31 H 1.08998 * 109.83043 * 100.93889 * 4 2 1 32 32 H 0.96999 * 119.99467 * 359.97438 * 10 8 6 33 33 H 1.09002 * 109.47103 * 300.00215 * 11 10 8 34 34 H 1.08998 * 109.47550 * 59.99535 * 11 10 8 35 35 H 1.08010 * 118.17300 * 0.88306 * 13 12 11 36 36 H 1.09003 * 109.52323 * 108.92712 * 14 13 12 37 37 H 1.08997 * 109.52775 * 229.05866 * 14 13 12 38 38 H 0.96995 * 120.00295 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.77783 * 57.80664 * 24 15 14 40 40 H 1.09001 * 109.78019 * 178.61409 * 24 15 14 41 41 H 1.08995 * 109.31837 * 281.28509 * 25 12 11 42 42 H 1.09001 * 109.31731 * 40.71814 * 25 12 11 43 43 H 1.08995 * 111.12650 * 205.63620 * 26 6 5 44 44 H 1.09008 * 111.12619 * 81.47330 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0795 -0.7957 -1.2036 5 8 3.2045 -1.5538 -0.7440 6 6 3.4465 -1.2796 0.6452 7 1 4.1949 -0.4942 0.7510 8 6 3.8981 -2.5303 1.3542 9 8 3.9461 -3.5835 0.7549 10 7 4.2488 -2.4784 2.6546 11 6 4.6884 -3.6941 3.3438 12 6 5.0193 -3.3672 4.7772 13 6 4.0959 -3.5528 5.6653 14 6 4.2744 -3.2540 7.1276 15 7 5.6953 -2.9892 7.3961 16 6 6.3215 -3.5086 8.4977 17 1 7.3916 -3.6543 8.4919 18 6 5.5809 -3.8477 9.6216 19 7 6.0741 -4.6890 10.5056 20 14 3.8843 -3.1099 9.8798 21 1 2.8670 -3.9637 9.2155 22 1 3.5935 -3.0341 11.3341 23 1 3.8435 -1.7455 9.2951 24 6 6.4176 -2.1416 6.4314 25 6 6.3971 -2.8555 5.0751 26 6 2.0828 -0.8053 1.2075 27 1 -0.3633 -1.0270 0.0361 28 1 -0.3633 0.4823 -0.9075 29 1 -0.3633 0.5448 0.8713 30 1 1.3108 -1.4683 -1.5841 31 1 2.3929 -0.1083 -1.9892 32 1 4.2108 -1.6360 3.1338 33 1 3.8906 -4.4364 3.3156 34 1 5.5733 -4.0931 2.8481 35 1 3.1443 -3.9445 5.3373 36 1 3.6837 -2.3778 7.3952 37 1 3.9446 -4.1094 7.7172 38 1 5.5565 -4.9262 11.2908 39 1 5.9246 -1.1729 6.3501 40 1 7.4482 -2.0053 6.7595 41 1 7.0962 -3.6916 5.0932 42 1 6.6977 -2.1547 4.2962 43 1 2.2186 -0.1639 2.0782 44 1 1.4386 -1.6526 1.4426 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000972076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:41 Heat of formation + Delta-G solvation = -43.597150 kcal Electronic energy + Delta-G solvation = -23748.877739 eV Core-core repulsion = 20281.093874 eV Total energy + Delta-G solvation = -3467.783864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58475 -38.95558 -37.95000 -35.15756 -33.98419 -33.02444 -31.44838 -30.54980 -30.35531 -27.20685 -26.72354 -24.53858 -23.54129 -23.15697 -21.27305 -21.11354 -20.38790 -18.08477 -17.67873 -17.28721 -16.10950 -15.89408 -15.69501 -15.45314 -15.23278 -14.63238 -14.38831 -14.15145 -14.01453 -13.77016 -13.47983 -13.31989 -13.25538 -12.78576 -12.60316 -12.24662 -12.06382 -11.92513 -11.74233 -11.65351 -11.49756 -11.41904 -11.21948 -10.87939 -10.39253 -10.31672 -10.21101 -9.90940 -9.62914 -9.53606 -9.10989 -8.70153 -8.47947 -7.07197 -5.97848 -3.33495 2.25679 2.48196 3.03969 3.26800 3.42948 3.45498 3.68621 3.94032 4.26337 4.42498 4.48274 4.65238 4.67556 4.79758 4.83408 4.95200 5.02194 5.14801 5.16684 5.22414 5.33730 5.37976 5.42666 5.48073 5.59183 5.60603 5.77320 5.78818 5.82514 5.92705 6.07763 6.11514 6.30201 6.34346 6.42571 6.51310 6.55472 6.70080 6.96187 7.30128 7.42935 7.86267 8.12916 8.28579 8.86575 9.66863 10.04839 11.18346 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025900 B = 0.003149 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.815556 B = 8890.354602 C = 9497.426112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 H 0.089 0.911 4 C 0.052 3.948 5 O -0.354 6.354 6 C 0.065 3.935 7 H 0.097 0.903 8 C 0.510 3.490 9 O -0.524 6.524 10 N -0.719 5.719 11 C 0.156 3.844 12 C -0.147 4.147 13 C -0.127 4.127 14 C 0.143 3.857 15 N -0.607 5.607 16 C -0.256 4.256 17 H 0.088 0.912 18 C 0.021 3.979 19 N -0.909 5.909 20 Si 0.884 3.116 21 H -0.287 1.287 22 H -0.303 1.303 23 H -0.273 1.273 24 C 0.147 3.853 25 C -0.095 4.095 26 C -0.142 4.142 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.263 0.737 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.486 11.701 -20.012 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.108 0.892 4 C -0.025 4.025 5 O -0.272 6.272 6 C 0.004 3.996 7 H 0.115 0.885 8 C 0.294 3.706 9 O -0.399 6.399 10 N -0.372 5.372 11 C 0.034 3.966 12 C -0.147 4.147 13 C -0.147 4.147 14 C 0.018 3.982 15 N -0.331 5.331 16 C -0.384 4.384 17 H 0.106 0.894 18 C -0.178 4.178 19 N -0.552 5.552 20 Si 0.715 3.285 21 H -0.215 1.215 22 H -0.231 1.231 23 H -0.198 1.198 24 C 0.021 3.979 25 C -0.134 4.134 26 C -0.180 4.180 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.316 10.676 -20.413 24.849 hybrid contribution -1.171 0.825 0.599 1.553 sum -10.488 11.501 -19.814 25.196 Atomic orbital electron populations 1.21737 0.93338 1.02568 1.02390 1.22733 0.97427 1.00030 0.94265 0.89223 1.23323 0.88594 0.94322 0.96262 1.88536 1.49109 1.67326 1.22251 1.22823 0.98366 0.95021 0.83415 0.88524 1.20433 0.77780 0.90316 0.82058 1.90724 1.52184 1.31230 1.65805 1.46069 1.67914 1.12860 1.10394 1.20469 0.99812 0.86174 0.90145 1.20582 0.96930 1.04427 0.92805 1.22799 0.97715 0.97291 0.96916 1.20361 0.87168 0.99248 0.91422 1.44441 1.06164 1.56628 1.25857 1.18904 0.94082 1.35719 0.89703 0.89409 1.25227 0.97857 0.98666 0.96048 1.69828 1.38763 1.33248 1.13353 0.87007 0.85268 0.80352 0.75902 1.21461 1.23083 1.19848 1.21034 0.97041 0.91768 0.88068 1.20833 0.93476 1.00230 0.98831 1.23346 0.94923 1.00899 0.98844 0.92090 0.92043 0.91893 0.90906 0.90994 0.76460 0.91379 0.91092 0.88147 0.94357 0.89782 0.92702 0.95428 0.91425 0.90928 0.92266 0.88822 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.14 37.16 0.34 -0.41 16 2 C -0.13 -0.78 3.60 -88.67 -0.32 -1.10 16 3 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 4 C 0.05 0.42 7.40 37.89 0.28 0.70 16 5 O -0.35 -4.33 10.61 -54.56 -0.58 -4.91 16 6 C 0.06 0.65 3.86 -26.86 -0.10 0.55 16 7 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 8 C 0.51 6.73 7.17 -10.98 -0.08 6.65 16 9 O -0.52 -9.38 16.55 -13.76 -0.23 -9.60 16 10 N -0.72 -8.35 5.55 -61.47 -0.34 -8.69 16 11 C 0.16 2.15 5.66 -5.19 -0.03 2.12 16 12 C -0.15 -2.25 5.22 -100.99 -0.53 -2.78 16 13 C -0.13 -2.14 9.47 -35.78 -0.34 -2.48 16 14 C 0.14 3.00 4.39 -5.10 -0.02 2.98 16 15 N -0.61 -14.02 2.80 -173.56 -0.49 -14.50 16 16 C -0.26 -7.04 10.14 -15.06 -0.15 -7.19 16 17 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 18 C 0.02 0.59 5.26 -17.43 -0.09 0.50 16 19 N -0.91 -27.63 13.97 55.49 0.78 -26.86 16 20 Si 0.88 21.82 24.17 -169.99 -4.11 17.71 16 21 H -0.29 -6.77 6.48 56.52 0.37 -6.40 16 22 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.27 -6.56 6.59 56.52 0.37 -6.19 16 24 C 0.15 2.72 6.59 -3.43 -0.02 2.70 16 25 C -0.09 -1.48 5.95 -28.09 -0.17 -1.65 16 26 C -0.14 -1.05 6.02 -24.48 -0.15 -1.20 16 27 H 0.06 0.36 8.12 -51.93 -0.42 -0.07 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.58 7.81 -51.93 -0.41 0.17 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.40 3.73 8.46 -40.82 -0.35 3.38 16 33 H 0.07 0.98 7.78 -51.93 -0.40 0.57 16 34 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.10 1.49 7.73 -52.48 -0.41 1.09 16 36 H 0.04 0.81 6.38 -51.93 -0.33 0.47 16 37 H 0.08 1.95 5.05 -51.93 -0.26 1.69 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 1.25 7.96 -51.93 -0.41 0.83 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.73 7.93 -51.92 -0.41 0.32 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -33.82 348.70 -8.34 -42.17 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.25 Total: 0.06 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.38 Total: -0.63 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.05 Total: -50.05 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.81 Total: -14.51 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.11 Total: 17.71 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.82 -8.34 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000972076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.430 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds