Wall clock time and date at job start Tue Mar 31 2020 06:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.75414 * 2 1 4 4 C 1.54388 * 110.84769 * 236.53179 * 2 1 3 5 5 O 1.43239 * 107.58762 * 220.45172 * 4 2 1 6 6 C 1.43646 * 109.97118 * 358.28828 * 5 4 2 7 7 H 1.09000 * 110.30997 * 265.41064 * 6 5 4 8 8 C 1.50698 * 110.30842 * 143.34060 * 6 5 4 9 9 O 1.21277 * 120.00397 * 356.45693 * 8 6 5 10 10 N 1.34781 * 120.00090 * 176.45328 * 8 6 5 11 11 C 1.46496 * 120.00210 * 180.02562 * 10 8 6 12 12 C 1.50702 * 109.47260 * 180.02562 * 11 10 8 13 13 C 1.29445 * 117.69841 * 94.99715 * 12 11 10 14 14 C 1.50323 * 123.65687 * 180.85724 * 13 12 11 15 15 N 1.47008 * 109.15831 * 349.02541 * 14 13 12 16 16 C 1.36945 * 121.36909 * 222.92000 * 15 14 13 17 17 H 1.08003 * 119.99493 * 155.36687 * 16 15 14 18 18 C 1.38804 * 120.00080 * 335.36605 * 16 15 14 19 19 N 1.31625 * 119.99974 * 159.82625 * 18 16 15 20 20 Si 1.86795 * 120.00304 * 339.81924 * 18 16 15 21 21 H 1.48501 * 109.46889 * 88.39150 * 20 18 16 22 22 H 1.48500 * 109.47553 * 208.39164 * 20 18 16 23 23 H 1.48502 * 109.47384 * 328.39096 * 20 18 16 24 24 C 1.47338 * 117.25592 * 42.94648 * 15 14 13 25 25 C 1.49969 * 117.68824 * 274.73549 * 12 11 10 26 26 C 1.54946 * 105.13793 * 24.42722 * 6 5 4 27 27 H 1.08995 * 109.46799 * 182.01357 * 1 2 3 28 28 H 1.09003 * 109.46799 * 62.01276 * 1 2 3 29 29 H 1.08999 * 109.47135 * 302.01598 * 1 2 3 30 30 H 1.08999 * 109.83095 * 339.96712 * 4 2 1 31 31 H 1.08998 * 109.83043 * 100.93889 * 4 2 1 32 32 H 0.96999 * 119.99467 * 359.97438 * 10 8 6 33 33 H 1.09002 * 109.47103 * 300.00215 * 11 10 8 34 34 H 1.08998 * 109.47550 * 59.99535 * 11 10 8 35 35 H 1.08010 * 118.17300 * 0.88306 * 13 12 11 36 36 H 1.09003 * 109.52323 * 108.92712 * 14 13 12 37 37 H 1.08997 * 109.52775 * 229.05866 * 14 13 12 38 38 H 0.96995 * 120.00295 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.77783 * 57.80664 * 24 15 14 40 40 H 1.09001 * 109.78019 * 178.61409 * 24 15 14 41 41 H 1.08995 * 109.31837 * 281.28509 * 25 12 11 42 42 H 1.09001 * 109.31731 * 40.71814 * 25 12 11 43 43 H 1.08995 * 111.12650 * 205.63620 * 26 6 5 44 44 H 1.09008 * 111.12619 * 81.47330 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0795 -0.7957 -1.2036 5 8 3.2045 -1.5538 -0.7440 6 6 3.4465 -1.2796 0.6452 7 1 4.1949 -0.4942 0.7510 8 6 3.8981 -2.5303 1.3542 9 8 3.9461 -3.5835 0.7549 10 7 4.2488 -2.4784 2.6546 11 6 4.6884 -3.6941 3.3438 12 6 5.0193 -3.3672 4.7772 13 6 4.0959 -3.5528 5.6653 14 6 4.2744 -3.2540 7.1276 15 7 5.6953 -2.9892 7.3961 16 6 6.3215 -3.5086 8.4977 17 1 7.3916 -3.6543 8.4919 18 6 5.5809 -3.8477 9.6216 19 7 6.0741 -4.6890 10.5056 20 14 3.8843 -3.1099 9.8798 21 1 2.8670 -3.9637 9.2155 22 1 3.5935 -3.0341 11.3341 23 1 3.8435 -1.7455 9.2951 24 6 6.4176 -2.1416 6.4314 25 6 6.3971 -2.8555 5.0751 26 6 2.0828 -0.8053 1.2075 27 1 -0.3633 -1.0270 0.0361 28 1 -0.3633 0.4823 -0.9075 29 1 -0.3633 0.5448 0.8713 30 1 1.3108 -1.4683 -1.5841 31 1 2.3929 -0.1083 -1.9892 32 1 4.2108 -1.6360 3.1338 33 1 3.8906 -4.4364 3.3156 34 1 5.5733 -4.0931 2.8481 35 1 3.1443 -3.9445 5.3373 36 1 3.6837 -2.3778 7.3952 37 1 3.9446 -4.1094 7.7172 38 1 5.5565 -4.9262 11.2908 39 1 5.9246 -1.1729 6.3501 40 1 7.4482 -2.0053 6.7595 41 1 7.0962 -3.6916 5.0932 42 1 6.6977 -2.1547 4.2962 43 1 2.2186 -0.1639 2.0782 44 1 1.4386 -1.6526 1.4426 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000972076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:40 Heat of formation + Delta-G solvation = -67.242409 kcal Electronic energy + Delta-G solvation = -23749.903074 eV Core-core repulsion = 20281.093874 eV Total energy + Delta-G solvation = -3468.809200 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43988 -40.00819 -39.25955 -36.52322 -34.73575 -34.45772 -33.10525 -31.93782 -31.36509 -28.60036 -27.27669 -25.94380 -25.01388 -24.20017 -22.82945 -21.78388 -21.26106 -19.69408 -18.71288 -18.15054 -17.44349 -17.34139 -16.87919 -16.47150 -16.25067 -15.96749 -15.62690 -15.57710 -15.05959 -14.93961 -14.50700 -14.41167 -14.33833 -13.92186 -13.71093 -13.55375 -13.32299 -13.25240 -12.98088 -12.76780 -12.55884 -12.19145 -12.17004 -12.12695 -11.95596 -11.70046 -11.52030 -11.40758 -11.06133 -10.73157 -10.51712 -10.16899 -9.81913 -8.98323 -8.15390 -5.47164 1.03591 1.31253 1.42197 1.50033 1.51248 2.09157 2.42637 2.97756 3.05171 3.31493 3.35982 3.64881 3.72198 3.81098 3.89524 4.03016 4.08671 4.25945 4.33319 4.41329 4.53128 4.54053 4.62909 4.64925 4.69564 4.71332 4.76017 4.80304 4.85118 4.91075 4.92053 5.02900 5.05209 5.20000 5.28284 5.34142 5.37895 5.61767 5.83460 5.87990 5.96970 6.15049 6.51508 6.88548 7.17286 7.60871 8.02675 9.04695 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025900 B = 0.003149 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.815556 B = 8890.354602 C = 9497.426112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 H 0.111 0.889 4 C 0.043 3.957 5 O -0.392 6.392 6 C 0.065 3.935 7 H 0.126 0.874 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.704 5.704 11 C 0.165 3.835 12 C -0.126 4.126 13 C -0.140 4.140 14 C 0.140 3.860 15 N -0.624 5.624 16 C -0.245 4.245 17 H 0.053 0.947 18 C -0.042 4.042 19 N -0.961 5.961 20 Si 0.951 3.049 21 H -0.270 1.270 22 H -0.313 1.313 23 H -0.258 1.258 24 C 0.141 3.859 25 C -0.090 4.090 26 C -0.138 4.138 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.417 0.583 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.261 0.739 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 14.427 -21.816 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 H 0.129 0.871 4 C -0.033 4.033 5 O -0.311 6.311 6 C 0.004 3.996 7 H 0.143 0.857 8 C 0.295 3.705 9 O -0.458 6.458 10 N -0.357 5.357 11 C 0.042 3.958 12 C -0.127 4.127 13 C -0.160 4.160 14 C 0.016 3.984 15 N -0.349 5.349 16 C -0.375 4.375 17 H 0.071 0.929 18 C -0.236 4.236 19 N -0.608 5.608 20 Si 0.779 3.221 21 H -0.196 1.196 22 H -0.242 1.242 23 H -0.182 1.182 24 C 0.016 3.984 25 C -0.128 4.128 26 C -0.176 4.176 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.254 0.746 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.142 0.858 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.139 0.861 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.022 13.465 -22.253 28.249 hybrid contribution -0.523 -0.029 1.061 1.184 sum -11.545 13.437 -21.191 27.621 Atomic orbital electron populations 1.21738 0.92715 1.02158 1.03338 1.22736 0.97848 1.00457 0.92458 0.87124 1.23528 0.87713 0.94484 0.97577 1.88498 1.50527 1.68623 1.23441 1.22999 1.00422 0.93590 0.82551 0.85704 1.21105 0.76607 0.90767 0.82069 1.90701 1.54609 1.33476 1.67015 1.45864 1.66997 1.12826 1.10031 1.20238 0.99582 0.86995 0.88976 1.20609 0.96149 1.02560 0.93368 1.22617 0.99569 0.99201 0.94607 1.20336 0.85712 0.98578 0.93806 1.44584 1.07349 1.57586 1.25380 1.18844 0.92924 1.34431 0.91274 0.92940 1.25910 1.02312 0.99315 0.96052 1.69976 1.40947 1.35475 1.14373 0.85923 0.80853 0.80207 0.75106 1.19650 1.24210 1.18246 1.21261 0.96466 0.92442 0.88201 1.20774 0.93503 1.00382 0.98182 1.23387 0.93047 1.00944 1.00223 0.93210 0.91071 0.90991 0.91545 0.89510 0.74607 0.91834 0.91560 0.85784 0.93476 0.92411 0.93000 0.92974 0.92188 0.92251 0.88561 0.86086 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.14 71.98 0.66 -0.44 16 2 C -0.12 -1.07 3.60 -9.53 -0.03 -1.10 16 3 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 4 C 0.04 0.62 7.40 72.45 0.54 1.16 16 5 O -0.39 -9.04 10.61 -130.50 -1.38 -10.42 16 6 C 0.06 1.12 3.86 30.51 0.12 1.24 16 7 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 8 C 0.51 12.41 7.17 87.66 0.63 13.04 16 9 O -0.58 -20.44 16.55 15.46 0.26 -20.18 16 10 N -0.70 -14.12 5.55 -466.79 -2.59 -16.71 16 11 C 0.17 4.12 5.66 85.63 0.48 4.60 16 12 C -0.13 -3.51 5.22 -15.13 -0.08 -3.59 16 13 C -0.14 -4.35 9.47 27.11 0.26 -4.09 16 14 C 0.14 5.61 4.39 85.42 0.37 5.98 16 15 N -0.62 -28.24 2.80 -703.02 -1.97 -30.21 16 16 C -0.25 -13.75 10.14 84.03 0.85 -12.90 16 17 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 18 C -0.04 -2.42 5.26 84.86 0.45 -1.97 16 19 N -0.96 -60.48 13.97 21.65 0.30 -60.18 16 20 Si 0.95 45.31 24.17 68.60 1.66 46.97 16 21 H -0.27 -12.02 6.48 99.48 0.64 -11.37 16 22 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 23 H -0.26 -11.51 6.59 99.48 0.66 -10.85 16 24 C 0.14 4.92 6.59 86.32 0.57 5.49 16 25 C -0.09 -2.57 5.95 29.72 0.18 -2.39 16 26 C -0.14 -1.59 6.02 32.05 0.19 -1.40 16 27 H 0.05 0.50 8.12 -2.39 -0.02 0.48 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 1.00 7.81 -2.39 -0.02 0.98 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.42 5.89 8.46 -92.71 -0.78 5.11 16 33 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 34 H 0.07 1.77 8.11 -2.39 -0.02 1.75 16 35 H 0.12 3.29 7.73 -2.91 -0.02 3.27 16 36 H 0.05 1.82 6.38 -2.39 -0.02 1.80 16 37 H 0.06 2.61 5.05 -2.39 -0.01 2.60 16 38 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 2.16 7.96 -2.39 -0.02 2.14 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 1.05 7.93 -2.38 -0.02 1.03 16 Total: -1.00 -76.58 348.70 1.54 -75.04 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.09 Total: 12.04 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.18 Total: 3.63 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -4.26 Total: -107.09 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.13 Total: -30.60 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.66 Total: 46.97 kcal Total: -76.58 1.54 -75.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000972076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.800 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds