Wall clock time and date at job start Tue Mar 31 2020 06:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.54080 * 2 1 4 4 C 1.54101 * 110.49115 * 122.62029 * 2 1 3 5 5 O 1.43740 * 107.29518 * 116.64600 * 4 2 1 6 6 C 1.44386 * 106.97426 * 26.51357 * 5 4 2 7 7 H 1.09001 * 110.74983 * 78.50840 * 6 5 4 8 8 C 1.50697 * 110.61590 * 201.43862 * 6 5 4 9 9 O 1.21285 * 120.00337 * 359.06746 * 8 6 5 10 10 N 1.34783 * 119.99825 * 179.07485 * 8 6 5 11 11 C 1.46497 * 119.99838 * 180.02562 * 10 8 6 12 12 C 1.50700 * 109.46979 * 180.02562 * 11 10 8 13 13 C 1.29446 * 117.69784 * 94.99759 * 12 11 10 14 14 C 1.50324 * 123.65127 * 180.85656 * 13 12 11 15 15 N 1.47006 * 109.16715 * 349.02289 * 14 13 12 16 16 C 1.36934 * 121.37816 * 222.92309 * 15 14 13 17 17 H 1.07998 * 120.00314 * 155.35759 * 16 15 14 18 18 C 1.38814 * 119.99996 * 335.36538 * 16 15 14 19 19 N 1.31616 * 120.00254 * 159.81891 * 18 16 15 20 20 Si 1.86799 * 119.99740 * 339.81874 * 18 16 15 21 21 H 1.48502 * 109.47359 * 88.38961 * 20 18 16 22 22 H 1.48504 * 109.47233 * 208.39020 * 20 18 16 23 23 H 1.48502 * 109.47564 * 328.39024 * 20 18 16 24 24 C 1.47338 * 117.25003 * 42.94677 * 15 14 13 25 25 C 1.49972 * 117.68837 * 274.73363 * 12 11 10 26 26 C 1.54810 * 110.48676 * 237.38754 * 2 1 3 27 27 H 1.09003 * 109.46751 * 182.61239 * 1 2 3 28 28 H 1.09000 * 109.46945 * 302.61340 * 1 2 3 29 29 H 1.08999 * 109.47222 * 62.61641 * 1 2 3 30 30 H 1.08997 * 109.87487 * 236.07247 * 4 2 1 31 31 H 1.08998 * 109.87566 * 357.22074 * 4 2 1 32 32 H 0.96999 * 119.99836 * 359.97438 * 10 8 6 33 33 H 1.09003 * 109.47545 * 59.99666 * 11 10 8 34 34 H 1.09002 * 109.47379 * 299.99487 * 11 10 8 35 35 H 1.07997 * 118.17755 * 0.88304 * 13 12 11 36 36 H 1.09000 * 109.52070 * 108.92752 * 14 13 12 37 37 H 1.09005 * 109.52452 * 229.05018 * 14 13 12 38 38 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 39 39 H 1.09007 * 109.77972 * 57.80817 * 24 15 14 40 40 H 1.08993 * 109.78129 * 178.56463 * 24 15 14 41 41 H 1.08996 * 109.31585 * 281.28638 * 25 12 11 42 42 H 1.09000 * 109.31855 * 40.72027 * 25 12 11 43 43 H 1.09004 * 110.90855 * 102.24468 * 26 2 1 44 44 H 1.08997 * 110.94240 * 338.65477 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0695 -0.7781 1.2158 5 8 2.7956 -1.9109 0.7102 6 6 3.2660 -1.5560 -0.6079 7 1 4.1465 -0.9165 -0.5445 8 6 3.5674 -2.7927 -1.4146 9 8 3.4182 -3.8903 -0.9206 10 7 4.0028 -2.6790 -2.6851 11 6 4.2953 -3.8812 -3.4695 12 6 4.7625 -3.4819 -4.8454 13 6 6.0384 -3.3990 -5.0471 14 6 6.6498 -2.9953 -6.3597 15 7 5.6054 -2.9801 -7.3942 16 6 5.8306 -3.4964 -8.6423 17 1 5.0012 -3.8429 -9.2411 18 6 7.1249 -3.5748 -9.1379 19 7 7.4035 -4.4022 -10.1229 20 14 8.4712 -2.5060 -8.4068 21 1 9.0964 -3.2127 -7.2601 22 1 9.5015 -2.2316 -9.4405 23 1 7.8861 -1.2239 -7.9386 24 6 4.3066 -2.3857 -7.0329 25 6 3.7163 -3.2144 -5.8862 26 6 2.0719 -0.7816 -1.2215 27 1 -0.3633 -1.0266 0.0468 28 1 -0.3633 0.5539 0.8656 29 1 -0.3633 0.4727 -0.9125 30 1 2.7351 -0.1409 1.7980 31 1 1.2402 -1.1166 1.8368 32 1 4.1219 -1.8012 -3.0802 33 1 3.3940 -4.4885 -3.5534 34 1 5.0767 -4.4573 -2.9739 35 1 6.7006 -3.6334 -4.2268 36 1 7.0859 -2.0006 -6.2678 37 1 7.4261 -3.7093 -6.6350 38 1 8.3078 -4.4566 -10.4694 39 1 4.4496 -1.3539 -6.7117 40 1 3.6359 -2.4150 -7.8915 41 1 3.3446 -4.1621 -6.2757 42 1 2.8906 -2.6647 -5.4345 43 1 2.4103 -0.0990 -2.0011 44 1 1.3200 -1.4692 -1.6088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000972077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:44 Heat of formation + Delta-G solvation = -43.148966 kcal Electronic energy + Delta-G solvation = -23749.939688 eV Core-core repulsion = 20282.175258 eV Total energy + Delta-G solvation = -3467.764430 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57268 -38.97627 -37.96247 -35.16712 -33.92074 -33.02865 -31.44523 -30.53062 -30.34721 -27.19967 -26.68449 -24.60219 -23.57898 -23.20554 -21.24514 -20.93787 -20.47586 -18.12151 -17.63110 -17.21766 -16.21619 -15.91239 -15.66288 -15.36765 -15.21527 -14.76311 -14.39969 -14.19668 -14.05220 -13.79238 -13.37847 -13.21293 -13.10629 -12.93447 -12.61163 -12.21921 -12.06714 -11.92638 -11.72500 -11.62567 -11.49872 -11.38145 -11.19912 -10.88174 -10.39229 -10.31183 -10.16013 -9.92443 -9.76589 -9.53561 -9.12232 -8.70154 -8.48443 -7.07363 -5.97936 -3.33556 2.24955 2.47574 3.02143 3.27266 3.43321 3.45781 3.74674 4.02081 4.28091 4.42488 4.48394 4.63160 4.67886 4.78597 4.83690 5.00023 5.02359 5.14348 5.18537 5.22632 5.31637 5.37849 5.45560 5.52976 5.58817 5.60127 5.76648 5.79340 5.82050 5.92147 6.07043 6.11028 6.29382 6.32863 6.42327 6.44800 6.50866 6.69576 6.95950 7.29893 7.41290 7.86092 8.11139 8.28443 8.86451 9.66805 10.04809 11.18230 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030030 B = 0.002996 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.166786 B = 9344.554896 C = 9495.274259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.087 0.913 4 C 0.046 3.954 5 O -0.347 6.347 6 C 0.059 3.941 7 H 0.096 0.904 8 C 0.516 3.484 9 O -0.523 6.523 10 N -0.719 5.719 11 C 0.157 3.843 12 C -0.148 4.148 13 C -0.126 4.126 14 C 0.143 3.857 15 N -0.607 5.607 16 C -0.256 4.256 17 H 0.088 0.912 18 C 0.021 3.979 19 N -0.908 5.908 20 Si 0.884 3.116 21 H -0.287 1.287 22 H -0.303 1.303 23 H -0.273 1.273 24 C 0.147 3.853 25 C -0.094 4.094 26 C -0.141 4.141 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.401 0.599 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.263 0.737 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 11.233 19.716 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.031 4.031 5 O -0.265 6.265 6 C -0.002 4.002 7 H 0.114 0.886 8 C 0.300 3.700 9 O -0.398 6.398 10 N -0.372 5.372 11 C 0.034 3.966 12 C -0.148 4.148 13 C -0.146 4.146 14 C 0.018 3.982 15 N -0.331 5.331 16 C -0.384 4.384 17 H 0.106 0.894 18 C -0.178 4.178 19 N -0.552 5.552 20 Si 0.714 3.286 21 H -0.214 1.214 22 H -0.231 1.231 23 H -0.198 1.198 24 C 0.021 3.979 25 C -0.133 4.133 26 C -0.179 4.179 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.236 0.764 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.951 10.132 20.045 24.988 hybrid contribution 1.007 1.150 0.125 1.534 sum -9.943 11.281 20.171 25.160 Atomic orbital electron populations 1.21833 0.93584 1.02510 1.02241 1.22547 0.97453 1.00097 0.94395 0.89446 1.23366 0.95921 0.87863 0.95909 1.89028 1.71916 1.36808 1.28788 1.22984 0.98436 0.94066 0.84742 0.88633 1.20162 0.77441 0.90359 0.82004 1.90734 1.51058 1.27791 1.70262 1.46051 1.67878 1.10616 1.12629 1.20475 1.00938 0.86379 0.88780 1.20576 0.95372 1.04666 0.94221 1.22810 0.95686 0.97100 0.99053 1.20368 0.92742 0.98874 0.86247 1.44434 1.09724 1.69244 1.09674 1.18899 0.94385 1.34091 0.91066 0.89414 1.25228 0.97289 0.98686 0.96578 1.69826 1.20264 1.36022 1.29054 0.87012 0.82055 0.82282 0.77201 1.21443 1.23091 1.19838 1.21032 0.87923 0.93562 0.95401 1.20827 0.95622 1.01309 0.95550 1.23225 0.97213 0.99209 0.98256 0.92050 0.92196 0.92036 0.92047 0.89330 0.76429 0.91092 0.91303 0.88096 0.94328 0.89759 0.92698 0.95442 0.91438 0.90947 0.92308 0.89132 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.92 37.16 0.33 -0.47 16 2 C -0.13 -0.78 3.65 -89.09 -0.32 -1.11 16 3 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 4 C 0.05 0.36 7.37 37.73 0.28 0.64 16 5 O -0.35 -4.24 10.80 -54.30 -0.59 -4.82 16 6 C 0.06 0.59 3.76 -26.83 -0.10 0.49 16 7 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 8 C 0.52 6.80 7.21 -10.98 -0.08 6.72 16 9 O -0.52 -9.35 16.57 -13.52 -0.22 -9.58 16 10 N -0.72 -8.31 5.54 -61.47 -0.34 -8.65 16 11 C 0.16 2.14 5.66 -5.20 -0.03 2.11 16 12 C -0.15 -2.26 5.22 -100.99 -0.53 -2.79 16 13 C -0.13 -2.14 9.47 -35.78 -0.34 -2.48 16 14 C 0.14 3.00 4.38 -5.10 -0.02 2.98 16 15 N -0.61 -13.99 2.80 -173.56 -0.49 -14.48 16 16 C -0.26 -7.04 10.14 -15.06 -0.15 -7.19 16 17 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 18 C 0.02 0.60 5.26 -17.43 -0.09 0.50 16 19 N -0.91 -27.61 13.97 55.49 0.78 -26.84 16 20 Si 0.88 21.85 24.17 -169.99 -4.11 17.74 16 21 H -0.29 -6.78 6.48 56.52 0.37 -6.42 16 22 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 23 H -0.27 -6.57 6.59 56.52 0.37 -6.20 16 24 C 0.15 2.70 6.59 -3.43 -0.02 2.68 16 25 C -0.09 -1.46 5.95 -28.08 -0.17 -1.63 16 26 C -0.14 -1.04 6.12 -24.72 -0.15 -1.19 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.63 7.69 -51.93 -0.40 0.23 16 32 H 0.40 3.72 8.46 -40.82 -0.35 3.37 16 33 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.07 0.99 7.78 -51.93 -0.40 0.59 16 35 H 0.10 1.51 7.73 -52.49 -0.41 1.11 16 36 H 0.04 0.81 6.38 -51.93 -0.33 0.48 16 37 H 0.08 1.96 5.05 -51.93 -0.26 1.70 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 1.24 7.96 -51.93 -0.41 0.82 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.72 7.78 -51.93 -0.40 0.32 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -33.79 348.46 -8.35 -42.15 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.24 Total: -0.05 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.40 Total: -0.72 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.05 Total: -49.96 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.81 Total: -14.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.11 Total: 17.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.79 -8.35 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000972077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.002 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds