Wall clock time and date at job start Tue Mar 31 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.54080 * 2 1 4 4 C 1.54101 * 110.49115 * 122.62029 * 2 1 3 5 5 O 1.43740 * 107.29518 * 116.64600 * 4 2 1 6 6 C 1.44386 * 106.97426 * 26.51357 * 5 4 2 7 7 H 1.09001 * 110.74983 * 78.50840 * 6 5 4 8 8 C 1.50697 * 110.61590 * 201.43862 * 6 5 4 9 9 O 1.21285 * 120.00337 * 359.06746 * 8 6 5 10 10 N 1.34783 * 119.99825 * 179.07485 * 8 6 5 11 11 C 1.46497 * 119.99838 * 180.02562 * 10 8 6 12 12 C 1.50700 * 109.46979 * 180.02562 * 11 10 8 13 13 C 1.29446 * 117.69784 * 94.99759 * 12 11 10 14 14 C 1.50324 * 123.65127 * 180.85656 * 13 12 11 15 15 N 1.47006 * 109.16715 * 349.02289 * 14 13 12 16 16 C 1.36934 * 121.37816 * 222.92309 * 15 14 13 17 17 H 1.07998 * 120.00314 * 155.35759 * 16 15 14 18 18 C 1.38814 * 119.99996 * 335.36538 * 16 15 14 19 19 N 1.31616 * 120.00254 * 159.81891 * 18 16 15 20 20 Si 1.86799 * 119.99740 * 339.81874 * 18 16 15 21 21 H 1.48502 * 109.47359 * 88.38961 * 20 18 16 22 22 H 1.48504 * 109.47233 * 208.39020 * 20 18 16 23 23 H 1.48502 * 109.47564 * 328.39024 * 20 18 16 24 24 C 1.47338 * 117.25003 * 42.94677 * 15 14 13 25 25 C 1.49972 * 117.68837 * 274.73363 * 12 11 10 26 26 C 1.54810 * 110.48676 * 237.38754 * 2 1 3 27 27 H 1.09003 * 109.46751 * 182.61239 * 1 2 3 28 28 H 1.09000 * 109.46945 * 302.61340 * 1 2 3 29 29 H 1.08999 * 109.47222 * 62.61641 * 1 2 3 30 30 H 1.08997 * 109.87487 * 236.07247 * 4 2 1 31 31 H 1.08998 * 109.87566 * 357.22074 * 4 2 1 32 32 H 0.96999 * 119.99836 * 359.97438 * 10 8 6 33 33 H 1.09003 * 109.47545 * 59.99666 * 11 10 8 34 34 H 1.09002 * 109.47379 * 299.99487 * 11 10 8 35 35 H 1.07997 * 118.17755 * 0.88304 * 13 12 11 36 36 H 1.09000 * 109.52070 * 108.92752 * 14 13 12 37 37 H 1.09005 * 109.52452 * 229.05018 * 14 13 12 38 38 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 39 39 H 1.09007 * 109.77972 * 57.80817 * 24 15 14 40 40 H 1.08993 * 109.78129 * 178.56463 * 24 15 14 41 41 H 1.08996 * 109.31585 * 281.28638 * 25 12 11 42 42 H 1.09000 * 109.31855 * 40.72027 * 25 12 11 43 43 H 1.09004 * 110.90855 * 102.24468 * 26 2 1 44 44 H 1.08997 * 110.94240 * 338.65477 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0695 -0.7781 1.2158 5 8 2.7956 -1.9109 0.7102 6 6 3.2660 -1.5560 -0.6079 7 1 4.1465 -0.9165 -0.5445 8 6 3.5674 -2.7927 -1.4146 9 8 3.4182 -3.8903 -0.9206 10 7 4.0028 -2.6790 -2.6851 11 6 4.2953 -3.8812 -3.4695 12 6 4.7625 -3.4819 -4.8454 13 6 6.0384 -3.3990 -5.0471 14 6 6.6498 -2.9953 -6.3597 15 7 5.6054 -2.9801 -7.3942 16 6 5.8306 -3.4964 -8.6423 17 1 5.0012 -3.8429 -9.2411 18 6 7.1249 -3.5748 -9.1379 19 7 7.4035 -4.4022 -10.1229 20 14 8.4712 -2.5060 -8.4068 21 1 9.0964 -3.2127 -7.2601 22 1 9.5015 -2.2316 -9.4405 23 1 7.8861 -1.2239 -7.9386 24 6 4.3066 -2.3857 -7.0329 25 6 3.7163 -3.2144 -5.8862 26 6 2.0719 -0.7816 -1.2215 27 1 -0.3633 -1.0266 0.0468 28 1 -0.3633 0.5539 0.8656 29 1 -0.3633 0.4727 -0.9125 30 1 2.7351 -0.1409 1.7980 31 1 1.2402 -1.1166 1.8368 32 1 4.1219 -1.8012 -3.0802 33 1 3.3940 -4.4885 -3.5534 34 1 5.0767 -4.4573 -2.9739 35 1 6.7006 -3.6334 -4.2268 36 1 7.0859 -2.0006 -6.2678 37 1 7.4261 -3.7093 -6.6350 38 1 8.3078 -4.4566 -10.4694 39 1 4.4496 -1.3539 -6.7117 40 1 3.6359 -2.4150 -7.8915 41 1 3.3446 -4.1621 -6.2757 42 1 2.8906 -2.6647 -5.4345 43 1 2.4103 -0.0990 -2.0011 44 1 1.3200 -1.4692 -1.6088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000972077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:43 Heat of formation + Delta-G solvation = -66.823477 kcal Electronic energy + Delta-G solvation = -23750.966292 eV Core-core repulsion = 20282.175258 eV Total energy + Delta-G solvation = -3468.791033 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42316 -40.01144 -39.27523 -36.53033 -34.71771 -34.41389 -33.10537 -31.93494 -31.32593 -28.59359 -27.23116 -25.96257 -25.03759 -24.28360 -22.83709 -21.60759 -21.30553 -19.70187 -18.75687 -18.00132 -17.45282 -17.34449 -17.02539 -16.33572 -16.18512 -15.96167 -15.72829 -15.58250 -15.02896 -15.01700 -14.57416 -14.40381 -14.33679 -13.70492 -13.61937 -13.54339 -13.48977 -13.27551 -12.95479 -12.75514 -12.56015 -12.18381 -12.13293 -12.10768 -11.92347 -11.66400 -11.52147 -11.40619 -11.00126 -10.73112 -10.64280 -10.17923 -9.82682 -8.98317 -8.15468 -5.47038 1.03107 1.31291 1.41990 1.49377 1.50902 2.07191 2.42513 3.04569 3.05604 3.31633 3.42261 3.65775 3.71237 3.85646 3.89769 4.02561 4.10233 4.24539 4.33160 4.41550 4.53806 4.58161 4.63317 4.65376 4.70241 4.71677 4.74918 4.83751 4.85391 4.91665 4.93942 5.05388 5.06810 5.17291 5.27874 5.33801 5.37152 5.61992 5.80161 5.83563 5.96921 6.15040 6.49858 6.88580 7.15821 7.60938 8.02870 9.04568 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030030 B = 0.002996 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.166786 B = 9344.554896 C = 9495.274259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 H 0.111 0.889 4 C 0.039 3.961 5 O -0.388 6.388 6 C 0.059 3.941 7 H 0.123 0.877 8 C 0.514 3.486 9 O -0.578 6.578 10 N -0.703 5.703 11 C 0.165 3.835 12 C -0.126 4.126 13 C -0.141 4.141 14 C 0.140 3.860 15 N -0.624 5.624 16 C -0.245 4.245 17 H 0.054 0.946 18 C -0.041 4.041 19 N -0.961 5.961 20 Si 0.950 3.050 21 H -0.271 1.271 22 H -0.313 1.313 23 H -0.258 1.258 24 C 0.140 3.860 25 C -0.089 4.089 26 C -0.137 4.137 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.417 0.583 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.261 0.739 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 14.053 21.977 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 H 0.129 0.871 4 C -0.038 4.038 5 O -0.307 6.307 6 C -0.001 4.001 7 H 0.140 0.860 8 C 0.301 3.699 9 O -0.457 6.457 10 N -0.356 5.356 11 C 0.042 3.958 12 C -0.127 4.127 13 C -0.161 4.161 14 C 0.015 3.985 15 N -0.349 5.349 16 C -0.374 4.374 17 H 0.071 0.929 18 C -0.236 4.236 19 N -0.607 5.607 20 Si 0.778 3.222 21 H -0.197 1.197 22 H -0.242 1.242 23 H -0.183 1.183 24 C 0.016 3.984 25 C -0.128 4.128 26 C -0.175 4.175 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.254 0.746 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.137 0.863 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.513 13.015 22.340 28.302 hybrid contribution 1.018 0.241 -0.561 1.187 sum -10.495 13.255 21.778 27.571 Atomic orbital electron populations 1.21835 0.93342 1.01802 1.03169 1.22564 0.97608 1.00774 0.92829 0.87064 1.23588 0.96100 0.87268 0.96802 1.88989 1.72714 1.39150 1.29869 1.23141 1.00506 0.92609 0.83894 0.85954 1.20816 0.76176 0.90771 0.82154 1.90711 1.53493 1.30085 1.71421 1.45841 1.67002 1.10695 1.12104 1.20247 1.00568 0.87122 0.87846 1.20614 0.94764 1.02533 0.94750 1.22623 0.96578 0.99127 0.97764 1.20333 0.91995 0.98676 0.87446 1.44581 1.11864 1.69768 1.08673 1.18845 0.93348 1.32662 0.92565 0.92860 1.25901 0.99949 1.00053 0.97652 1.69972 1.20759 1.38276 1.31715 0.85939 0.78837 0.80869 0.76528 1.19730 1.24246 1.18256 1.21267 0.85791 0.95019 0.96320 1.20771 0.96611 1.00730 0.94646 1.23267 0.95747 0.99149 0.99302 0.93623 0.91085 0.91295 0.90493 0.89393 0.74582 0.91416 0.91849 0.85850 0.93536 0.92424 0.93011 0.92986 0.92132 0.92221 0.88449 0.86289 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.92 71.98 0.64 -0.59 16 2 C -0.12 -1.08 3.65 -9.80 -0.04 -1.11 16 3 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 4 C 0.04 0.52 7.37 72.35 0.53 1.05 16 5 O -0.39 -8.94 10.80 -130.75 -1.41 -10.35 16 6 C 0.06 1.02 3.76 30.53 0.11 1.14 16 7 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 8 C 0.51 12.55 7.21 87.65 0.63 13.18 16 9 O -0.58 -20.40 16.57 15.19 0.25 -20.15 16 10 N -0.70 -14.03 5.54 -466.78 -2.58 -16.62 16 11 C 0.17 4.09 5.66 85.63 0.48 4.58 16 12 C -0.13 -3.49 5.22 -15.13 -0.08 -3.56 16 13 C -0.14 -4.40 9.47 27.11 0.26 -4.14 16 14 C 0.14 5.62 4.38 85.42 0.37 6.00 16 15 N -0.62 -28.18 2.80 -703.01 -1.97 -30.15 16 16 C -0.24 -13.69 10.14 84.03 0.85 -12.84 16 17 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 18 C -0.04 -2.40 5.26 84.86 0.45 -1.95 16 19 N -0.96 -60.42 13.97 21.65 0.30 -60.12 16 20 Si 0.95 45.45 24.17 68.60 1.66 47.11 16 21 H -0.27 -12.14 6.48 99.48 0.64 -11.49 16 22 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 23 H -0.26 -11.56 6.59 99.48 0.66 -10.91 16 24 C 0.14 4.87 6.59 86.32 0.57 5.44 16 25 C -0.09 -2.50 5.95 29.72 0.18 -2.33 16 26 C -0.14 -1.54 6.12 31.89 0.20 -1.35 16 27 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.14 7.69 -2.39 -0.02 1.12 16 32 H 0.42 5.86 8.46 -92.71 -0.78 5.07 16 33 H 0.07 1.77 8.11 -2.39 -0.02 1.76 16 34 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 35 H 0.12 3.32 7.73 -2.91 -0.02 3.30 16 36 H 0.05 1.81 6.38 -2.39 -0.02 1.79 16 37 H 0.06 2.62 5.05 -2.38 -0.01 2.61 16 38 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.10 2.03 8.14 -2.39 -0.02 2.02 16 43 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.07 1.03 7.78 -2.39 -0.02 1.01 16 Total: -1.00 -76.63 348.46 1.50 -75.13 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.09 Total: 11.64 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.16 Total: 3.51 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -4.25 Total: -106.88 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.16 Total: -30.50 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.66 Total: 47.11 kcal Total: -76.63 1.50 -75.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000972077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.307 kcal (2) G-P(sol) polarization free energy of solvation -76.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds