Wall clock time and date at job start Tue Mar 31 2020 06:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.80838 * 2 1 4 4 C 1.55005 * 110.90596 * 123.62595 * 2 1 3 5 5 O 1.44382 * 103.48856 * 155.21805 * 4 2 1 6 6 C 1.43748 * 106.97782 * 319.94165 * 5 4 2 7 7 H 1.09005 * 109.87593 * 266.94455 * 6 5 4 8 8 C 1.50690 * 109.88136 * 145.93936 * 6 5 4 9 9 O 1.21279 * 119.99973 * 356.44753 * 8 6 5 10 10 N 1.34780 * 120.00291 * 176.45190 * 8 6 5 11 11 C 1.46494 * 120.00353 * 179.97438 * 10 8 6 12 12 C 1.50704 * 109.47200 * 180.02562 * 11 10 8 13 13 C 1.29454 * 117.69178 * 94.98267 * 12 11 10 14 14 C 1.49925 * 123.62918 * 180.62035 * 13 12 11 15 15 N 1.47003 * 109.38596 * 349.43005 * 14 13 12 16 16 C 1.36944 * 121.37678 * 222.82997 * 15 14 13 17 17 H 1.07998 * 120.00262 * 151.65949 * 16 15 14 18 18 C 1.38816 * 119.99527 * 331.66639 * 16 15 14 19 19 N 1.31618 * 119.99909 * 140.71878 * 18 16 15 20 20 Si 1.86795 * 119.99919 * 320.71415 * 18 16 15 21 21 H 1.48503 * 109.47072 * 270.00495 * 20 18 16 22 22 H 1.48502 * 109.47155 * 30.00573 * 20 18 16 23 23 H 1.48503 * 109.47141 * 150.00438 * 20 18 16 24 24 C 1.47338 * 117.25436 * 42.56109 * 15 14 13 25 25 C 1.49972 * 117.69313 * 275.00107 * 12 11 10 26 26 C 1.54099 * 107.29413 * 26.50911 * 6 5 4 27 27 H 1.09006 * 109.46588 * 297.83196 * 1 2 3 28 28 H 1.08999 * 109.47076 * 57.82399 * 1 2 3 29 29 H 1.09002 * 109.47348 * 177.83067 * 1 2 3 30 30 H 1.09004 * 110.61549 * 36.71927 * 4 2 1 31 31 H 1.09001 * 110.61525 * 273.71726 * 4 2 1 32 32 H 0.97004 * 119.99480 * 359.97438 * 10 8 6 33 33 H 1.09008 * 109.46726 * 60.00492 * 11 10 8 34 34 H 1.08999 * 109.47240 * 300.00592 * 11 10 8 35 35 H 1.07995 * 118.17401 * 0.87833 * 13 12 11 36 36 H 1.09001 * 109.50316 * 229.40227 * 14 13 12 37 37 H 1.08994 * 109.31707 * 109.34757 * 14 13 12 38 38 H 0.96997 * 120.00027 * 356.51084 * 19 18 16 39 39 H 1.08997 * 109.77730 * 58.07557 * 24 15 14 40 40 H 1.08994 * 109.78440 * 178.89227 * 24 15 14 41 41 H 1.08998 * 109.31288 * 40.72328 * 25 12 11 42 42 H 1.08993 * 109.31923 * 281.29209 * 25 12 11 43 43 H 1.09004 * 110.48677 * 116.64745 * 26 6 5 44 44 H 1.09000 * 110.49529 * 239.29647 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0831 -0.8019 1.2057 5 8 3.3941 -1.2142 0.7630 6 6 3.2718 -1.5886 -0.6195 7 1 3.0850 -2.6596 -0.6983 8 6 4.5349 -1.2330 -1.3603 9 8 5.4312 -0.6514 -0.7865 10 7 4.6685 -1.5611 -2.6607 11 6 5.8962 -1.2149 -3.3811 12 6 5.7921 -1.6889 -4.8079 13 6 5.3832 -0.8400 -5.6955 14 6 5.2177 -1.1724 -7.1481 15 7 5.8215 -2.4848 -7.4202 16 6 6.5843 -2.7010 -8.5368 17 1 7.3648 -3.4473 -8.5213 18 6 6.3543 -1.9608 -9.6884 19 7 7.3686 -1.5447 -10.4167 20 14 4.6054 -1.5555 -10.2044 21 1 4.0890 -2.6298 -11.0900 22 1 3.7450 -1.4517 -8.9985 23 1 4.5919 -0.2626 -10.9348 24 6 5.5771 -3.5564 -6.4390 25 6 6.1692 -3.1110 -5.0991 26 6 2.0824 -0.8019 -1.2036 27 1 -0.3633 0.4798 0.9089 28 1 -0.3633 0.5473 -0.8698 29 1 -0.3634 -1.0269 -0.0389 30 1 1.4561 -1.6699 1.4094 31 1 2.1583 -0.1658 2.0877 32 1 3.9517 -2.0265 -3.1196 33 1 6.7479 -1.6955 -2.8995 34 1 6.0332 -0.1337 -3.3669 35 1 5.1523 0.1642 -5.3724 36 1 5.7106 -0.4121 -7.7539 37 1 4.1559 -1.2022 -7.3924 38 1 8.2777 -1.7114 -10.1224 39 1 4.5050 -3.7210 -6.3319 40 1 6.0610 -4.4758 -6.7686 41 1 5.7895 -3.7544 -4.3055 42 1 7.2552 -3.1951 -5.1391 43 1 2.4209 -0.1261 -1.9891 44 1 1.3245 -1.4849 -1.5871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000972079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:49 Heat of formation + Delta-G solvation = -45.444357 kcal Electronic energy + Delta-G solvation = -23752.658894 eV Core-core repulsion = 20284.794929 eV Total energy + Delta-G solvation = -3467.863965 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60169 -38.89032 -37.85731 -35.09750 -33.95245 -33.05925 -31.46556 -30.47348 -30.22729 -27.04864 -26.65265 -24.34796 -23.28967 -23.07746 -21.10203 -21.01493 -20.48001 -18.30586 -17.84501 -16.58007 -16.45869 -16.19897 -15.64104 -15.30737 -15.04343 -14.60873 -14.38760 -14.18061 -13.92072 -13.75279 -13.55962 -13.30659 -13.06715 -12.67115 -12.58560 -12.22792 -12.10245 -11.95193 -11.74227 -11.63664 -11.26855 -11.18933 -11.14734 -10.60564 -10.53687 -10.36226 -10.07822 -9.73218 -9.65653 -9.42525 -9.09001 -8.48893 -8.17962 -7.06172 -6.40964 -3.27509 2.30662 2.51046 3.08643 3.47410 3.53572 3.67906 3.72933 4.05928 4.32519 4.40898 4.56880 4.61482 4.77858 4.85978 4.90120 5.01136 5.03230 5.14343 5.18850 5.25517 5.31619 5.34275 5.41398 5.57151 5.62975 5.64961 5.78587 5.79718 5.87610 5.98507 6.13647 6.19286 6.33944 6.44722 6.49784 6.56071 6.60632 6.76514 7.03046 7.37892 7.45123 8.03323 8.14690 8.40671 8.98619 9.61366 10.23909 10.97713 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003138 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.497002 B = 8920.188540 C = 9551.373017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 H 0.088 0.912 4 C 0.048 3.952 5 O -0.347 6.347 6 C 0.061 3.939 7 H 0.095 0.905 8 C 0.509 3.491 9 O -0.525 6.525 10 N -0.720 5.720 11 C 0.157 3.843 12 C -0.152 4.152 13 C -0.127 4.127 14 C 0.157 3.843 15 N -0.597 5.597 16 C -0.365 4.365 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.891 5.891 20 Si 1.015 2.985 21 H -0.296 1.296 22 H -0.271 1.271 23 H -0.294 1.294 24 C 0.141 3.859 25 C -0.093 4.093 26 C -0.144 4.144 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.401 0.599 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.268 0.732 39 H 0.023 0.977 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 0.666 20.068 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.029 4.029 5 O -0.265 6.265 6 C -0.001 4.001 7 H 0.112 0.888 8 C 0.294 3.706 9 O -0.400 6.400 10 N -0.373 5.373 11 C 0.035 3.965 12 C -0.152 4.152 13 C -0.148 4.148 14 C 0.032 3.968 15 N -0.321 5.321 16 C -0.493 4.493 17 H 0.081 0.919 18 C -0.199 4.199 19 N -0.527 5.527 20 Si 0.845 3.155 21 H -0.224 1.224 22 H -0.197 1.197 23 H -0.220 1.220 24 C 0.015 3.985 25 C -0.132 4.132 26 C -0.182 4.182 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.236 0.764 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.523 1.803 19.413 24.311 hybrid contribution 0.417 -0.953 0.788 1.305 sum -14.106 0.851 20.201 24.653 Atomic orbital electron populations 1.21730 0.93471 1.02325 1.02427 1.22749 0.96793 1.00543 0.94423 0.89354 1.23734 0.83983 0.97731 0.97433 1.89015 1.29057 1.86180 1.22268 1.22626 0.93414 1.00079 0.83933 0.88787 1.20454 0.88570 0.79488 0.82098 1.90720 1.41627 1.40302 1.67345 1.46089 1.20402 1.60477 1.10331 1.20467 0.86326 0.99883 0.89860 1.20556 1.04476 0.97333 0.92863 1.22886 0.96445 0.97864 0.97561 1.20304 0.97195 0.88890 0.90394 1.44348 1.60230 1.04198 1.23320 1.19917 1.12653 1.26308 0.90383 0.91901 1.26143 1.04476 0.96077 0.93170 1.70901 1.00054 1.37714 1.44030 0.84640 0.78162 0.76125 0.76615 1.22425 1.19730 1.22024 1.21039 0.96626 0.92350 0.88488 1.20765 1.01188 0.92287 0.98909 1.23041 0.96582 0.99557 0.99041 0.92095 0.91961 0.92185 0.91730 0.88578 0.76447 0.91296 0.91452 0.88306 0.90581 0.93653 0.92158 0.95882 0.92020 0.92542 0.91430 0.89747 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.19 37.16 0.34 -0.37 16 2 C -0.13 -0.90 3.72 -88.60 -0.33 -1.23 16 3 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.38 7.18 38.22 0.27 0.65 16 5 O -0.35 -4.26 10.74 -54.80 -0.59 -4.85 16 6 C 0.06 0.62 3.84 -27.31 -0.10 0.52 16 7 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 8 C 0.51 6.88 6.94 -10.99 -0.08 6.80 16 9 O -0.52 -9.53 16.53 -14.01 -0.23 -9.76 16 10 N -0.72 -8.64 5.53 -61.47 -0.34 -8.98 16 11 C 0.16 2.23 5.66 -5.19 -0.03 2.20 16 12 C -0.15 -2.40 5.22 -100.99 -0.53 -2.93 16 13 C -0.13 -2.17 9.46 -35.97 -0.34 -2.51 16 14 C 0.16 3.29 4.69 -5.29 -0.02 3.27 16 15 N -0.60 -13.95 2.70 -173.91 -0.47 -14.42 16 16 C -0.37 -10.04 9.72 -15.05 -0.15 -10.18 16 17 H 0.06 1.86 8.06 -52.49 -0.42 1.44 16 18 C 0.01 0.19 4.77 -17.43 -0.08 0.10 16 19 N -0.89 -26.81 13.70 55.49 0.76 -26.05 16 20 Si 1.02 24.46 27.45 -169.99 -4.67 19.79 16 21 H -0.30 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.27 -5.93 4.81 56.52 0.27 -5.66 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.14 2.72 6.58 -3.53 -0.02 2.70 16 25 C -0.09 -1.52 5.95 -28.18 -0.17 -1.69 16 26 C -0.14 -1.10 6.20 -25.20 -0.16 -1.25 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.27 8.10 -51.93 -0.42 -0.16 16 30 H 0.06 0.40 8.05 -51.93 -0.42 -0.02 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 3.92 8.46 -40.82 -0.35 3.58 16 33 H 0.07 1.03 8.11 -51.92 -0.42 0.61 16 34 H 0.07 0.99 7.78 -51.93 -0.40 0.59 16 35 H 0.10 1.48 7.73 -52.49 -0.41 1.07 16 36 H 0.08 1.74 6.84 -51.93 -0.36 1.38 16 37 H 0.05 0.94 6.04 -51.93 -0.31 0.63 16 38 H 0.27 8.04 8.73 -40.82 -0.36 7.68 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.08 0.70 7.69 -51.93 -0.40 0.30 16 44 H 0.09 0.49 7.83 -51.93 -0.41 0.09 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -33.36 351.34 -9.03 -42.39 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.39 Total: 0.51 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.39 Total: -3.92 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.05 Total: -49.45 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.82 Total: -14.61 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.67 Total: 19.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.36 -9.03 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000972079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.057 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds